These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [GGGCAAGAATTGGCCCCGCACGGATTATAGGGCCGTGAGCGTGTGGTGGTAGGCCTGGGATACGCTGAAATGAAGGACATTCTCTGCAACGAAGCGTTCCAGGGTCGGCGGACAATTTCTTCATATCGGTTGCGTACATTTGGGAACAAGATTGGGCATCANCTGTACAGATGGATCNTTCTGGAACGAGCAACGCAGCTTCGTCACGCGAAACCTCCGGCCAGAGTGGGCTACCGGAACGGCAAGACGCGATGCACGCACACAGATCCAAAACCCGANAGCTTGGACCGAAACTGGTGGACCGCTTGCCTGGGACAACCGTTGAATGTGCAGCGAAACCGAGTTACCNTTNGGAGGGAGCCCACAAGGGAATAACCCAAGTAACCCCTTTCCAGCGTACCGGCATTNCCCAAGAGAGCGGTNTTTCAACTTNCAACACAACCNGTGTTGGGACTATGGGTAGGGAGGGAAACCCGGGAAATNANCTCCGTNGTGNACACCCATTCTGTGGTGCCGTGCCNTTATCGCAAAAAAGNTTTTGGTGGGCAGACCCTNCAACGGGACAAACGGACCNTACTGGAAT] [+] EMBL AL696652 [GGGCAAGAATTGGCCCCGCACGGATTATAGGGCCGTGAGCGTGTGGTGGTAGGCCTGGGATACGCTGAAATGAAGGACATTCTCTGCAACGAAGCGTTCCAGGGTCGGCGGACAATTTCTTCATATCGGTTGCGTACATTTGGGAACAAGATTGGGCATCANCTGTACAGATGGATCNTTCTGGAACGAGCAACGCAGCTTCGTCACGCGAAACCTCCGGCCAGAGTGGGCTACCGGAACGGCAAGACGCGATGCACGCACACAGATCCAAAACCCGANAGCTTGGACCGAAACTGGTGGACCGCTTGCCTGGGACAACCGTTGAATGTGCAGCGAAACCGAGTTACCNTTNGGAGGGAGCCCACAAGGGAATAACCCAAGTAACCCCTTTCCAGCGTACCGGCATTNCCCAAGAGAGCGGTNTTTCAACTTNCAACACAACCNGTGTTGGGACTATGGGTAGGGAGGGAAACCCGGGAAATNANCTCCGTNGTGNACACCCATTCTGTGGTGCCGTGCCNTTATCGCAAAAAAGNTTTTGGTGGGCAGACCCTNCAACGGGACAAACGGACCNTACTGGAAT] consensusID : consensus_2234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [CCGCGGACGCGTGGGATTCTCTGCAACGAAGCGTTCCAGGGTCGGCCGGACAATTTCTTCATTCGGTTGCGTACATTGGGAACAAGATTGGGCATCACCTGTACAGATGGATCGTTCTGGAACGAGCAACGCAGCTTCGTCACGCGACACCTCCGCCAGGTGGGCTACGGACGGCAGGCGATGCACGAACAGATCCAAACCGAGCTGACCGAACTGCTGGACGTGCTGGACACCCGTGCGGAGCAACCGCTCTGGCCAGGATCGATCCTCGCGCTCAGCGTCATCAACGTGCTGTGGACGATCGTGACTGGCTCTCGAGTGGCCCGAGAAGATGATCGATTGCAGCGACTGCTCGAGTTGCTGCAGGAACGCTCGAAAGTGTTCGACATGGCCGGTGGAACCTTAAACCAGCTGCCCTGGTTGCGTTTCATCGCCCCGGAATGGAGCGGCTACAATCTGGTACGTCGTTTCAACAAGCAGCTGACCGAGTTCTTCTATCCCAC] [+] EMBL BM630623 [CCGCGGACGCGTGGGATTCTCTGCAACGAAGCGTTCCAGGGTCGGCCGGACAATTTCTTCATTCGGTTGCGTACATTGGGAACAAGATTGGGCATCACCTGTACAGATGGATCGTTCTGGAACGAGCAACGCAGCTTCGTCACGCGACACCTCCGCCAGGTGGGCTACGGACGGCAGGCGATGCACGAACAGATCCAAACCGAGCTGACCGAACTGCTGGACGTGCTGGACACCCGTGCGGAGCAACCGCTCTGGCCAGGATCGATCCTCGCGCTCAGCGTCATCAACGTGCTGTGGACGATCGTGACTGGCTCTCGAGTGGCCCGAGAAGATGATCGATTGCAGCGACTGCTCGAGTTGCTGCAGGAACGCTCGAAAGTGTTCGACATGGCCGGTGGAACCTTAAACCAGCTGCCCTGGTTGCGTTTCATCGCCCCGGAATGGAGCGGCTACAATCTGGTACGTCGTTTCAACAAGCAGCTGACCGAGTTCTTCTATCCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2234#0 