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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2269 cluster # 2269       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2269#0 length = 537 sequences # 1  
consensus_2269#1 length = 176 sequences # 1  

consensusID : consensus_2269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence
                              [GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTGCCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGATTGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTTTGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAAGGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATGCATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTGAAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAATCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG]

[+] EMBL AL696912             [GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTGCCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGATTGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTTTGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAAGGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATGCATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTGAAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAATCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG]


>consensus_2269#0 GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTG CCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGAT TGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTT TGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAA GGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATG CATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGC GCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTG AAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAA TCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG



consensusID : consensus_2269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence
                              [ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAAGTCNCCGTACATGCTATAGATACAAGTACNCAGATACATGAAATGCATCATGGTGAATGGAGTAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGTAAGTAAATTTAAAATTGTAAACTG]

[+] EMBL BX628995             [ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAAGTCNCCGTACATGCTATAGATACAAGTACNCAGATACATGAAATGCATCATGGTGAATGGAGTAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGTAAGTAAATTTAAAATTGTAAACTG]


>consensus_2269#1 ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAAGTCNCCGTACATG CTATAGATACAAGTACNCAGATACATGAAATGCATCATGGTGAATGGAGTAAGACACGAC CCAAGCTCTTTAGTTGAACGAATCTGATGCGTAAGTAAATTTAAAATTGTAAACTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2269#0      GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTG 60
consensus_2269#1      ------------------------------------------------------------
                                                                                  

consensus_2269#0      CCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGAT 120
consensus_2269#1      ------------------------------------------------------------
                                                                                  

consensus_2269#0      TGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTT 180
consensus_2269#1      ------------------------------------------------------------
                                                                                  

consensus_2269#0      TGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAA 240
consensus_2269#1      ------------ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAA- 47
                                  *       *************** *********************** 

consensus_2269#0      GGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATG 300
consensus_2269#1      -GTCNCCGTAC-----------ATGCTATAGATACAAG-TACN-CAGATAC-ATGAAATG 92
                       *** ** ***           **************** ***  ******* ********

consensus_2269#0      CATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGC 360
consensus_2269#1      CATCATGGTG-AATGGAGTAA-GACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGC 150
                      ********** ********** **************************************

consensus_2269#0      GCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTG 420
consensus_2269#1      GTAAGTAAATTTAAA-ATTGTAAACTG--------------------------------- 176
                      * ************* ***********                                 

consensus_2269#0      AAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAA 480
consensus_2269#1      ------------------------------------------------------------
                                                                                  

consensus_2269#0      TCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG 537
consensus_2269#1      ---------------------------------------------------------
                                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)