These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence [TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTACTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTTCTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAGTTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTAACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGGGGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACTGATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGAGCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATTGGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCACTAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTAGAGACCGGACAGGGAACCAATCAATCNCCCTCAAGNGCACAAAAAGGTTCACCACCGATGGAATACACACNTCACGTAAATACATGGCGCCNANG] [+] EMBL AL696516 [TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTACTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTTCTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAGTTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTAACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGGGGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACTGATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGAGCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATTGGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCACTAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTAGAGACCGGACAGGGAACCAATCAATCNCCCTCAAGNGCACAAAAAGGTTCACCACCGATGGAATACACACNTCACGTAAATACATGGCGCCNANG] consensusID : consensus_2207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CAGGACCGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGTTTTTGAGTGGCAAACTGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTAACGCGATCGGCACCGACGGATGAGCAGTGCAATGTGACGGGGCTGGCGATATGGGAGTTCCAGGGACTTTCGCTGGAGCTGGTGAAGGCCATGCCGGATAAGGATACCGATAGCTTGTTTGTAGATCCTTCCACCAGTGGACGGTTCTACGTCTTGGAGCGCACGACCGTGCTCGAGTATGATGTGACTGGTAAGGTGCAGGAAGAATGGGACCTGTCACGCATCTTTGAAGCAGCAAGCTTTGTACCGAGCTCACTTGGTGTTGGACTGGCTTTGGCCGATGGGAAACGAATTGCGGTTCTGTCTAGAGCCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTAAATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTCGTACTACCGCACGGATGA] [+] EMBL BX603437 [CAGGACCGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGTTTTTGAGTGGCAAACTGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTAACGCGATCGGCACCGACGGATGAGCAGTGCAATGTGACGGGGCTGGCGATATGGGAGTTCCAGGGACTTTCGCTGGAGCTGGTGAAGGCCATGCCGGATAAGGATACCGATAGCTTGTTTGTAGATCCTTCCACCAGTGGACGGTTCTACGTCTTGGAGCGCACGACCGTGCTCGAGTATGATGTGACTGGTAAGGTGCAGGAAGAATGGGACCTGTCACGCATCTTTGAAGCAGCAAGCTTTGTACCGAGCTCACTTGGTGTTGGACTGGCTTTGGCCGATGGGAAACGAATTGCGGTTCTGTCTAGAGCCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTAAATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTCGTACTACCGCACGGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2207#0 TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTA 60 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 CTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTT 120 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 CTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAG 180 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 TTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGG 240 consensus_2207#1 ------------------CAGGACC-GAGTGTTCGTGGGACTGTTCAAGGCGCACACGGG 41 ******* ********************************** consensus_2207#0 ATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTA 300 consensus_2207#1 ATACG--TTTTTGAGTGGCAAAC---TGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTA 96 ***** *** ************ **** **** ********************* consensus_2207#0 ACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGG 360 consensus_2207#1 ACGCGATCG-GC-ACCGA--CGGATGAGCAGTGCAATGTGACGGGGCTGG--CGATATGG 150 ********* ** ***** ******** ***************** * ******** consensus_2207#0 GGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACT 420 consensus_2207#1 G-AGTT-CCAGGGACT-TTCGCTGG-AGCTGGTGAAGGCCATG--CCGGATAAGGATACC 204 * **** *** **** ******** ** ******* ***** ************** consensus_2207#0 GATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGA 480 consensus_2207#1 GATAGCTTGT---TTGTAGATCC-TTCCACC--AGTGG-ACGGTTCTACG--TCTTGG-A 254 ***** * * ********** ******* **** ********** ****** * consensus_2207#0 GCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATT 540 consensus_2207#1 GCGCACG-ACCGTGCTCG--AGTATGAT--GTGACT-GGTAAGG---TGCAGGAAGAAT- 304 ******* ******* * ******** ***** ******* * * **** consensus_2207#0 GGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCAC 600 consensus_2207#1 -GGGACCT-GTCA--CGCA--TCTTTGAAGC--AGCAA-GCTTTGTACC---GAGCTCAC 352 ******* **** **** ******* ***** ********** * **** consensus_2207#0 TAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTA 660 consensus_2207#1 TTGGTG---TTGGACTGGCTTT--GGCCGATGGGAAAC-GAATTGC--GGTTCTGT-CTA 403 * ** ************* ************** ****** *** **** *** consensus_2207#0 GAGACCGGACAGGGAACCAATCAATCNCCCTC-AAGNGC--ACAAAAAGGTTCAC-CACC 716 consensus_2207#1 GAG-CCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTA 462 *** *** * * *** * ** * *** *** ** *** * * * *** * consensus_2207#0 GATGGAA---TACACACNTCACGTAAATACATGGCGCCNANG------------------ 755 consensus_2207#1 AATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTC 522 ** * * * ** * * ** * * consensus_2207#0 ------------------ consensus_2207#1 GTACTACCGCACGGATGA 540 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||