These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 803 fasta sequence [TGCTCGAGGCAGAATTGCCACGAGGTTCAAACTTATTGTGCAAAAATCCCGCTTCTCGTAGTGTTAGTCGTTCCATTTGCACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAACGCGGTACCTCGATTCGACCGTGCTGCATTCGTGTGCAACGTTCCGGCAACACCTGTCACTACTTTGCAAAGGTCNGCGTGAAGCCACAGGGNACAAAAAATCAGNCACAGGCCTGTATTGCCGGCCANGGAAACGAANGCAAGCACCTTGTACCCACGTGGGACTTGCACCGGGACCTTGCTTGCAAAAGACNGCCGGATTCNTCGGATACNAAGCAAGCGCCAACCGGTGGAACGAACGGGACAGGNCCCGGAAAAGAGCAACTGGGGTTGCCNAGCAAAGGAAACAGGTCACCCGGGGCACCGGGATCCGTAAGACNCCCATTTCCNAAGNGGAACCANCGGGGAAGGCTANTCGGGGAACAGGCATCGGCTGGTAACCCCACGGAAACAGNTTACCGGTTGNCCCGNAACGAATTAGGGGGCATACTTCCGACACCTNATGGGAATCCNGACCAGGNTCNACANNGGCAAANCANCGGCCAACAGGCCATTCCTTCCGGGGGAAACCACAATACCAATTGGAGCNGACCCTGGGGCGTTGATTTCCTGNACACACAATTCCGACACCACAAAGCTTAAATTCCTTGGCAAACCCGACAGCAGGCCGG] [+] EMBL AL696552 [TGCTCGAGGCAGAATTGCCACGAGGTTCAAACTTATTGTGCAAAAATCCCGCTTCTCGTAGTGTTAGTCGTTCCATTTGCACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAACGCGGTACCTCGATTCGACCGTGCTGCATTCGTGTGCAACGTTCCGGCAACACCTGTCACTACTTTGCAAAGGTCNGCGTGAAGCCACAGGGNACAAAAAATCAGNCACAGGCCTGTATTGCCGGCCANGGAAACGAANGCAAGCACCTTGTACCCACGTGGGACTTGCACCGGGACCTTGCTTGCAAAAGACNGCCGGATTCNTCGGATACNAAGCAAGCGCCAACCGGTGGAACGAACGGGACAGGNCCCGGAAAAGAGCAACTGGGGTTGCCNAGCAAAGGAAACAGGTCACCCGGGGCACCGGGATCCGTAAGACNCCCATTTCCNAAGNGGAACCANCGGGGAAGGCTANTCGGGGAACAGGCATCGGCTGGTAACCCCACGGAAACAGNTTACCGGTTGNCCCGNAACGAATTAGGGGGCATACTTCCGACACCTNATGGGAATCCNGACCAGGNTCNACANNGGCAAANCANCGGCCAACAGGCCATTCCTTCCGGGGGAAACCACAATACCAATTGGAGCNGACCCTGGGGCGTTGATTTCCTGNACACACAATTCCGACACCACAAAGCTTAAATTCCTTGGCAAACCCGACAGCAGGCCGG] consensusID : consensus_2215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGGGAGGACGCAAACTTAATTGTGCAAAAATCCCGCTTCCTCGTAGTGTTAGTCGTTTCCATTTTACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACCGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAACGCGGTACCTCGATTCGCCGTGCTGCATTCGTGTGCAACGTTCCGCGCACCACCCTGTCCACCTACTTGAAGTCGCTGAAGCACGGCAAAATCAGCAAGCTGTTGCCGCAGGAAGAGCAAGCACTGTACCAGTGGATGACGGACTGCTGCAAGCGCGGCTTCTCGATCAAGCAGCGCAACGTGGAGACGGCAGCCGAAGCACTGGTGCAGAAGAACGTCCCGGCCCGGTCGCACCCCTTCCAGGACACGGAGTTTGGGCGGCGCTGCTACCAGAAGTTCGTCCGACGATGGCTCTCGATTGATCGCGTCAAGGAGCGCAAGCATCTCGGCACCATTATGGACTGGTATCTGCACATCGAAAGCTATCTGAACGAGGCGAACCTGTTCGACATCCTGAACCATCCGGCCCGCGTCTTCGTGTGCGACGAGCTGCGGTTCCGGG] [+] EMBL BM610319 [CCGGGAGGACGCAAACTTAATTGTGCAAAAATCCCGCTTCCTCGTAGTGTTAGTCGTTTCCATTTTACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGATAGCAACCGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCATCAACCTGATCGTTGAACGCGGTACCTCGATTCGCCGTGCTGCATTCGTGTGCAACGTTCCGCGCACCACCCTGTCCACCTACTTGAAGTCGCTGAAGCACGGCAAAATCAGCAAGCTGTTGCCGCAGGAAGAGCAAGCACTGTACCAGTGGATGACGGACTGCTGCAAGCGCGGCTTCTCGATCAAGCAGCGCAACGTGGAGACGGCAGCCGAAGCACTGGTGCAGAAGAACGTCCCGGCCCGGTCGCACCCCTTCCAGGACACGGAGTTTGGGCGGCGCTGCTACCAGAAGTTCGTCCGACGATGGCTCTCGATTGATCGCGTCAAGGAGCGCAAGCATCTCGGCACCATTATGGACTGGTATCTGCACATCGAAAGCTATCTGAACGAGGCGAACCTGTTCGACATCCTGAACCATCCGGCCCGCGTCTTCGTGTGCGACGAGCTGCGGTTCCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2215#0 