These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [ACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTGTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGGATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTTAAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATTCTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATATACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAGGACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACATAAACGATCCCAAAAGC] [+] EMBL BX627450 [ACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTGTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGGATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTTAAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATTCTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATATACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAGGACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACATAAACGATCCCAAAAGC] consensusID : consensus_2286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTAGTGGGGCCCCCAAGGTTTAGTGGGTAGGTGGGTTGTAGAACTGTGTGNTNGTGGTAGTGGTACCTCCCTTTGGTCAATTGGGGCATTACCGGCAATTTTGGCCAAAGGCACAGGCGGCACAACAACAGGTACAGGCC] [+] EMBL AL932840 [ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTAGTGGGGCCCCCAAGGTTTAGTGGGTAGGTGGGTTGTAGAACTGTGTGNTNGTGGTAGTGGTACCTCCCTTTGGTCAATTGGGGCATTACCGGCAATTTTGGCCAAAGGCACAGGCGGCACAACAACAGGTACAGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2286#0 -------------------------------------------ACGATACACACCTTACA 17 consensus_2286#1 ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACA 60 ***************** consensus_2286#0 CTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCA 77 consensus_2286#1 CTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCA 120 ************************************************************ consensus_2286#0 ACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAG 137 consensus_2286#1 ACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAG 180 ************************************************************ consensus_2286#0 TCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTT 197 consensus_2286#1 TCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTT 240 ************************************************************ consensus_2286#0 CCCAAGAAACT-GTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGG 256 consensus_2286#1 CCCAAGAAACTAGTGGGGCCCCCAAGGTTTA---GTGGGTAGGTGGGTT----------- 286 *********** *** *** * *** ** *** ** consensus_2286#0 ATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTT 316 consensus_2286#1 GTAGAACTGTGTGNTNGTGGTAGTG-GTACCTCCCTTTGGTCAATTGGGGCATTACCGGC 345 ** * ** * * *** * * * * * * * ** * * consensus_2286#0 AAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATT 376 consensus_2286#1 AATTTTGGCCAAAGGCA-CAGGCGGCACAACAACAGGTACAGGCC--------------- 389 ** ** * * *** * * * * * ** * ** ** consensus_2286#0 CTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATAT 436 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 ACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAG 496 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 GACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACA 556 consensus_2286#1 ------------------------------------------------------------ consensus_2286#0 TAAACGATCCCAAAAGC 573 consensus_2286#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||