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Anopheles gambiae
cluster # 2203 cluster # 2203       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2203#0 length = 1133 sequences # 1  
consensus_2203#1 length = 679 sequences # 1  

consensusID : consensus_2203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1133
fasta sequence
                              [TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAACAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGGTCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGGCTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAATCTAACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAACGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATNGTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCNTNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCCCCTATTGGAANATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGAGTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGTGTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTCNTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACACAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACAAAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAANACTCAAAAAAAAACAANACATTATACCAANAAACNGGTCAAAAAAAAACACTGTAACCANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATCTACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA]

[+] EMBL AL696496             [TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAACAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGGTCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGGCTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAATCTAACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAACGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATNGTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCNTNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCCCCTATTGGAANATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGAGTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGTGTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTCNTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACACAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACAAAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAANACTCAAAAAAAAACAANACATTATACCAANAAACNGGTCAAAAAAAAACACTGTAACCANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATCTACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA]


>consensus_2203#0 TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTT TGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGC AAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAA CAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGG TCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGG CTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAAT CTAACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAAC GTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATNG TTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCNT NGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCCC CTATTGGAANATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGAGT ATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGTGT GNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTCNT GAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACACA ACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACAAA ATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAANA CTCAAAAAAAAACAANACATTATACCAANAAACNGGTCAAAAAAAAACACTGTAACCANA TTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATCTAC ACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA



consensusID : consensus_2203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence
                              [CAGAATCGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACGTTGTAGTGCCTCAAGCAGCTTGTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGAGATGCACTTCTCTCTGCCTTGAACACAATTGTGCCACCGCGAATGCGAAAAGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACGACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAATGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAACAGCCTTTTCAAAGACAGGATTCATGCAGGATGGAGATACTTTGACGCGTAAAGGTGGTCCGTGCATTGCTGTGGATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGATGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAAGGCCATATTACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATGGTATTTCNAGCTAATTGATTCTCCTCATCCGNGTGCCTGTGTGTGTGTGTGCGTGTATGTGTG]

[+] EMBL BX468454             [CAGAATCGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACGTTGTAGTGCCTCAAGCAGCTTGTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGAGATGCACTTCTCTCTGCCTTGAACACAATTGTGCCACCGCGAATGCGAAAAGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACGACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAATGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAACAGCCTTTTCAAAGACAGGATTCATGCAGGATGGAGATACTTTGACGCGTAAAGGTGGTCCGTGCATTGCTGTGGATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGATGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAAGGCCATATTACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATGGTATTTCNAGCTAATTGATTCTCCTCATCCGNGTGCCTGTGTGTGTGTGTGCGTGTATGTGTG]


>consensus_2203#1 CAGAATCGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACGTTGTAGTGCC TCAAGCAGCTTGTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAG GAGATGCACTTCTCTCTGCCTTGAACACAATTGTGCCACCGCGAATGCGAAAAGAAAACG GAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACGACAAACGCT TTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTT AACTAGACGTTTAAGTGAATGTGCAAGCCGATAAAGCATGCAATACAGAAATGCGCCTTA TTTTTCACGATACACAATAACAACAGCCTTTTCAAAGACAGGATTCATGCAGGATGGAGA TACTTTGACGCGTAAAGGTGGTCCGTGCATTGCTGTGGATGAATTTATTTTTTCATAAGC TCCAAAATGCTTAACAGATGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAG TTCACCAAGGCCATATTACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGT GTCGTGTTCGATTATGGTATTTCNAGCTAATTGATTCTCCTCATCCGNGTGCCTGTGTGT GTGTGTGCGTGTATGTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2203#0      TCAGCAGAATCCCGCGGTTAAAGGACGACAACGCTTTTAGACAGTGGACAGGAACGTGTT 60
consensus_2203#1      ------------------------------------------------------------
                                                                                  

consensus_2203#0      TGGCCTTTTGCATAAATGCCTTTGTTTTTGTTTTTAACTAGACGTTTAAGTGAAGTGTGC 120
consensus_2203#1      ------------------------------------------------------------
                                                                                  

consensus_2203#0      AAGCCGATAAAGCATGCAATACAGAAATGCGCCTTATTTTTCACGATACACAATAACAAA 180
consensus_2203#1      ------------------------------------------------------------
                                                                                  

consensus_2203#0      CAGCTTTTCCAAGACAGGATTCACTGCGGATGGAGATACTTTGAACGCGTAAAGGGTTGG 240
consensus_2203#1      ------------------------------------------------------------
                                                                                  

consensus_2203#0      TCCCGTGCACATTTGCTNGTGGATTGAANTTTAGTATTTTTCATANAGCTCCCCACATGG 300
consensus_2203#1      ------------------------------------------------------------
                                                                                  

consensus_2203#0      CTTTAACACGATGNANTGACCGACGACGATTTATCGCCNACAACAAAAAACAACCACAAT 360
consensus_2203#1      ------------------------------------------------------CAGAAT 6
                                                                            ** ***

