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Anopheles gambiae
cluster # 2207 cluster # 2207       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2207#0 length = 755 sequences # 1  
consensus_2207#1 length = 540 sequences # 1  

consensusID : consensus_2207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 755
fasta sequence
                              [TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTACTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTTCTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAGTTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTAACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGGGGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACTGATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGAGCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATTGGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCACTAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTAGAGACCGGACAGGGAACCAATCAATCNCCCTCAAGNGCACAAAAAGGTTCACCACCGATGGAATACACACNTCACGTAAATACATGGCGCCNANG]

[+] EMBL AL696516             [TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTACTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTTCTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAGTTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTAACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGGGGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACTGATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGAGCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATTGGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCACTAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTAGAGACCGGACAGGGAACCAATCAATCNCCCTCAAGNGCACAAAAAGGTTCACCACCGATGGAATACACACNTCACGTAAATACATGGCGCCNANG]


>consensus_2207#0 TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTA CTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTT CTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAG TTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGG ATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTA ACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGG GGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACT GATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGA GCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATT GGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCAC TAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTA GAGACCGGACAGGGAACCAATCAATCNCCCTCAAGNGCACAAAAAGGTTCACCACCGATG GAATACACACNTCACGTAAATACATGGCGCCNANG



consensusID : consensus_2207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence
                              [CAGGACCGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGTTTTTGAGTGGCAAACTGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTAACGCGATCGGCACCGACGGATGAGCAGTGCAATGTGACGGGGCTGGCGATATGGGAGTTCCAGGGACTTTCGCTGGAGCTGGTGAAGGCCATGCCGGATAAGGATACCGATAGCTTGTTTGTAGATCCTTCCACCAGTGGACGGTTCTACGTCTTGGAGCGCACGACCGTGCTCGAGTATGATGTGACTGGTAAGGTGCAGGAAGAATGGGACCTGTCACGCATCTTTGAAGCAGCAAGCTTTGTACCGAGCTCACTTGGTGTTGGACTGGCTTTGGCCGATGGGAAACGAATTGCGGTTCTGTCTAGAGCCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTAAATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTCGTACTACCGCACGGATGA]

[+] EMBL BX603437             [CAGGACCGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGTTTTTGAGTGGCAAACTGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTAACGCGATCGGCACCGACGGATGAGCAGTGCAATGTGACGGGGCTGGCGATATGGGAGTTCCAGGGACTTTCGCTGGAGCTGGTGAAGGCCATGCCGGATAAGGATACCGATAGCTTGTTTGTAGATCCTTCCACCAGTGGACGGTTCTACGTCTTGGAGCGCACGACCGTGCTCGAGTATGATGTGACTGGTAAGGTGCAGGAAGAATGGGACCTGTCACGCATCTTTGAAGCAGCAAGCTTTGTACCGAGCTCACTTGGTGTTGGACTGGCTTTGGCCGATGGGAAACGAATTGCGGTTCTGTCTAGAGCCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTAAATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTCGTACTACCGCACGGATGA]


>consensus_2207#1 CAGGACCGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGGATACGTTTTTGAGTGGCAA ACTGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTAACGCGATCGGCACCGACGGATGAG CAGTGCAATGTGACGGGGCTGGCGATATGGGAGTTCCAGGGACTTTCGCTGGAGCTGGTG AAGGCCATGCCGGATAAGGATACCGATAGCTTGTTTGTAGATCCTTCCACCAGTGGACGG TTCTACGTCTTGGAGCGCACGACCGTGCTCGAGTATGATGTGACTGGTAAGGTGCAGGAA GAATGGGACCTGTCACGCATCTTTGAAGCAGCAAGCTTTGTACCGAGCTCACTTGGTGTT GGACTGGCTTTGGCCGATGGGAAACGAATTGCGGTTCTGTCTAGAGCCGAAGGCACCATC AAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTAAATCTGGCCCTGTTCGCC TCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTCGTACTACCGCACGGATGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2207#0      TCTAGCAGAATCCCGAGGTTATAAACGCAAGCCTCATCAATGGTACGCGAAGGGTGTTTA 60
consensus_2207#1      ------------------------------------------------------------
                                                                                  

