cluster # 2260

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Anopheles gambiae
cluster # 2260 cluster # 2260 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2260#0 length = 494 sequences # 1

consensus_2260#1 length = 473 sequences # 1

consensusID : consensus_2260#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [GATCGCCCGAGGTATGCTGAGCGCGTACGCCGCTGGCTGGAGGCGGCCCAGAAAAGCCGCTACGCCGGCCAGTGCTTCGCGGAGGAAAACTATCTGTCCGGCAAAACGTTGGCCACGATCGGCGAGATGAAGTACCAGTTTCTCGAGCTGCTCGTCTCGATCGGGTTCGTGCCGATCGATCTGTTCGGGCGCAGCCGCGCCAAACGGCAGCAGCTCGACGATCTGCTCAAGCTGACCGGGGCGGAGATCAACGTGAACGGCACGAACAATCGGCTGCTGGCGGCCATCCTGTGTGCCGCCCTCTACCCGAACGTGGTGAAAATTCTGACGCCGGAGAAAAGCTTCGTCACCGGTGCGGTCGGTGCAGTGCCGCGGCTGCCGCAGGCGTCCGATTTGCGCTTCAAAACGCAGGAGGACGGTTACGTCGCGCTGCACCCGTCGTCGGTGAACGCGACCGTCGGTTACTTCGGCTCGCCGTTTCTGGTGTACCAGGA]

[+] EMBL AL930290             [GATCGCCCGAGGTATGCTGAGCGCGTACGCCGCTGGCTGGAGGCGGCCCAGAAAAGCCGCTACGCCGGCCAGTGCTTCGCGGAGGAAAACTATCTGTCCGGCAAAACGTTGGCCACGATCGGCGAGATGAAGTACCAGTTTCTCGAGCTGCTCGTCTCGATCGGGTTCGTGCCGATCGATCTGTTCGGGCGCAGCCGCGCCAAACGGCAGCAGCTCGACGATCTGCTCAAGCTGACCGGGGCGGAGATCAACGTGAACGGCACGAACAATCGGCTGCTGGCGGCCATCCTGTGTGCCGCCCTCTACCCGAACGTGGTGAAAATTCTGACGCCGGAGAAAAGCTTCGTCACCGGTGCGGTCGGTGCAGTGCCGCGGCTGCCGCAGGCGTCCGATTTGCGCTTCAAAACGCAGGAGGACGGTTACGTCGCGCTGCACCCGTCGTCGGTGAACGCGACCGTCGGTTACTTCGGCTCGCCGTTTCTGGTGTACCAGGA]




>consensus_2260#0
GATCGCCCGAGGTATGCTGAGCGCGTACGCCGCTGGCTGGAGGCGGCCCAGAAAAGCCGC
TACGCCGGCCAGTGCTTCGCGGAGGAAAACTATCTGTCCGGCAAAACGTTGGCCACGATC
GGCGAGATGAAGTACCAGTTTCTCGAGCTGCTCGTCTCGATCGGGTTCGTGCCGATCGAT
CTGTTCGGGCGCAGCCGCGCCAAACGGCAGCAGCTCGACGATCTGCTCAAGCTGACCGGG
GCGGAGATCAACGTGAACGGCACGAACAATCGGCTGCTGGCGGCCATCCTGTGTGCCGCC
CTCTACCCGAACGTGGTGAAAATTCTGACGCCGGAGAAAAGCTTCGTCACCGGTGCGGTC
GGTGCAGTGCCGCGGCTGCCGCAGGCGTCCGATTTGCGCTTCAAAACGCAGGAGGACGGT
TACGTCGCGCTGCACCCGTCGTCGGTGAACGCGACCGTCGGTTACTTCGGCTCGCCGTTT
CTGGTGTACCAGGA

consensusID : consensus_2260#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [GCAGATCGCACGAGGTTATCTGTCCGCCCTGGCCGGTTGACGTGCGGATAGGCAAGCTGATGCTGTTCGGCGCGATCTTCCAGTGTCTGGACAGCGTGCTGACGATGGCCGCCATACTTAGCTACAAGAGCCCGTTCGTGTCGCCGTTCGGGAAGCGGGACGAGGCCGACAACCGCAAGCGCCAGTTTGCGATCGCCAACAGCGACCATCTGACGATGCTGAGCGCGTACCGGCGTTGGCTGGAGGCGGCCAGAAAAGCCGNGTACGCCGGCCAGTGCTTTGCGGAGGAAAACTATCTGTCCGGCAAAACGTTGGCCACGATCGGCGAGATGAAGTACCAGTTTCTCGAGCTGCTCGTCTCGATCGGGTTCGTGCCGATCGATCTGTCCGGGCGCAGCCGCGCCAAACGGCAGCAGCTCGACGATCTGGTCAAGCTGACCGGGGCGGAGATCAACCGTGAACGGGACGAACAA]