TGCTCGAGGCAGAATTGCCACGAGGTT-CAAACTTA-TTGTGCAAAAATCCCGCTTC-TC 57 consensus_2215#1 -----------------CCGGGAGGACGCAAACTTAATTGTGCAAAAATCCCGCTTCCTC 43 ** **** ******** ******************** ** consensus_2215#0 GTAGTGTTAGTCGTTCCATTTGCACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGA 117 consensus_2215#1 GTAGTGTTAGTCGTTTCCATTTTACTGCACGCTCCACCACAGTATGTCCGAGAGCCGCGA 103 *************** * ** ************************************* consensus_2215#0 TAGCAAC-GTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCAT 176 consensus_2215#1 TAGCAACCGTTGTCGCAAAACGTCCAGCCCGTACACCAAGCAGGATCTGAAGAATGCCAT 163 ******* **************************************************** consensus_2215#0 CAACCTGATCGTTGAACGCGGTACCTCGATTCGACCGTGCTGCATTCGTGTGCAACGTTC 236 consensus_2215#1 CAACCTGATCGTTGAACGCGGTACCTCGATTCG-CCGTGCTGCATTCGTGTGCAACGTTC 222 ********************************* ************************** consensus_2215#0 CG-GCAACACCTGTCACTACTTTGCAAAGGTCNGCGTGAAGCCACAGGGNACAAAAAATC 295 consensus_2215#1 CGCGCACCACCC-TGTCCACCTACTTGAAGTCGC--TGAAGC---ACGGCA----AAATC 272 ** *** **** * * ** * * *** ****** * ** * ***** consensus_2215#0 AGNCACAGGCCTGTATTGCCGGCCANGGAAACGAANGCAAGCACCTTGTACCCACGTGGG 355 consensus_2215#1 AG---CAAGC---TGTTGCCG--CAGGAAGA-----GCAAGCAC--TGTACCAGTGGATG 317 ** ** ** * ****** ** * * * ******** ****** * * consensus_2215#0 ACTTGCACCGGGACCTTGCTTGCAAAAGACNGCCGGATTCNTCGGATACNAAGCAAGCGC 415 consensus_2215#1 AC--------GGAC--TGCT-GCAA------GCGCGGCTTCTCG---ATCAAGCA-GCGC 356 ** **** **** **** ** * * *** * ***** **** consensus_2215#0 CAACCGGTGGAACGAACGGGACAGGNCCCGGAAAAGAGCAACTGGGGTTGCCNAGCAAAG 475 consensus_2215#1 -AAC--GTGGAGACGGCAGCCGAAGCACTGGTGCAGAAGAAC----GT--CCCGGC---- 403 *** ***** * * * * * ** *** *** ** ** ** consensus_2215#0 GAAACAGGTCACCCGGGGCACCGGGATCCGTAAGACNCCCATTTCCNAAGNGGAACCANC 535 consensus_2215#1 ----CCGGTC-------GCACCC---CTTCCAGGACACGGAGTT--TGGGCGGCGCTGCT 447 * **** ***** * *** * * ** * ** * consensus_2215#0 GGGGAAGGCTANTCGGGGAACAGGCATCGGCTGGTAACCCCACGGAAACAGNTTACCGGT 595 consensus_2215#1 ACCAGAAGTTCGTCCGACGATGGCTCTCGATTGATCGCGTCAAGGAGCGCAAGCATCT-C 506 * * * ** * * * *** ** * * ** *** * * consensus_2215#0 TGNCCCGNAACGAATTAGGGGGCATACTTCCGACACCTNATGGGAATCCNGACCAGGNTC 655 consensus_2215#1 GGCACCATTATGGACTGGTATCTGCACATCGAAAGCTATCTGAACGAGGCGAACCTGTTC 566 * ** * * * * * ** ** * * ** ** * * ** consensus_2215#0 NACANNGGCAAANCANCGGCCAACAGGCCATTCCTTCCGGGGGAAACCACAATACCAATT 715 consensus_2215#1 GACATCC-TGAACCATC---CGGCCCGCGTCTTCGTGTGCGACGAGCTGCGGTTCCGGG- 621 *** ** ** * * * ** * * * * * * * * * ** consensus_2215#0 GGAGCNGACCCTGGGGCGTTGATTTCCTGNACACACAATTCCGACACCACAAAGCTTAAA 775 consensus_2215#1 ------------------------------------------------------------ consensus_2215#0 TTCCTTGGCAAACCCGACAGCAGGCCGG 803 consensus_2215#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||