These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CCGGTGCATCAACCATTGTGCAAATGTGTATGCAAAAGTGCATAGTGGACGAGCACGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGCAAATCAACAAATAGTAAAAATACCGATATAGGAAATATGCAAATGGTAAGCAATGTTTTTTCAACGATGAATTTAAACAAACCACAAATACTCCGACGATTATATTAGTATGCGCAGTTGAGAGCAACACCGGAGCGTTAGTTGAGAAATAATAGCACAAAAGCAACAATAAGTTAAAATGTTTGAGCTAGCAAAAAGCAAAAAAAAAGCAAAGCAAAAAGAAAGAGACTTTTATCTAACTGTTCAGTGAATTCAACTTTTCTCAAAACTGCTGCTGCTACGGTACTGCTACAACGCGCGCACATTCTTCCGAGCAGAATCAAGATTTTTCAAACTGACATTTTCATCTCCAACTTTCTCCTCTGTGTAGAGTTGAGTATCTTGTTTGAAATCCCGTAACCTACTTTGAACTACTGTTACATATGACGCATGTGTAGTACATTTATGTAGTAACGCGTCCACCGAACCAGATAGAAATTTTACAAAGAAACCTCCACTTCACAGAAAAGCGCGCAAACGCAAAGATCCCGTTAGTTGAATGAAAAAAAAAATCAACCACAACCT] [+] EMBL BM599546 [CCGGTGCATCAACCATTGTGCAAATGTGTATGCAAAAGTGCATAGTGGACGAGCACGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGCAAATCAACAAATAGTAAAAATACCGATATAGGAAATATGCAAATGGTAAGCAATGTTTTTTCAACGATGAATTTAAACAAACCACAAATACTCCGACGATTATATTAGTATGCGCAGTTGAGAGCAACACCGGAGCGTTAGTTGAGAAATAATAGCACAAAAGCAACAATAAGTTAAAATGTTTGAGCTAGCAAAAAGCAAAAAAAAAGCAAAGCAAAAAGAAAGAGACTTTTATCTAACTGTTCAGTGAATTCAACTTTTCTCAAAACTGCTGCTGCTACGGTACTGCTACAACGCGCGCACATTCTTCCGAGCAGAATCAAGATTTTTCAAACTGACATTTTCATCTCCAACTTTCTCCTCTGTGTAGAGTTGAGTATCTTGTTTGAAATCCCGTAACCTACTTTGAACTACTGTTACATATGACGCATGTGTAGTACATTTATGTAGTAACGCGTCCACCGAACCAGATAGAAATTTTACAAAGAAACCTCCACTTCACAGAAAAGCGCGCAAACGCAAAGATCCCGTTAGTTGAATGAAAAAAAAAATCAACCACAACCT] consensusID : consensus_2201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [AAAAAATTGCGTTCTGCAAATTCATCACGCCTCTGTGTTAGGATCCCCATTTCATTGAATTCTAACGCAACAACGACAATTATCCAATAATGTGTATGATCATCACATTGCTTCGGGCATTTATACCAATGGCCAAGCTGTAGTATCCCCTAATAATGGCAACAACATTGGTTCGCCTGCGGCACCATGTCGCCAACACTTGAAAAAGAGTCCGTTATAGATAGCAGAGATATTTAGCGTCTACGTAGGAGTGTTCCCCCTAATGTAAACAAAATCATACGTCAGTATTTTACTGCATTTAACTATCTTAACGTGACATACACAAACCAAGCCTAAGTGCATCAACCATTGTGCAAATGTATATGCAAAAGTGCATAGGGGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGC] [+] EMBL BX614509 [AAAAAATTGCGTTCTGCAAATTCATCACGCCTCTGTGTTAGGATCCCCATTTCATTGAATTCTAACGCAACAACGACAATTATCCAATAATGTGTATGATCATCACATTGCTTCGGGCATTTATACCAATGGCCAAGCTGTAGTATCCCCTAATAATGGCAACAACATTGGTTCGCCTGCGGCACCATGTCGCCAACACTTGAAAAAGAGTCCGTTATAGATAGCAGAGATATTTAGCGTCTACGTAGGAGTGTTCCCCCTAATGTAAACAAAATCATACGTCAGTATTTTACTGCATTTAACTATCTTAACGTGACATACACAAACCAAGCCTAAGTGCATCAACCATTGTGCAAATGTATATGCAAAAGTGCATAGGGGGAACAGTTTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGCATACAAATCTTGTTGCAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2201#0 