[+] EMBL AL696836             [GCAGATCGCACGAGGTTATCTGTCCGCCCTGGCCGGTTGACGTGCGGATAGGCAAGCTGATGCTGTTCGGCGCGATCTTCCAGTGTCTGGACAGCGTGCTGACGATGGCCGCCATACTTAGCTACAAGAGCCCGTTCGTGTCGCCGTTCGGGAAGCGGGACGAGGCCGACAACCGCAAGCGCCAGTTTGCGATCGCCAACAGCGACCATCTGACGATGCTGAGCGCGTACCGGCGTTGGCTGGAGGCGGCCAGAAAAGCCGNGTACGCCGGCCAGTGCTTTGCGGAGGAAAACTATCTGTCCGGCAAAACGTTGGCCACGATCGGCGAGATGAAGTACCAGTTTCTCGAGCTGCTCGTCTCGATCGGGTTCGTGCCGATCGATCTGTCCGGGCGCAGCCGCGCCAAACGGCAGCAGCTCGACGATCTGGTCAAGCTGACCGGGGCGGAGATCAACCGTGAACGGGACGAACAA]




>consensus_2260#1
GCAGATCGCACGAGGTTATCTGTCCGCCCTGGCCGGTTGACGTGCGGATAGGCAAGCTGA
TGCTGTTCGGCGCGATCTTCCAGTGTCTGGACAGCGTGCTGACGATGGCCGCCATACTTA
GCTACAAGAGCCCGTTCGTGTCGCCGTTCGGGAAGCGGGACGAGGCCGACAACCGCAAGC
GCCAGTTTGCGATCGCCAACAGCGACCATCTGACGATGCTGAGCGCGTACCGGCGTTGGC
TGGAGGCGGCCAGAAAAGCCGNGTACGCCGGCCAGTGCTTTGCGGAGGAAAACTATCTGT
CCGGCAAAACGTTGGCCACGATCGGCGAGATGAAGTACCAGTTTCTCGAGCTGCTCGTCT
CGATCGGGTTCGTGCCGATCGATCTGTCCGGGCGCAGCCGCGCCAAACGGCAGCAGCTCG
ACGATCTGGTCAAGCTGACCGGGGCGGAGATCAACCGTGAACGGGACGAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2260#0      ------------------------------------------------------------
consensus_2260#1      GCAGATCGCACGAGGTTATCTGTCCGCCCTGGCCGGTTGACGTGCGGATAGGCAAGCTGA 60
                                                                                  

consensus_2260#0      ------------------------------------------------------------
consensus_2260#1      TGCTGTTCGGCGCGATCTTCCAGTGTCTGGACAGCGTGCTGACGATGGCCGCCATACTTA 120
                                                                                  

consensus_2260#0      ------------------------------------------------------------
consensus_2260#1      GCTACAAGAGCCCGTTCGTGTCGCCGTTCGGGAAGCGGGACGAGGCCGACAACCGCAAGC 180
                                                                                  

consensus_2260#0      -----------------------GATCGCCCGAGGTATGCTGAGCGCGTAC-GCCGCTGG 36
consensus_2260#1      GCCAGTTTGCGATCGCCAACAGCGACCATCTGACG-ATGCTGAGCGCGTACCGGCGTTGG 239
                                             ** *  * ** * *************** * ** ***

consensus_2260#0      CTGGAGGCGGCCCAGAAAAGCCGC-TACGCCGGCCAGTGCTTCGCGGAGGAAAACTATCT 95
consensus_2260#1      CTGGAGGCGGCC-AGAAAAGCCGNGTACGCCGGCCAGTGCTTTGCGGAGGAAAACTATCT 298
                      ************ **********  ***************** *****************

consensus_2260#0      GTCCGGCAAAACGTTGGCCACGATCGGCGAGATGAAGTACCAGTTTCTCGAGCTGCTCGT 155
consensus_2260#1      GTCCGGCAAAACGTTGGCCACGATCGGCGAGATGAAGTACCAGTTTCTCGAGCTGCTCGT 358
                      ************************************************************

consensus_2260#0      CTCGATCGGGTTCGTGCCGATCGATCTGTTCGGGCGCAGCCGCGCCAAACGGCAGCAGCT 215
consensus_2260#1      CTCGATCGGGTTCGTGCCGATCGATCTGTCCGGGCGCAGCCGCGCCAAACGGCAGCAGCT 418
                      ***************************** ******************************

consensus_2260#0      CGACGATCTGCTCAAGCTGACCGGGGCGGAGATCAAC-GTGAACGGCACGAACAATCGGC 274
consensus_2260#1      CGACGATCTGGTCAAGCTGACCGGGGCGGAGATCAACCGTGAACGGGACGAACAA----- 473
                      ********** ************************** ******** ********     

consensus_2260#0      TGCTGGCGGCCATCCTGTGTGCCGCCCTCTACCCGAACGTGGTGAAAATTCTGACGCCGG 334
consensus_2260#1      ------------------------------------------------------------
                                                                                  

consensus_2260#0      AGAAAAGCTTCGTCACCGGTGCGGTCGGTGCAGTGCCGCGGCTGCCGCAGGCGTCCGATT 394
consensus_2260#1      ------------------------------------------------------------
                                                                                  

consensus_2260#0      TGCGCTTCAAAACGCAGGAGGACGGTTACGTCGCGCTGCACCCGTCGTCGGTGAACGCGA 454
consensus_2260#1      ------------------------------------------------------------
                                                                                  

consensus_2260#0      CCGTCGGTTACTTCGGCTCGCCGTTTCTGGTGTACCAGGA 494
consensus_2260#1      ----------------------------------------