These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTGCCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGATTGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTTTGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAAGGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATGCATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTGAAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAATCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG] [+] EMBL AL696912 [GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTGCCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGATTGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTTTGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAAGGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATGCATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTGAAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAATCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG] consensusID : consensus_2269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAAGTCNCCGTACATGCTATAGATACAAGTACNCAGATACATGAAATGCATCATGGTGAATGGAGTAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGTAAGTAAATTTAAAATTGTAAACTG] [+] EMBL BX628995 [ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAAGTCNCCGTACATGCTATAGATACAAGTACNCAGATACATGAAATGCATCATGGTGAATGGAGTAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGTAAGTAAATTTAAAATTGTAAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2269#0 GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTG 60 consensus_2269#1 ------------------------------------------------------------ consensus_2269#0 CCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGAT 120 consensus_2269#1 ------------------------------------------------------------ consensus_2269#0 TGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTT 180 consensus_2269#1 ------------------------------------------------------------ consensus_2269#0 TGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAA 240 consensus_2269#1 ------------ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAA- 47 * *************** *********************** consensus_2269#0 GGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATG 300 consensus_2269#1 -GTCNCCGTAC-----------ATGCTATAGATACAAG-TACN-CAGATAC-ATGAAATG 92 *** ** *** **************** *** ******* ******** consensus_2269#0 CATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGC 360 consensus_2269#1 CATCATGGTG-AATGGAGTAA-GACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGC 150 ********** ********** ************************************** consensus_2269#0 GCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTG 420 consensus_2269#1 GTAAGTAAATTTAAA-ATTGTAAACTG--------------------------------- 176 * ************* *********** consensus_2269#0 AAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAA 480 consensus_2269#1 ------------------------------------------------------------ consensus_2269#0 TCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG 537 consensus_2269#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||