cluster # 2291

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Anopheles gambiae
cluster # 2291 cluster # 2291 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2291#0 length = 630 sequences # 1

consensus_2291#1 length = 166 sequences # 1

consensusID : consensus_2291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [TGCGTGTCGAGCCCGCACTTTCAGGTGGCCGAGCGGGCCCTGTACTACTGGAACAATGACTACATCATGTCGCTGATATCGGAAAACTCGAAGGTGATCATGCCGATCATGTTCCCCGCCCTGTACAGCAACAGCAAGTCGCACTGGAACAAAACGATCCACGGGCTGATCTACAACGCGATCAAGCTGTTCATGGAGATGAACCAGCTGCTGTTCGACGAGTGCCACCGGAAGTACCAGGCGGAGCAGGAGACGGAGCAGGAGAAGCTGGCCCAGCGGGACGCCCTGTGGCAGCAGATGGAGGATCTGGCCGCGCGGAACAGTAAGTTGACGCTGAACGACGACGAGTCGCAGCAGTCGGGCAGTGGGCGACTTTCGAGCAGCTTTAGCCACCCCCAGCAGCAACAGCAGCAGCAGCACCGACAGATGAACGGAACGTCGGGAGGTGGTGGAGTGTACGATCGGCGATCGATACAGCACAGTAGCACCTAAACGGGGGAAGGAGCGTCTAAGTCACCAAGTGGCCCCGCTCTCACATAGACACACACACACACAAACAGATAGACGGTCGGACACTATTACACTAAACAGAGCATCCTAGACTTCCATTTCCTGCGCTTCTACACACAC]

[+] EMBL BX614905             [TGCGTGTCGAGCCCGCACTTTCAGGTGGCCGAGCGGGCCCTGTACTACTGGAACAATGACTACATCATGTCGCTGATATCGGAAAACTCGAAGGTGATCATGCCGATCATGTTCCCCGCCCTGTACAGCAACAGCAAGTCGCACTGGAACAAAACGATCCACGGGCTGATCTACAACGCGATCAAGCTGTTCATGGAGATGAACCAGCTGCTGTTCGACGAGTGCCACCGGAAGTACCAGGCGGAGCAGGAGACGGAGCAGGAGAAGCTGGCCCAGCGGGACGCCCTGTGGCAGCAGATGGAGGATCTGGCCGCGCGGAACAGTAAGTTGACGCTGAACGACGACGAGTCGCAGCAGTCGGGCAGTGGGCGACTTTCGAGCAGCTTTAGCCACCCCCAGCAGCAACAGCAGCAGCAGCACCGACAGATGAACGGAACGTCGGGAGGTGGTGGAGTGTACGATCGGCGATCGATACAGCACAGTAGCACCTAAACGGGGGAAGGAGCGTCTAAGTCACCAAGTGGCCCCGCTCTCACATAGACACACACACACACAAACAGATAGACGGTCGGACACTATTACACTAAACAGAGCATCCTAGACTTCCATTTCCTGCGCTTCTACACACAC]




>consensus_2291#0
TGCGTGTCGAGCCCGCACTTTCAGGTGGCCGAGCGGGCCCTGTACTACTGGAACAATGAC
TACATCATGTCGCTGATATCGGAAAACTCGAAGGTGATCATGCCGATCATGTTCCCCGCC
CTGTACAGCAACAGCAAGTCGCACTGGAACAAAACGATCCACGGGCTGATCTACAACGCG
ATCAAGCTGTTCATGGAGATGAACCAGCTGCTGTTCGACGAGTGCCACCGGAAGTACCAG
GCGGAGCAGGAGACGGAGCAGGAGAAGCTGGCCCAGCGGGACGCCCTGTGGCAGCAGATG
GAGGATCTGGCCGCGCGGAACAGTAAGTTGACGCTGAACGACGACGAGTCGCAGCAGTCG
GGCAGTGGGCGACTTTCGAGCAGCTTTAGCCACCCCCAGCAGCAACAGCAGCAGCAGCAC
CGACAGATGAACGGAACGTCGGGAGGTGGTGGAGTGTACGATCGGCGATCGATACAGCAC
AGTAGCACCTAAACGGGGGAAGGAGCGTCTAAGTCACCAAGTGGCCCCGCTCTCACATAG
ACACACACACACACAAACAGATAGACGGTCGGACACTATTACACTAAACAGAGCATCCTA
GACTTCCATTTCCTGCGCTTCTACACACAC

consensusID : consensus_2291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence

                              [CCGCCCACGCGTCCGCAAGTGGCCCCGCTCTCACACAGACACACACACACACAAACAGATAGACGGTCGGACACTATTACACTAAACAGAGCATCCTTGACTTCCATTTCCTGCGCTTCTACACACACACACACACACACACACACACAAAACACAGGGTGATATG]

[+] EMBL BM652632             [CCGCCCACGCGTCCGCAAGTGGCCCCGCTCTCACACAGACACACACACACACAAACAGATAGACGGTCGGACACTATTACACTAAACAGAGCATCCTTGACTTCCATTTCCTGCGCTTCTACACACACACACACACACACACACACACAAAACACAGGGTGATATG]




>consensus_2291#1
CCGCCCACGCGTCCGCAAGTGGCCCCGCTCTCACACAGACACACACACACACAAACAGAT
AGACGGTCGGACACTATTACACTAAACAGAGCATCCTTGACTTCCATTTCCTGCGCTTCT
ACACACACACACACACACACACACACACAAAACACAGGGTGATATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2291#0      TGCGTGTCGAGCCCGCACTTTCAGGTGGCCGAGCGGGCCCTGTACTACTGGAACAATGAC 60
consensus_2291#1      ------------------------------------------------------------
                                                                                  

consensus_2291#0      TACATCATGTCGCTGATATCGGAAAACTCGAAGGTGATCATGCCGATCATGTTCCCCGCC 120
consensus_2291#1      ------------------------------------------------------------
                                                                                  

consensus_2291#0      CTGTACAGCAACAGCAAGTCGCACTGGAACAAAACGATCCACGGGCTGATCTACAACGCG 180
consensus_2291#1      ------------------------------------------------------------
                                                                                  

consensus_2291#0      ATCAAGCTGTTCATGGAGATGAACCAGCTGCTGTTCGACGAGTGCCACCGGAAGTACCAG 240
consensus_2291#1      ------------------------------------------------------------
                                                                                  

consensus_2291#0      GCGGAGCAGGAGACGGAGCAGGAGAAGCTGGCCCAGCGGGACGCCCTGTGGCAGCAGATG 300
consensus_2291#1      ------------------------------------------------------------
                                                                                  

consensus_2291#0      GAGGATCTGGCCGCGCGGAACAGTAAGTTGACGCTGAACGACGACGAGTCGCAGCAGTCG 360
consensus_2291#1      ------------------------------------------------------------
                                                                                  

consensus_2291#0      GGCAGTGGGCGACTTTCGAGCAGCTTTAGCCACCCCCAGCAGCAACAGCAGCAGCAGCAC 420
consensus_2291#1      ------------------------------------------------------------
                                                                                  

consensus_2291#0      CGACAGATGAACGGAACGTCGGGAGGTGGTGGAGTGTACGATCGGCGATCGATACAGCAC 480
consensus_2291#1      ------------------------------------------------------------
                                                                                  

consensus_2291#0      AGTAGCACCTAAACGGGGGAAGGAGCGTCTAAGTCACCAAGTGGCCCCGCTCTCACATAG 540
consensus_2291#1      ----------------------CCGCCCACGCGTCCGCAAGTGGCCCCGCTCTCACACAG 38
                                              **      ***  ******************** **

consensus_2291#0      ACACACACACACACAAACAGATAGACGGTCGGACACTATTACACTAAACAGAGCATCCTA 600
consensus_2291#1      ACACACACACACACAAACAGATAGACGGTCGGACACTATTACACTAAACAGAGCATCCTT 98
                      *********************************************************** 

consensus_2291#0      GACTTCCATTTCCTGCGCTTCTACACACAC------------------------------ 630
consensus_2291#1      GACTTCCATTTCCTGCGCTTCTACACACACACACACACACACACACACACAAAACACAGG 158
                      ******************************                              

consensus_2291#0      --------
consensus_2291#1      GTGATATG 166