GGGCAAGAATTGGCCCCGCACGGATTATAGGGCCGTGAGCGTGTGGTGGTAGGCCTGGGA 60 consensus_2234#1 ------------------------------------------------------------ consensus_2234#0 TACGCTGAAATGAAGGACATTCTCTGCAACGAAGCGTTCCAGGGTCGGC-GGACAATTTC 119 consensus_2234#1 -CCGCGGACGCGTGGG--ATTCTCTGCAACGAAGCGTTCCAGGGTCGGCCGGACAATTTC 57 *** ** * ** ******************************* ********** consensus_2234#0 TTCATATCGGTTGCGTACATTTGGGAACAAGATTGGGCATCANCTGTACAGATGGATCNT 179 consensus_2234#1 TTCAT-TCGGTTGCGTACATT-GGGAACAAGATTGGGCATCACCTGTACAGATGGATCGT 115 ***** *************** ******************** *************** * consensus_2234#0 TCTGGAACGAGCAACGCAGCTTCGTCACGCGAAACCTCCGGCCAGAGTGGGCTACCGGAA 239 consensus_2234#1 TCTGGAACGAGCAACGCAGCTTCGTCACGCGACACCTCCG-CCAG-GTGGGCTAC--GGA 171 ******************************** ******* **** ********* * * consensus_2234#0 CGGCAAGACGCGATGCACGCACACAGATCCAAAACCCGANAGCTTGGACCG--AAACTGG 297 consensus_2234#1 CGGCAGG---CGATGCACGAAC--AGATCCAAA-CCGAGCTGACCGAACTGCTGGACGTG 225 ***** * ********* ** ********* ** * * ** * ** * consensus_2234#0 TGGACCGCTTGCCTGGGACAACCGTTGAATGTGCAGCGAAACCGAGTTACCNTTNGGAGG 357 consensus_2234#1 CTGGACACCCGTGCGGAGCAACCGCTCTGGCCAGGATCGATCCTCGC-GCTCAGCGTCAT 284 * * * * ** ****** * * ** * * * consensus_2234#0 GAGCCCACAAGGGAATAACCCAAGTAACCCCTTTCCAGCGTACCGGCATTNCCCAAGAGA 417 consensus_2234#1 CAACGTGCTGTGGACGATCGTGACTGGCTCTCGAGTGGCCCGAGAAGATGATCGATTGCA 344 * * * *** * * * * * * ** ** * * * consensus_2234#0 GCGGTNTTTCAACTTNCAACACAACCNGTGTTGGGACTATGGGTAGGGAGGGAAACCCGG 477 consensus_2234#1 GCGACTGCTCGAGTTGCTGCAGGAACGCTCGAAAGTGTTCGACATGGCCGGTGGAACCTT 404 *** ** * ** * ** * * * * * * ** ** * ** consensus_2234#0 GAAATNANCTCCGTNGTGNACACCCATTCTGTGGTGCCGTGCCNTTATCGCAAAAAAGNT 537 consensus_2234#1 AAACCAGCTGCCCTGGTTG-----CGTTTCATCGCCCCGGAATGGAGCGGCTACAA---- 455 ** ** * ** * ** * * *** ** * ** consensus_2234#0 TTTGGTGGGCAGACCCTNCAACGGGACAAACGGACCNTACTGGAAT-- 583 consensus_2234#1 TCTGGTACGTCGTTTCAACAAGCAGCTGACCGAGTTCTTCTATCCCAC 503 * **** * * * *** * * ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||