cluster # 2198

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Anopheles gambiae
cluster # 2198 cluster # 2198 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2198#0 length = 690 sequences # 1

consensus_2198#1 length = 568 sequences # 1

consensusID : consensus_2198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [CCGCGGACGCGTGGGCTGGGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTTACCATTTTAATTGACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAGACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCTCAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACGCGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTCCTGCATCGCCGGGCTGTTCGTGTGCCGCT]

[+] EMBL BM599563             [CCGCGGACGCGTGGGCTGGGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTTACCATTTTAATTGACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAGACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCTCAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACGCGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTCCTGCATCGCCGGGCTGTTCGTGTGCCGCT]




>consensus_2198#0
CCGCGGACGCGTGGGCTGGGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTT
ATTTACCATTTTAATTGACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTC
TAGACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTA
GCGCCCCAGGTGTGAAAACAACAGCGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTG
TCTGTGTGTGTTTGTGCGCTACCCTTGCGGGGAAAGAACATTGCCAGCCCCCCTCCCCTT
CCCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGA
TGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCT
CGTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCC
AGAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTC
TCAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTAC
GCGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTT
CCTGCATCGCCGGGCTGTTCGTGTGCCGCT

consensusID : consensus_2198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTTTACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAGTGGCGGCCACGGAGGAAACAACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAGACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGT]

[+] EMBL CNS09BNA             [CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTTTACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAGTGGCGGCCACGGAGGAAACAACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAGACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGCCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCTGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCCCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATGGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCGTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCAGAAAGGTGCGCTGCTTATCAGCTTAGGGT]




>consensus_2198#1
CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTT
TACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAGTGGCGGCCACGGAGGAAACA
ACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAGA
CAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCGC
CCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTCT
GTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTCC
CGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGATG
GTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTCG
TTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCAG
AAAGGTGCGCTGCTTATCAGCTTAGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2198#0      -------------------------------------------------------CCGCG 5
consensus_2198#1      CAGCGCGTCCCTTTTCGGGAGAGAGGGAGAGAGAAGGCAGGGCAGGACAGGGCGACGGTT 60
                                                                             * *  

consensus_2198#0      GACGCGTGGGCTG-GGCTGGCTGGCGGAGGCCGCGCACAGATCGCGTGCGTGATTTATTT 64
consensus_2198#1      TACGACACACCTGTGGACGGGAAGAAAAGGCAGCGAGCAG-TGGCGGCCACGGAGGAAAC 119
                       ***      *** **  **   *   **** ***  *** * ***  *  *    *   

consensus_2198#0      ACCATTTTAATT-GACTCCTGTTGACCTTTTTTCTCCGTTTTCGCTTTCTCGCGTTCTAG 123
consensus_2198#1      AACAGCACGGTCAGACAACACATACGCCTCAAATTTCGCGTCGTCATTTCTGTCCGGCAG 179
                      * **      *  ***  *   *   * *     * **  *   * **   *      **

consensus_2198#0      ACAAGCGTGTGTACGCGTTTGGTGTTCCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCG 183
consensus_2198#1      ACAAGTGTGTGTACGCGTTTGGTGTTGCTCCAGCAGTGTGAAAATGAACCAGCAGTAGCG 239
                      ***** ******************** *********************************

consensus_2198#0      CCCCAGGTGTGAAAACAACAGCGG-TACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTC 242
consensus_2198#1      CCCCAGGTGTGAAAACAACAGCGGGTACAGCGGGTTGAAGCTTCCAACAAAACGTGTGTC 299
                      ************************ ***********************************

consensus_2198#0      TGTGTGTGTTTGTGCGCTACCCTTGCG-GGGAAAGAACATTGCCAGCCCCCCTCCCCTTC 301
consensus_2198#1      TGTGTGTGTTTGTGCGCTACCCTTGCGCGGGAAAGAACATTGCCAGCCCCCCTCCCCTTC 359
                      *************************** ********************************

consensus_2198#0      CCGGTCAAAGGATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGAT 361
consensus_2198#1      CCGGTCAAAGAATTCCGGTACAAGAAGCAAACGGAAAACGACCGAACGCCGCCAGAGGAT 419
                      ********** *************************************************

consensus_2198#0      GGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTC 421
consensus_2198#1      GGTGGAGGAAAAGCTAAACACGCGCGGCTGCGTCTTCTCGCTGCTCTACTCGGTCGGCTC 479
                      ************************************************************

consensus_2198#0      GTTCGCGCTGGCTTGCGCAAGCCTGTCCACGCTCGACCCGAGTGATCGCATTACGGTCCA 481
consensus_2198#1      GTTCGCGCTGGCTTGCGCAACCTGATCCACGCTCGACCCGAGTGATCGCATTACGGTCCA 539
                      ******************** *   ***********************************

consensus_2198#0      GAAAGGTGCGCTGCTTATCAGCTTAGGGTTCGTGTACTTTGTCGCCCTTACCGAGTTTCT 541
consensus_2198#1      GAAAGGTGCGCTGCTTATCAGCTTAGGGT------------------------------- 568
                      *****************************                               

consensus_2198#0      CAACCAGCTGCTGCTGCGGACGACCATCGGGCACAGCTTCGTCAAGCGGTACCGGTTACG 601
consensus_2198#1      ------------------------------------------------------------
                                                                                  

consensus_2198#0      CGTATCGGACGTGCTGGACATCACGAACAAGCTCGTGTCCGCCGTGCAGGCCGCCTTTTC 661
consensus_2198#1      ------------------------------------------------------------
                                                                                  

consensus_2198#0      CTGCATCGCCGGGCTGTTCGTGTGCCGCT 690
consensus_2198#1      -----------------------------