These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CCGCACGAAGGTGGAATCGCTGCGCAAGGAAGCAATGGTGCTGCGCGACAAGAAGGACTTTCTGGCCATGTCGGTGGATCTGCTCAAGAACAACGAATACCTGTCCGGACTAAATGAGAATGAGCGTGAAGAGATTGACTGTTACGTGCAGCGGATCAGCAGCCGGCTCGGTACGGTCGAGCTGAACGTGTGCACGGTGCGCGACCAGGCGCAGGAAGATTCGCTGCACCACGTCAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGACACGAGCGTGTACACGGACGTCGACCCGCACACGGTCTGTACGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTGACCCAGCAAACGATCGTCCACTGAAGGAAGAAGAATAAGGGACATGTTGGGACCGTGACCGAAACGCAAATTGGGAGGGGGGAAGGAGGATAAGAAACACAGCAGCGCATGGGCGCATAGCATATGGTACAACGGGTTGGGAATTCCGGTCAGGCATACCTCGTTA] [+] EMBL BM614262 [CCGCACGAAGGTGGAATCGCTGCGCAAGGAAGCAATGGTGCTGCGCGACAAGAAGGACTTTCTGGCCATGTCGGTGGATCTGCTCAAGAACAACGAATACCTGTCCGGACTAAATGAGAATGAGCGTGAAGAGATTGACTGTTACGTGCAGCGGATCAGCAGCCGGCTCGGTACGGTCGAGCTGAACGTGTGCACGGTGCGCGACCAGGCGCAGGAAGATTCGCTGCACCACGTCAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGACACGAGCGTGTACACGGACGTCGACCCGCACACGGTCTGTACGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTGACCCAGCAAACGATCGTCCACTGAAGGAAGAAGAATAAGGGACATGTTGGGACCGTGACCGAAACGCAAATTGGGAGGGGGGAAGGAGGATAAGAAACACAGCAGCGCATGGGCGCATAGCATATGGTACAACGGGTTGGGAATTCCGGTCAGGCATACCTCGTTA] consensusID : consensus_2208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [CGACCCACGCGTCCGCGGACGCGTGGGCGGCGAACGAAGAAAACGGTGCGTGCACCTTCAGCGTGAAAACAGAAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGGACACGAGCGTGTACACGGACGTCGACCCGCACACGGTCTGTACGGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTTACCCAGCAAACGATCGTCCACTGAAGGAACAAGAAGAAAGGACATGCTGGGACCGTGACCGAA] [+] EMBL BM599487 [CGACCCACGCGTCCGCGGACGCGTGGGCGGCGAACGAAGAAAACGGTGCGTGCACCTTCAGCGTGAAAACAGAAACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGCCAACAGTATCTGAACGCGTGCAGCACCACCGGACACGAGCGTGTACACGGACGTCGACCCGCACACGGTCTGTACGGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACGATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTTACCCAGCAAACGATCGTCCACTGAAGGAACAAGAAGAAAGGACATGCTGGGACCGTGACCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2208#0 CCGCACGAAGGTGGAATCGCTGCGCAAGGAAGCAATGGTGCTGCGCGACAAGAAGGACTT 60 consensus_2208#1 ------------------------------------------------------------ consensus_2208#0 TCTGGCCATGTCGGTGGATCTGCTCAAGAACAACGAATACCTGTCCGGACTAAATGAGAA 120 consensus_2208#1 ------------------------------------------------------------ consensus_2208#0 TGAGCGTGAAGAGATTGACTGTTACGTGCAGCGGATCAGCAGCCGGCTCGGTACGGTCGA 180 consensus_2208#1 -------------------------------------------CGACCCA-CGCGTCCG- 15 ** * * ** ** consensus_2208#0 GCTGAACGTGTGCACGGTGCGCGACCA----GGCGCAGGAAGATTCGCTGC-ACCACGTC 235 consensus_2208#1 --CGGACGCGTGGGCGGCGAACGAAGAAAACGGTGCGTGCACCTTCAGCGTGAAAACAGA 73 * *** *** *** * *** * ** ** * * *** * * ** consensus_2208#0 AACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGC 295 consensus_2208#1 AACAGCCTGATCGATCTGATCATCGCGAGCGCCGACCCGGTAATTTCGCGCCAAAAGTGC 133 ************************************************************ consensus_2208#0 CAACAGTATCTGAACGCGTGCAGCACCACCG-ACACGAGCGTGTACACGGACGTCGACCC 354 consensus_2208#1 CAACAGTATCTGAACGCGTGCAGCACCACCGGACACGAGCGTGTACACGGACGTCGACCC 193 ******************************* **************************** consensus_2208#0 GCACACGGTCTGTACGG-ACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACG 413 consensus_2208#1 GCACACGGTCTGTACGGGACAAAAAGTTCGAGAGCGTCCTGCTCGGCTGCACGCTCGACG 253 ***************** ****************************************** consensus_2208#0 ATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTGACCCAGCAAACGA 473 consensus_2208#1 ATCAGAAGACGATCAAGAAGCGGCTGCAGGCGCTGCTGGTCTACCTTACCCAGCAAACGA 313 ********************************************** ************* consensus_2208#0 TCGTCCACTGAAGGAAGAAGAATAAGGGACATGTTGGGACCGTGACCGAAACGCAAATTG 533 consensus_2208#1 TCGTCCACTGAAGGAACAAGAAGAAAGGACATGCTGGGACCGTGACCGAA---------- 363 **************** ***** ** ******* **************** consensus_2208#0 GGAGGGGGGAAGGAGGATAAGAAACACAGCAGCGCATGGGCGCATAGCATATGGTACAAC 593 consensus_2208#1 ------------------------------------------------------------ consensus_2208#0 GGGTTGGGAATTCCGGTCAGGCATACCTCGTTA 626 consensus_2208#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||