These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 950 fasta sequence [AGCAGAATTCCCGAGGTTTAGCTTGTTGCAAGCTTACTCANTTCGAACGGTAAAANAGCATTGTGTGAACTGCAAGAATAGTTTAAACAATTTCGTCCATCATGAAAGACTACGTAGGATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAAATTCCCGCATAGTTAATGGATTAAATGCCGTAACACACGTACAACGCGTATGTGCTGTATCTGAACTCTGCCAACTCTGGGGTATCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATGTGCTGACCGCGGCACAAAAAACATTGCCGGGCTCTCGTTCGCGNTGGGAAGTTTGGACCTAGGGAGCCACCCCGGTGTTCATGGGCCAGCTAAACAATAATTTCAAATCTTCTTAGCCAGTGCCGTCGACACAATTCCTAAGGCTTTCCAACTTACTGGGCACAAAATCGGGGGCTTAAACGGATCATTTGGGGATTCCATATGTGGCGTGCCCTCAAAAGCAAATAGATCCCTTTTNACCGGGACACTTGACTTAAGTCCCGGCAGTTCCCACGACTTGAGCCATTACACACGGTGGTGAGCCCGCCACATACCTTGNNACCGGTAACCNCGGAAAACCAACTTTGGAACNGTGTAAAAGNGGGCCATTTTGAAATNCCNGGCATATGGNGCACATTACCCAGGGAACTATTACANCAACCTTCCGNACGCAATANGACCAAACGGGNCCCAACANAGAATATCACCGGCACCTNTNCCCCGCNNANATNTACTNATGCCATTNTNACAAAGAGGGCTTNTGGGGCGTTAATCAAAGAAGAGAAAAGTCGAAGACCCAACGGAAGTNATCCACACGACATATGTACANGCGTNANGGATTATTTAAGTAATCCACACACATCCCANCGCATGTGTGCCGTAAGTTCAAA] [+] EMBL AL696477 [AGCAGAATTCCCGAGGTTTAGCTTGTTGCAAGCTTACTCANTTCGAACGGTAAAANAGCATTGTGTGAACTGCAAGAATAGTTTAAACAATTTCGTCCATCATGAAAGACTACGTAGGATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAAATTCCCGCATAGTTAATGGATTAAATGCCGTAACACACGTACAACGCGTATGTGCTGTATCTGAACTCTGCCAACTCTGGGGTATCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATGTGCTGACCGCGGCACAAAAAACATTGCCGGGCTCTCGTTCGCGNTGGGAAGTTTGGACCTAGGGAGCCACCCCGGTGTTCATGGGCCAGCTAAACAATAATTTCAAATCTTCTTAGCCAGTGCCGTCGACACAATTCCTAAGGCTTTCCAACTTACTGGGCACAAAATCGGGGGCTTAAACGGATCATTTGGGGATTCCATATGTGGCGTGCCCTCAAAAGCAAATAGATCCCTTTTNACCGGGACACTTGACTTAAGTCCCGGCAGTTCCCACGACTTGAGCCATTACACACGGTGGTGAGCCCGCCACATACCTTGNNACCGGTAACCNCGGAAAACCAACTTTGGAACNGTGTAAAAGNGGGCCATTTTGAAATNCCNGGCATATGGNGCACATTACCCAGGGAACTATTACANCAACCTTCCGNACGCAATANGACCAAACGGGNCCCAACANAGAATATCACCGGCACCTNTNCCCCGCNNANATNTACTNATGCCATTNTNACAAAGAGGGCTTNTGGGGCGTTAATCAAAGAAGAGAAAAGTCGAAGACCCAACGGAAGTNATCCACACGACATATGTACANGCGTNANGGATTATTTAAGTAATCCACACACATCCCANCGCATGTGTGCCGTAAGTTCAAA] consensusID : consensus_2197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [GCAGAATCGCCCCGAGGGGAGCTGGTTGCAAGCTTACTCAGTTCGAACGGTAAAACAGCATTGTGTGAACTGCAAGAATAGTTTAAACAAATTTCGTCCATCATGAAAGACTACGTAGATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAAATTCCCGCATAGTTAATGGATTAAATGCCGCTAACACACCGTACAACGCGTATGTGCTGTATCTGAACTCTGCCAACTCTGGCTTCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATGTGCTGACCGCGGCACAAAACATTGCGGGCTTCGTTCGGTGGGAAGTTGGACTAGGAGCACCGTGTTTGGGCAGCTAAATATTCAAATCTCTAGCCAGGCCGTCGCACATCCTATTTCAATATGGCAAATCGGGCTAACGATATTGGATT] [+] EMBL AL932428 [GCAGAATCGCCCCGAGGGGAGCTGGTTGCAAGCTTACTCAGTTCGAACGGTAAAACAGCATTGTGTGAACTGCAAGAATAGTTTAAACAAATTTCGTCCATCATGAAAGACTACGTAGATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCGAAATTCCCGCATAGTTAATGGATTAAATGCCGCTAACACACCGTACAACGCGTATGTGCTGTATCTGAACTCTGCCAACTCTGGCTTCTTCGGTGGAGGATCGCTGATCTCTGATCGTCATGTGCTGACCGCGGCACAAAACATTGCGGGCTTCGTTCGGTGGGAAGTTGGACTAGGAGCACCGTGTTTGGGCAGCTAAATATTCAAATCTCTAGCCAGGCCGTCGCACATCCTATTTCAATATGGCAAATCGGGCTAACGATATTGGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2197#0 