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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2205 cluster # 2205       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2205#0 length = 416 sequences # 1  
consensus_2205#1 length = 406 sequences # 1  

consensusID : consensus_2205#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence
                              [CGACGATCAGCAGTACTTTCCGTGCGATGCCAAGGCGATCCAGTGGAACAGCTTCCTGGATCATCAGATCAAGGGACTGCGGCAGTACCTGATGCGCGATCCGTGGAGCACGTTGGAGAAATCGGTGCGCCGCCATCGGTTGCGAACGTTTGCGCACTGGTGTCTGCTGGCGGTGCTGTACGGTGGAATGCTGTACTTGGTGGTGAAGGTACTGCACGCGTACGGGTACATTGATTTTACGGGTTTGCATGAGAGCAACTTGGAGGAGTGTCTAGAAGCGGAAGCTATATGAAAAGGGGAAGACGAGGTGCAGGGTGTTTTTGCGTAGGATAGGAACTAGATGAAATGCGCTTTCCTAGAGAGCGTAGACCCCAGGTAAGGACATGGTGTTATTAGGTCTTCTAGCGACATTTTTT]

[+] EMBL BM599510             [CGACGATCAGCAGTACTTTCCGTGCGATGCCAAGGCGATCCAGTGGAACAGCTTCCTGGATCATCAGATCAAGGGACTGCGGCAGTACCTGATGCGCGATCCGTGGAGCACGTTGGAGAAATCGGTGCGCCGCCATCGGTTGCGAACGTTTGCGCACTGGTGTCTGCTGGCGGTGCTGTACGGTGGAATGCTGTACTTGGTGGTGAAGGTACTGCACGCGTACGGGTACATTGATTTTACGGGTTTGCATGAGAGCAACTTGGAGGAGTGTCTAGAAGCGGAAGCTATATGAAAAGGGGAAGACGAGGTGCAGGGTGTTTTTGCGTAGGATAGGAACTAGATGAAATGCGCTTTCCTAGAGAGCGTAGACCCCAGGTAAGGACATGGTGTTATTAGGTCTTCTAGCGACATTTTTT]


>consensus_2205#0 CGACGATCAGCAGTACTTTCCGTGCGATGCCAAGGCGATCCAGTGGAACAGCTTCCTGGA TCATCAGATCAAGGGACTGCGGCAGTACCTGATGCGCGATCCGTGGAGCACGTTGGAGAA ATCGGTGCGCCGCCATCGGTTGCGAACGTTTGCGCACTGGTGTCTGCTGGCGGTGCTGTA CGGTGGAATGCTGTACTTGGTGGTGAAGGTACTGCACGCGTACGGGTACATTGATTTTAC GGGTTTGCATGAGAGCAACTTGGAGGAGTGTCTAGAAGCGGAAGCTATATGAAAAGGGGA AGACGAGGTGCAGGGTGTTTTTGCGTAGGATAGGAACTAGATGAAATGCGCTTTCCTAGA GAGCGTAGACCCCAGGTAAGGACATGGTGTTATTAGGTCTTCTAGCGACATTTTTT



consensusID : consensus_2205#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence
                              [CGACGATCAGCAGTACTTCCCGTGCGATGCCAAGGCGATCCAGTGGAACAGCGTTCCTGGATCATCAGATCAAGGGACTGCGGCAGTACCTGATGCGCGATCCGTGGAGCACGTTGGAGAAATCGGTGCGCCGGCATCGGTTGCGAACGTTTGCGCACTGGTGTCTGCTGGGCGGTTGCTTGTACGGTGGGGATGCGTGTACTTGGTGGGTTGAAAGGTACTGCNACCGCCGTACGGGTACATCGATTTTACCGGGGACTTGCATTTGAAGAAGCCAACCTTTTGGACGGAAGGTTGGTCATAGCANGGCGGGAAANGCNTAATATTGAAAAAAGGGGGGAAAGAAGGAAAGTGTTGCCAGGGGTGGTACACAAGGAGTTAAGGNATAAGGGAAACTTAGATTTCA]