consensus_2203#0      CTA-ACAAAGTTCAACCCAAAGGGCACTATTAACACGGTGCACACTTGNGGCAAAATAAA 419
consensus_2203#1      CGGCACGNGGAGAAAACAAAAAAATAACAACAACAGTGTCGACG-TTGTAGTGCCTCAAG 65
                      *   **   *   ** * ***    *  *  ****  **  **  ***  *      ** 

consensus_2203#0      CGTCTCCGGGAACTAAGCCACNCACTAATTTAAAGGTGTCCNGNGTTACCGACCACAATN 479
consensus_2203#1      CAGCTT---GTAACAGACTAATAGATGTTTTGCAAATGTTACATTTTGACAAAGAAAGGA 122
                      *  **    * *  *  * *     *  ***  *  ***      **  * *  * *   

consensus_2203#0      GTTACTNATTCTNCAGCATTCAACATTAGGGANTNTTCCCTTCCANCCCCGTGTTNGCCN 539
consensus_2203#1      GATGCACTTCTCTCTGCCTTGAACAC----AATTGTGCC------ACCGCGAATGCGAAA 172
                      * * *   *    * ** ** ****      * * * **       ** **  *  *   

consensus_2203#0      TNGGAGTCGTAGTAGTAGGTAGGCGGTCGTCATTAGTCGTNGGTAGGCCNTACCGTGGCC 599
consensus_2203#1      -AGAAAACGGAACGGAAACGGTTCGGCCTTCATTGGATGAAACGAAAAACGAAAAGGACG 231
                        * *  ** *   * *      *** * ***** *  *     *      *    * * 

consensus_2203#0      CCTATTGGAAN-ATACAACGTTTCAGAGCGGAACTCCTNGNTTGNTNGCGGCTCGGTCGA 658
consensus_2203#1      ACAAACGCTTTTAGACAGTGGACAGGAACGTGTTTGGCCTTTTGCATA-AATGCCTTTGT 290
                       * *  *     * ***  *     ** **    *      ***         *  * * 

consensus_2203#0      GTATGTAGTTAATTAATAGCCGTAGNAACCGGCGTANAAGGCGTACTNGGGATCACAGGT 718
consensus_2203#1      TTTTGTTTTTAACT---AGACGTTTAAGTGAATGTGCAAGCCGA--TAAAGCATGCAA-- 343
                       * ***  **** *   ** ***   *      **  *** **   *   *    **   

consensus_2203#0      GTGNGGAGATATCATTTATCNGCAAGACACACAGAACTCNTTAACGACAGGNAATTAGTC 778
consensus_2203#1      -TACAGAAATGCGCCTTATTTTT------CACGATACACAATAACAACAGCC------TT 390
                       *   ** **     ****          ***   ** *  **** ****        * 

consensus_2203#0      NTGAAANTCTAAACACACAAACATCNCGCACAACAACATCCCAACCTGTTGTAACTTACA 838
consensus_2203#1      TTCAAAGACAGGATTCATG------CAGGATGGAGATACTTTGACGCGTAAAGGTG---- 440
                       * ***  *   *  **          * *     * *     **  **           

consensus_2203#0      CAACCCTACATCCTTTTAACAACTAACTACTGCGTCTCACCAACCAAANCACNAAACACA 898
consensus_2203#1      -GTCCGTGCATTGCTGTGG-ATGAATTTATTTTTTCATAAGCTCCAAAATGCTTAACAGA 498
                         ** * ***   * *   *   *  ** *   **  *    *****   *  **** *

consensus_2203#0      AAATACAAATGACACAAATAATACCAAAACAAACTCAAAAATGATACNAAACAACAAAAA 958
consensus_2203#1      TGAGGACGACGAGATTAGCAAAAAAAAAACACAATTAAAGAGTTCACCAA--GGCCATAT 556
                        *     * ** *  *  ** *  ****** * * *** *    ** **    * * * 

consensus_2203#0      NACTCAAAAAAAAACAANACATT-ATACCAANAAACNGGTCAAAAAAAAACACTGTAACC 1017
consensus_2203#1      TACAGGCAACTGGGAAATACGTCCGGACTAGGCAAACTATTAGTGTCGTGTTCGATTATG 616
                       **    **      ** ** *    ** *   **    * *          *  * *  

consensus_2203#0      ANATTACTTATTNCNAAAANCCCAANCTATCCAAANAAAATAAATTCACANGATCGCATC 1077
consensus_2203#1      GTATTTCNAGCTAATTGATTCTC--CTCATCCGNGTGCC-TGTGTGTGTGTGTGCGTGTA 673
                        *** *    *     *  * *     ****        *   *      *  **  * 

consensus_2203#0      TACACAATAAAACTANANTCACCCCCCAACCTTATTACATTCAACAACACATCATA 1133
consensus_2203#1      TGTGTG-------------------------------------------------- 679
                      *                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)