CCGGTGCATCAACCATTGTGCAAATGTGTA-TGCAAAAGTGCATAGTGGACGAGCACGGA 59 consensus_2201#1 -----------------AAAAAATTGCGTTCTGCAAATTCATCACGCCTCTGTGTTAGGA 43 ** ** ** ****** * * * *** consensus_2201#0 ACAGTTTTTCGGT-AGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACACACATGGC 118 consensus_2201#1 TCCCCATTTCATTGAATTCTAACGCAA---CAACGACAATTATCCAATAATGTGTATGAT 100 * **** * * ** * **** * * * ** ** ** *** consensus_2201#0 ATACAAATCTTGTTGCAAGCAAATCAACAAATAGTAAAAATACCG-ATATAGGAAATATG 177 consensus_2201#1 CATCACAT--TGCTTCGGGCATTTATACCAATGGCCAAGCTGTAGTATCCCCTAATAATG 158 ** ** ** * * *** * ** *** * ** * * ** ** *** consensus_2201#0 CAAATGGTAAGCAATGTTTTTTCAACGATGAATTTAAACAAACCACAAATACTCCGACGA 237 consensus_2201#1 GCAAC----AACATTGGTTCGCCTGCGGCACCATGTCGCCAACACTTGAAAAAGAGTCCG 214 ** * ** ** ** * ** * * *** * * * * consensus_2201#0 TTATAT-TAGTATGCGCAGTTGAGAGCAACACCGGAGCGTTAGTTGAGAAATAATAGCAC 296 consensus_2201#1 TTATAGATAGCAGAGATATTTAGCGTCTACGTAGGAGTGTTCCCCCTAATGTAAACAAAA 274 ***** *** * * ** * ** **** *** * *** * consensus_2201#0 AAAAGCAACAATAAGTTAAAATGTTTGAGCTAGCAAAAAGCAAAAAAAA--AGCAAAGCA 354 consensus_2201#1 TCATACGTCAGTATTTTACTGCATTT-AACTATCTTAACGTGACATACACAAACCAAGCC 333 * * ** ** *** *** * *** * ** * * * * * * * **** consensus_2201#0 AAAAGAAAGAGACTTTTATCTAACTGTTCAGTGAATTCAACTTTTCTCAAAACTGCTGCT 414 consensus_2201#1 TAAGTGCATCAACCATTGTGCAAATGTAT-----ATGCAAAAGTGCATAGGGGGAACAGT 388 ** * ** ** * ** *** ** *** * * * * consensus_2201#0 GCTACGGTACTGCTACAACGCGCGCACATTCTTCCGAGCAGAATCAAGATTTTTCAAACT 474 consensus_2201#1 TTTTCGGTAGTTTTGGGGCAAGTCCTCTATCCTTCATACACAAACAC-ACATGGCATACA 447 * ***** * * * * * * ** * * ** ** ** * * ** ** consensus_2201#0 GACATTTTCATCTCCAACTTTCTCCTCTGTGTAGAGTTGAGTATCTTGTTTGAAATCCCG 534 consensus_2201#1 AATCTTGTTGCAAGC--------------------------------------------- 462 * ** * * consensus_2201#0 TAACCTACTTTGAACTACTGTTACATATGACGCATGTGTAGTACATTTATGTAGTAACGC 594 consensus_2201#1 ------------------------------------------------------------ consensus_2201#0 GTCCACCGAACCAGATAGAAATTTTACAAAGAAACCTCCACTTCACAGAAAAGCGCGCAA 654 consensus_2201#1 ------------------------------------------------------------ consensus_2201#0 ACGCAAAGATCCCGTTAGTTGAATGAAAAAAAAAATCAACCACAACCT 702 consensus_2201#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||