AGCAGAATT-CCCGAGGTTTAGCTTGTTGCAAGCTTACTCANTTCGAACGGTAAAANAGC 59 consensus_2197#1 -GCAGAATCGCCCCGAGGGGAGCTGGTTGCAAGCTTACTCAGTTCGAACGGTAAAACAGC 59 ******* *** * **** **************** ************** *** consensus_2197#0 ATTGTGTGAACTGCAAGAATAGTTTAAACAA-TTTCGTCCATCATGAAAGACTACGTAGG 118 consensus_2197#1 ATTGTGTGAACTGCAAGAATAGTTTAAACAAATTTCGTCCATCATGAAAGACTACGTAG- 118 ******************************* *************************** consensus_2197#0 ATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCG 178 consensus_2197#1 ATTATTGCTCATTGCAATTACACTGTGCTGCGTGTCGGCCGGAGAAATTTCCTTGGATCG 178 ************************************************************ consensus_2197#0 AAATTCCCGCATAGTTAATGGATTAAATGCCG-TAACACAC-GTACAACGCGTATGTGCT 236 consensus_2197#1 AAATTCCCGCATAGTTAATGGATTAAATGCCGCTAACACACCGTACAACGCGTATGTGCT 238 ******************************** ******** ****************** consensus_2197#0 GTATCTGAACTCTGCCAACTCTGGGGTATCTTCGGTGGAGGATCGCTGATCTCTGATCGT 296 consensus_2197#1 GTATCTGAACTCTGCCAACTCTGG--CTTCTTCGGTGGAGGATCGCTGATCTCTGATCGT 296 ************************ ******************************** consensus_2197#0 CATGTGCTGACCGCGGCACAAAAAACATTGCCGGGCTCTCGTTCGCGNTGGGAAGTTTGG 356 consensus_2197#1 CATGTGCTGACCGCGGCACAAA--ACATTGC-GGGCT-TCGTTCG--GTGGGAAGTT-GG 349 ********************** ******* ***** ******* ********* ** consensus_2197#0 ACCTAGGGAGCCACCCCGGTGTTCATGGGCCAGCTAAACAATAATTTCAAATCTTCTTAG 416 consensus_2197#1 ACTAGGAGCACC------GTGTTT---GGGCAGCTAAATA-----TTCAAATCTC--TAG 393 ** * * ** ***** ** ******** * ********* *** consensus_2197#0 CCAGTGCCGTCGACACAATTCCTAAGGCTTTCCAACTTACTGGGCACAAAATCGGGGGCT 476 consensus_2197#1 CCAG-GCCGTCG-CACA--TCCTATTTCAATATGGCAAATCGGGCTAACGATATTGGATT 449 **** ******* **** ***** * * * * **** * ** ** * consensus_2197#0 TAAACGGATCATTTGGGGATTCCATATGTGGCGTGCCCTCAAAAGCAAATAGATCCCTTT 536 consensus_2197#1 ------------------------------------------------------------ consensus_2197#0 TNACCGGGACACTTGACTTAAGTCCCGGCAGTTCCCACGACTTGAGCCATTACACACGGT 596 consensus_2197#1 ------------------------------------------------------------ consensus_2197#0 GGTGAGCCCGCCACATACCTTGNNACCGGTAACCNCGGAAAACCAACTTTGGAACNGTGT 656 consensus_2197#1 ------------------------------------------------------------ consensus_2197#0 AAAAGNGGGCCATTTTGAAATNCCNGGCATATGGNGCACATTACCCAGGGAACTATTACA 716 consensus_2197#1 ------------------------------------------------------------ consensus_2197#0 NCAACCTTCCGNACGCAATANGACCAAACGGGNCCCAACANAGAATATCACCGGCACCTN 776 consensus_2197#1 ------------------------------------------------------------ consensus_2197#0 TNCCCCGCNNANATNTACTNATGCCATTNTNACAAAGAGGGCTTNTGGGGCGTTAATCAA 836 consensus_2197#1 ------------------------------------------------------------ consensus_2197#0 AGAAGAGAAAAGTCGAAGACCCAACGGAAGTNATCCACACGACATATGTACANGCGTNAN 896 consensus_2197#1 ------------------------------------------------------------ consensus_2197#0 GGATTATTTAAGTAATCCACACACATCCCANCGCATGTGTGCCGTAAGTTCAAA 950 consensus_2197#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||