consensus_2207#0      CTTCTTTAACTACTTCGTGCAGCGGCAAACTATTCGCGTGCAGCAACCCATCCAGTCGTT 120
consensus_2207#1      ------------------------------------------------------------
                                                                                  

consensus_2207#0      CTGGACGTTCCAGCACCAGGCAACCATTTCCTTGCGCTCAACTACGGCTGCGGTAGTAAG 180
consensus_2207#1      ------------------------------------------------------------
                                                                                  

consensus_2207#0      TTCTTCCAGTGGAACCCACAGGACCTGAGTGTTCGTGGGACTGTTCAAGGCGCACACGGG 240
consensus_2207#1      ------------------CAGGACC-GAGTGTTCGTGGGACTGTTCAAGGCGCACACGGG 41
                                        ******* **********************************

consensus_2207#0      ATACGGTTTTNTGAGTGGCAAACGTGTGTGTTGCCGCANGATGAGAAGCTTTATCTAGTA 300
consensus_2207#1      ATACG--TTTTTGAGTGGCAAAC---TGTGGCTGCGCAGGATGAGAAGCTTTATCTAGTA 96
                      *****  *** ************   ****    **** *********************

consensus_2207#0      ACGCGATCGTGCGACCGAACGNGATGAGCACTGCAATGTGACGGGGCTTGTCCGATATGG 360
consensus_2207#1      ACGCGATCG-GC-ACCGA--CGGATGAGCAGTGCAATGTGACGGGGCTGG--CGATATGG 150
                      ********* ** *****    ******** ***************** *  ********

consensus_2207#0      GGAGTTACCANCGACTATTCGCTGGGAGTTGGTGAANGCCATAGACCGGATAAGGATACT 420
consensus_2207#1      G-AGTT-CCAGGGACT-TTCGCTGG-AGCTGGTGAAGGCCATG--CCGGATAAGGATACC 204
                      * **** ***  **** ******** ** ******* *****   ************** 

consensus_2207#0      GATAGACTATGTTTTGTAGATCCCTTCCACCCAGGTGGGACGGTTCTACAGTTCTTGGGA 480
consensus_2207#1      GATAGCTTGT---TTGTAGATCC-TTCCACC--AGTGG-ACGGTTCTACG--TCTTGG-A 254
                      *****  * *   ********** *******   **** **********   ****** *

consensus_2207#0      GCGCACGTACCGTGCCTGGAAGTATGATTGTTGACTTGGTAAGGGTTCAGNGAANGAATT 540
consensus_2207#1      GCGCACG-ACCGTGCTCG--AGTATGAT--GTGACT-GGTAAGG---TGCAGGAAGAAT- 304
                      ******* *******  *  ********   ***** *******       * * **** 

consensus_2207#0      GGGGACCTTGTCAACCGCAATCTTTTGAAGGCAAGCAACGCTTTGTACCCGAGGCTTCAC 600
consensus_2207#1      -GGGACCT-GTCA--CGCA--TCTTTGAAGC--AGCAA-GCTTTGTACC---GAGCTCAC 352
                       ******* ****  ****    *******   ***** **********   *   ****

consensus_2207#0      TAGGCCGGTTTGGACTGGCTTTTGGGCCGATGGGAAACCGAATTGNAGGGTACTGTACTA 660
consensus_2207#1      TTGGTG---TTGGACTGGCTTT--GGCCGATGGGAAAC-GAATTGC--GGTTCTGT-CTA 403
                      * **     *************  ************** ******   *** **** ***

consensus_2207#0      GAGACCGGACAGGGAACCAATCAATCNCCCTC-AAGNGC--ACAAAAAGGTTCAC-CACC 716
consensus_2207#1      GAG-CCGAAGGCACCATCAAACCCTCACGCTCCAAGCGCTCACACGATGATCCACTCGTA 462
                      *** *** *      * *** *  ** * *** *** **  ***  * * * *** *   

consensus_2207#0      GATGGAA---TACACACNTCACGTAAATACATGGCGCCNANG------------------ 755
consensus_2207#1      AATCTGGCCCTGTTCGCCTCCCCCCATAACGGTGTACAATCAAATGCAAAGGAACAGCTC 522
                       **       *   * * ** *   *  **   *  *                       

consensus_2207#0      ------------------
consensus_2207#1      GTACTACCGCACGGATGA 540
                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)