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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2286 cluster # 2286       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2286#0 length = 573 sequences # 1  
consensus_2286#1 length = 389 sequences # 1  

consensusID : consensus_2286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence
                              [ACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTGTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGGATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTTAAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATTCTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATATACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAGGACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACATAAACGATCCCAAAAGC]

[+] EMBL BX627450             [ACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTGTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGGATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTTAAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATTCTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATATACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAGGACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACATAAACGATCCCAAAAGC]


>consensus_2286#0 ACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAAC CAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGC TGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAG CTCGAAGAACCAATCTTCCCAAGAAACTGTGCATTTGTGTGGGTGTGAATGTGTGTGTGT GTGTCTCCTTGTATGGATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTAT TTAAAAAGTGAAACTTAAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGG AAGAAAGAGGCGGATTCTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGC TATACATATATTATATACATACACACAACACACACTCGAATATATTTAATACTTACCCTC AAAATCTGTAAGCGAGGACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAA CAAGCGAAAAGAAACATAAACGATCCCAAAAGC



consensusID : consensus_2286#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence
                              [ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTAGTGGGGCCCCCAAGGTTTAGTGGGTAGGTGGGTTGTAGAACTGTGTGNTNGTGGTAGTGGTACCTCCCTTTGGTCAATTGGGGCATTACCGGCAATTTTGGCCAAAGGCACAGGCGGCACAACAACAGGTACAGGCC]

[+] EMBL AL932840             [ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACACTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCAACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAGTCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTTCCCAAGAAACTAGTGGGGCCCCCAAGGTTTAGTGGGTAGGTGGGTTGTAGAACTGTGTGNTNGTGGTAGTGGTACCTCCCTTTGGTCAATTGGGGCATTACCGGCAATTTTGGCCAAAGGCACAGGCGGCACAACAACAGGTACAGGCC]


>consensus_2286#1 ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACA CTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCA ACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAG TCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTT CCCAAGAAACTAGTGGGGCCCCCAAGGTTTAGTGGGTAGGTGGGTTGTAGAACTGTGTGN TNGTGGTAGTGGTACCTCCCTTTGGTCAATTGGGGCATTACCGGCAATTTTGGCCAAAGG CACAGGCGGCACAACAACAGGTACAGGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2286#0      -------------------------------------------ACGATACACACCTTACA 17
consensus_2286#1      ATCGGCCCAGGTGATACATCAGAAATCAGGGGAACCGAAGCGAACGATACACACCTTACA 60
                                                                 *****************

consensus_2286#0      CTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCA 77
consensus_2286#1      CTCATTTAGCCCTAGTAGTATATTGATACGTATTATATGCAACCAGCCAGGGAGAGACCA 120
                      ************************************************************

consensus_2286#0      ACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAG 137
consensus_2286#1      ACAGCATACACACGCACACATACCCACGCAAGCAACCCACTGCTGTGACACTTACTTCAG 180
                      ************************************************************

consensus_2286#0      TCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTT 197
consensus_2286#1      TCCAAACGTAGAATGTTGAGCTCCAAAAACAGCTCGAAAGCAGCTCGAAGAACCAATCTT 240
                      ************************************************************

consensus_2286#0      CCCAAGAAACT-GTGCATTTGTGTGGGTGTGAATGTGTGTGTGTGTGTCTCCTTGTATGG 256
consensus_2286#1      CCCAAGAAACTAGTGGGGCCCCCAAGGTTTA---GTGGGTAGGTGGGTT----------- 286
                      *********** ***          *** *    *** **  *** **            

consensus_2286#0      ATACGATTGCAAGAAGGAAAAAGTAAGCAAACCTTTGTATTTATTTAAAAAGTGAAACTT 316
consensus_2286#1      GTAGAACTGTGTGNTNGTGGTAGTG-GTACCTCCCTTTGGTCAATTGGGGCATTACCGGC 345
                       **  * **   *   *    ***  * *   *  * *  * * **      * *     

consensus_2286#0      AAAAATGATCCACTGCAGTAACCCAGAGTAAAGCACGAACGGGGAAGAAAGAGGCGGATT 376
consensus_2286#1      AATTTTGGCCAAAGGCA-CAGGCGGCACAACAACAGGTACAGGCC--------------- 389
                      **   **  * *  ***  *  *   *  * * ** * ** **                 

consensus_2286#0      CTCGTGTATCGAGGAAAATTTAGTTTTTTTTATAACTCTATTGCTATACATATATTATAT 436
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      ACATACACACAACACACACTCGAATATATTTAATACTTACCCTCAAAATCTGTAAGCGAG 496
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      GACGGTCGTCCAGCAACAGGGAAGGGTGAAGTGTTCTTTGTGAACAAGCGAAAAGAAACA 556
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      TAAACGATCCCAAAAGC 573
consensus_2286#1      -----------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)