[+] EMBL BX468176             [CGACGATCAGCAGTACTTCCCGTGCGATGCCAAGGCGATCCAGTGGAACAGCGTTCCTGGATCATCAGATCAAGGGACTGCGGCAGTACCTGATGCGCGATCCGTGGAGCACGTTGGAGAAATCGGTGCGCCGGCATCGGTTGCGAACGTTTGCGCACTGGTGTCTGCTGGGCGGTTGCTTGTACGGTGGGGATGCGTGTACTTGGTGGGTTGAAAGGTACTGCNACCGCCGTACGGGTACATCGATTTTACCGGGGACTTGCATTTGAAGAAGCCAACCTTTTGGACGGAAGGTTGGTCATAGCANGGCGGGAAANGCNTAATATTGAAAAAAGGGGGGAAAGAAGGAAAGTGTTGCCAGGGGTGGTACACAAGGAGTTAAGGNATAAGGGAAACTTAGATTTCA]


>consensus_2205#1 CGACGATCAGCAGTACTTCCCGTGCGATGCCAAGGCGATCCAGTGGAACAGCGTTCCTGG ATCATCAGATCAAGGGACTGCGGCAGTACCTGATGCGCGATCCGTGGAGCACGTTGGAGA AATCGGTGCGCCGGCATCGGTTGCGAACGTTTGCGCACTGGTGTCTGCTGGGCGGTTGCT TGTACGGTGGGGATGCGTGTACTTGGTGGGTTGAAAGGTACTGCNACCGCCGTACGGGTA CATCGATTTTACCGGGGACTTGCATTTGAAGAAGCCAACCTTTTGGACGGAAGGTTGGTC ATAGCANGGCGGGAAANGCNTAATATTGAAAAAAGGGGGGAAAGAAGGAAAGTGTTGCCA GGGGTGGTACACAAGGAGTTAAGGNATAAGGGAAACTTAGATTTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2205#0      CGACGATCAGCAGTACTTTCCGTGCGATGCCAAGGCGATCCAGTGGAACAGC-TTCCTGG 59
consensus_2205#1      CGACGATCAGCAGTACTTCCCGTGCGATGCCAAGGCGATCCAGTGGAACAGCGTTCCTGG 60
                      ****************** ********************************* *******

consensus_2205#0      ATCATCAGATCAAGGGACTGCGGCAGTACCTGATGCGCGATCCGTGGAGCACGTTGGAGA 119
consensus_2205#1      ATCATCAGATCAAGGGACTGCGGCAGTACCTGATGCGCGATCCGTGGAGCACGTTGGAGA 120
                      ************************************************************

consensus_2205#0      AATCGGTGCGCCGCCATCGGTTGCGAACGTTTGCGCACTGGTGTCTGCTGG-CGGTG--C 176
consensus_2205#1      AATCGGTGCGCCGGCATCGGTTGCGAACGTTTGCGCACTGGTGTCTGCTGGGCGGTTGCT 180
                      ************* ************************************* ****    

consensus_2205#0      TGTACGGTGGA-ATGC-TGTACTTGGTGGT---GAAGGTACTGCA--CGC-GTACGGGTA 228
consensus_2205#1      TGTACGGTGGGGATGCGTGTACTTGGTGGGTTGAAAGGTACTGCNACCGCCGTACGGGTA 240
                      **********  **** ************     **********   *** *********

consensus_2205#0      CATTGATTTTAC---GGGTTTGCATGAGAGCAACTTGGAGGAGTGTCTAGAAGCGGAAGC 285
consensus_2205#1      CATCGATTTTACCGGGGACTTGCATTTGAAGAAGCC-----AACCTTTTGGA-CGGAAGG 294
                      *** ********   **  ******  **  **        *   * * * * ****** 

consensus_2205#0      TATATGAAAAGGGGAAGACGAGGTGCAGGGTGTTTTTGCGTAGGATAGGAACTAGATGAA 345
consensus_2205#1      T---TGGTCATAGCANGGCGGGAAANGCNTAATATTGAAAAAAGGGGGGAA--AGAAGGA 349
                      *   **   *  * * * ** *          * **     * *   ****  *** * *

consensus_2205#0      ATGCGCTTTCCTAGAGAGCGTAGACCCCAGGTAAGGACATGGTGTTA--TTAGGTCTTCT 403
consensus_2205#1      AAGTG--TTGCCAGGGGTGGTACACAAGGAGTTAAGGNATAAGGGAAACTTAGATTTCA- 406
                      * * *  ** * ** *   *** **     ** * *  **   *  *  **** * *   

consensus_2205#0      AGCGACATTTTTT 416
consensus_2205#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)