These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1133 fasta sequence [TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAACAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGGTCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGGCTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAATCTAACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAACGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATNGTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCNTNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCCCCTATTGGAANATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGAGTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGTGTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTCNTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACACAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACAAAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAANACTCAAAAAAAAACAANACATTATACCAANAAACNGGTCAAAAAAAAACACTGTAACCANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATCTACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA] [+] EMBL AL696496 [TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAACAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGGTCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGGCTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAATCTAACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAACGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATNGTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCNTNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCCCCTATTGGAANATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGAGTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGTGTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTCNTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACACAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACAAAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAANACTCAAAAAAAAACAANACATTATACCAANAAACNGGTCAAAAAAAAACACTGTAACCANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATCTACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA] consensusID : consensus_2203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CAGAATCGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACGTTGTAGTGCCTCAAGCAGCTTGTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGAGATGCACTTCTCTCTGCCTTGAACACAATTGTGCCACCGCGAATGCGAAAAGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACGACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAATGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAACAGCCTTTTCAAAGACAGGATTCATGCAGGATGGAGATACTTTGACGCGTAAAGGTGGTCCGTGCATTGCTGTGGATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGATGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAAGGCCATATTACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATGGTATTTCNAGCTAATTGATTCTCCTCATCCGNGTGCCTGTGTGTGTGTGTGCGTGTATGTGTG] [+] EMBL BX468454 [CAGAATCGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACGTTGTAGTGCCTCAAGCAGCTTGTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGAGATGCACTTCTCTCTGCCTTGAACACAATTGTGCCACCGCGAATGCGAAAAGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACGACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAATGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAACAGCCTTTTCAAAGACAGGATTCATGCAGGATGGAGATACTTTGACGCGTAAAGGTGGTCCGTGCATTGCTGTGGATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGATGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAAGGCCATATTACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATGGTATTTCNAGCTAATTGATTCTCCTCATCCGNGTGCCTGTGTGTGTGTGTGCGTGTATGTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2203#0 TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTT 60 consensus_2203#1 ------------------------------------------------------------ consensus_2203#0 TGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGC 120 consensus_2203#1 ------------------------------------------------------------ consensus_2203#0 AAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAA 180 consensus_2203#1 ------------------------------------------------------------ consensus_2203#0 CAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGG 240 consensus_2203#1 ------------------------------------------------------------ consensus_2203#0 TCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGG 300 consensus_2203#1 ------------------------------------------------------------ consensus_2203#0 CTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAAT 360 consensus_2203#1 ------------------------------------------------------CAGAAT 6 ** *** consensus_2203#0 CTA-ACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAA 419 consensus_2203#1 CGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACG-TTGTAGTGCCTCAAG 65 * ** * ** * *** * * **** ** ** *** * ** consensus_2203#0 CGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATN 479 consensus_2203#1 CAGCTT---GTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGA 122 * ** * * * * * * *** * *** ** * * * * consensus_2203#0 GTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCN 539 consensus_2203#1 GATGCACTTCTCTCTGCCTTGAACAC----AATTGTGCC------ACCGCGAATGCGAAA 172 * * * * * ** ** **** * * * ** ** ** * * consensus_2203#0 TNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCC 599 consensus_2203#1 -AGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACG 231 * * ** * * * *** * ***** * * * * * * consensus_2203#0 CCTATTGGAAN-ATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGA 658 consensus_2203#1 ACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATA-AATGCCTTTGT 290 * * * * *** * ** ** * *** * * * consensus_2203#0 GTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGT 718 consensus_2203#1 TTTTGTTTTTAACT---AGACGTTTAAGTGAATGTGCAAGCCGA--TAAAGCATGCAA-- 343 * *** **** * ** *** * ** *** ** * * ** consensus_2203#0 GTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTC 778 consensus_2203#1 -TACAGAAATGCGCCTTATTTTT------CACGATACACAATAACAACAGCC------TT 390 * ** ** **** *** ** * **** **** * consensus_2203#0 NTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACA 838 consensus_2203#1 TTCAAAGACAGGATTCATG------CAGGATGGAGATACTTTGACGCGTAAAGGTG---- 440 * *** * * ** * * * * ** ** consensus_2203#0 CAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACA 898 consensus_2203#1 -GTCCGTGCATTGCTGTGG-ATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGA 498 ** * *** * * * * ** * ** * ***** * **** * consensus_2203#0 AAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAA 958 consensus_2203#1 TGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAA--GGCCATAT 556 * * ** * * ** * ****** * * *** * ** ** * * * consensus_2203#0 NACTCAAAAAAAAACAANACATT-ATACCAANAAACNGGTCAAAAAAAAACACTGTAACC 1017 consensus_2203#1 TACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATG 616 ** ** ** ** * ** * ** * * * * * consensus_2203#0 ANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATC 1077 consensus_2203#1 GTATTTCNAGCTAATTGATTCTC--CTCATCCGNGTGCC-TGTGTGTGTGTGTGCGTGTA 673 *** * * * * * **** * * * ** * consensus_2203#0 TACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA 1133 consensus_2203#1 TGTGTG-------------------------------------------------- 679 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||