These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CCGAAAGAATCTCCAATCTGGCATGTGTGAGTGTGTGCTGGTTTGAGGCACTTTTTACTTTGGCTTGTTCATCGACAGGAAAGTGGAAGGAAGAGATTGCAAAAAAAGCACACACACCCCAAGAGTGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTGTGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAGGGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCGATAATGTGTGGCTATGAGCATGAGGTTTTTTTTAAATACAAAATTTACTTAAAATGAGCTGAAGCAATCGGAAAGCATCAACAAAAAGTGCACCATAAAATATAGGAACGAGTCGGTTATCCGGTGTTGCGATGACGCTTAATAAGCAGGGCGAGAGAGATCTTAACAAGCGAGTGCAATAAGCAAGGGTGATTGTGTAGGAATTGGATCTTTTTGGTGGAGATCGGAAAGTAAACTGCTCAAGAAATATGATCACAGACAGGAACAGGGCAGAGGTTTCTCATTTCGATAAATTGCGGAAAAGGGCAAACAAAAAACGCCCATGTAAAGTTGTCGTCTCGTAACGAGATTTGAAGTACATTTAGTAGCG] [+] EMBL BM643945 [CCGAAAGAATCTCCAATCTGGCATGTGTGAGTGTGTGCTGGTTTGAGGCACTTTTTACTTTGGCTTGTTCATCGACAGGAAAGTGGAAGGAAGAGATTGCAAAAAAAGCACACACACCCCAAGAGTGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTGTGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAGGGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCGATAATGTGTGGCTATGAGCATGAGGTTTTTTTTAAATACAAAATTTACTTAAAATGAGCTGAAGCAATCGGAAAGCATCAACAAAAAGTGCACCATAAAATATAGGAACGAGTCGGTTATCCGGTGTTGCGATGACGCTTAATAAGCAGGGCGAGAGAGATCTTAACAAGCGAGTGCAATAAGCAAGGGTGATTGTGTAGGAATTGGATCTTTTTGGTGGAGATCGGAAAGTAAACTGCTCAAGAAATATGATCACAGACAGGAACAGGGCAGAGGTTTCTCATTTCGATAAATTGCGGAAAAGGGCAAACAAAAAACGCCCATGTAAAGTTGTCGTCTCGTAACGAGATTTGAAGTACATTTAGTAGCG] consensusID : consensus_228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [AGAAGCCATTTGTTTTTGGTGGAAGCAATTCGATCACCGGCCACGGTGACGGTAACATGATCGTGAAAACCGTTCTTTACGAGGTGCTGAAGTGTGGTGAAGCCGTTATAGCTGCCACAGCCCAGGCTCGTTGGGTTTTTTTTTCTTTGGGGTTCGATTTTTTGGTTTCCTTTTGGGCTGCTCAGCACGCATGAGGGGGGAAACGTTTAGCGTTTCGTAAAAACGGCCCCCTCCCCGCTCCAGATTGCTGCTAAAGAGTGAAAGAGATTGCAAAAAAAGCGCACACACACCCCAAGAGTGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTGTGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAGGGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCGATAATGTGTGGCTATGAGCATAAGAGGGGAGTTTTTTTTTTGAAATACAAAATTTACTTAAAAATGAGCTG] [+] EMBL BX627214 [AGAAGCCATTTGTTTTTGGTGGAAGCAATTCGATCACCGGCCACGGTGACGGTAACATGATCGTGAAAACCGTTCTTTACGAGGTGCTGAAGTGTGGTGAAGCCGTTATAGCTGCCACAGCCCAGGCTCGTTGGGTTTTTTTTTCTTTGGGGTTCGATTTTTTGGTTTCCTTTTGGGCTGCTCAGCACGCATGAGGGGGGAAACGTTTAGCGTTTCGTAAAAACGGCCCCCTCCCCGCTCCAGATTGCTGCTAAAGAGTGAAAGAGATTGCAAAAAAAGCGCACACACACCCCAAGAGTGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTGTGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAGGGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCGATAATGTGTGGCTATGAGCATAAGAGGGGAGTTTTTTTTTTGAAATACAAAATTTACTTAAAAATGAGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_228#0 ------------------------------------------------------------ consensus_228#1 AGAAGCCATTTGTTTTTGGTGGAAGCAATTCGATCACCGGCCACGGTGACGGTAACATGA 60 consensus_228#0 ------------------------------------------------------------ consensus_228#1 TCGTGAAAACCGTTCTTTACGAGGTGCTGAAGTGTGGTGAAGCCGTTATAGCTGCCACAG 120 consensus_228#0 ------------------------------------------------CCGAAAGAATCT 12 consensus_228#1 CCCAGGCTCGTTGGGTTTTTTTTTCTTTGGGGTTCGATTTTTTGGTTTCCTTTTGGGCTG 180 ** * consensus_228#0 CCAATCTGGCATGTGTGAG----TGTGTGCTGGTTTG-AGGCACTTTTTACTTTGGCTTG 67 consensus_228#1 CTCAGCACGCATGAGGGGGGAAACGTTTAGCGTTTCGTAAAAACGGCCCCCTCCCCGCTC 240 * * * ***** * * * ** * * ** * * ** ** * consensus_228#0 TTCATCGACAGGAAAGTGGAAGGAAGAGATTGCAAAAAAAGC--ACACACACCCCAAGAG 125 consensus_228#1 CAGATTGCTGCTAAA--GAGTGAAAGAGATTGCAAAAAAAGCGCACACACACCCCAAGAG 298 ** * *** * * ******************* **************** consensus_228#0 TGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTG 185 consensus_228#1 TGTTAAAACAACAGATTGCATTTGGCACGCAGGAACAGGAAATGCAAACGTGTGAAAGTG 358 ************************************************************ consensus_228#0 TGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAG 245 consensus_228#1 TGCTTAAGGCGTGTACGTTTGTGTGAGTGTGTACATGGGTGCATGGAAAACGGGGCAGAG 418 ************************************************************ consensus_228#0 GGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCG 305 consensus_228#1 GGTAAGCAAAGTGTGCAAAATCAATTTGCGATGGTCATTTTCGATATCGTAAAGCCGTCG 478 ************************************************************ consensus_228#0 ATAATGTGTGGCTATGAGCATGAGG---------TTTTTTTTAAATACAAAATTTACTTA 356 consensus_228#1 ATAATGTGTGGCTATGAGCATAAGAGGGGAGTTTTTTTTTTGAAATACAAAATTTACTTA 538 ********************* ** ******* ****************** consensus_228#0 AAA-TGAGCTGAAGCAATCGGAAAGCATCAACAAAAAGTGCACCATAAAATATAGGAACG 415 consensus_228#1 AAAATGAGCTG------------------------------------------------- 549 *** ******* consensus_228#0 AGTCGGTTATCCGGTGTTGCGATGACGCTTAATAAGCAGGGCGAGAGAGATCTTAACAAG 475 consensus_228#1 ------------------------------------------------------------ consensus_228#0 CGAGTGCAATAAGCAAGGGTGATTGTGTAGGAATTGGATCTTTTTGGTGGAGATCGGAAA 535 consensus_228#1 ------------------------------------------------------------ consensus_228#0 GTAAACTGCTCAAGAAATATGATCACAGACAGGAACAGGGCAGAGGTTTCTCATTTCGAT 595 consensus_228#1 ------------------------------------------------------------ consensus_228#0 AAATTGCGGAAAAGGGCAAACAAAAAACGCCCATGTAAAGTTGTCGTCTCGTAACGAGAT 655 consensus_228#1 ------------------------------------------------------------ consensus_228#0 TTGAAGTACATTTAGTAGCG 675 consensus_228#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||