cluster # 2297

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Anopheles gambiae
cluster # 2297 cluster # 2297 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2297#0 length = 574 sequences # 1

consensus_2297#1 length = 290 sequences # 1

consensusID : consensus_2297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [CCGGATGATTGTTCATAGTTTATTGTTTGGAAGAACATATGTTCAACCAAACAGTAACAGAAACGCTAAACCAACGGTGATCGATAGAGTTTCCAACAGATGATGATTGTTCATAGTTTATTGTTTCCGTTCCATTTGTTCTGCTGTGACAAAATAGATCCCATTTTAAAATGCGTTCTATGTTGATTAAAGGAAAAACACACACACACATAAGCATACAGAAGAGCTTTTCCGCGCAGTTAGAAACTCCTTTAAATAGTAATAGAAAACAATATGCCACACACACAGAATAGACAGAACACACACACACACACGCAGCAGAAATAACACAAAACAACACAGCAGCTAACAACAGCGCAGTTCTTGTTGATAAAATCCTATGGCTCACAGAGCAACAAAACAGGCAAACATAAAAAAAAGGCTATCAAATTTACAGGAAATTGAAAAGGTACGAAATAAACGTTTCTCAAGCAGTTTTGCTAACCCATTGATGTAGACCTTTAAATGCAAACGCTCTTCTTTTGGTTTGTTCGTTACCCTAGGATGTGATGAATGGATGCAGTCGGGAGTTTTG]

[+] EMBL BM598585             [CCGGATGATTGTTCATAGTTTATTGTTTGGAAGAACATATGTTCAACCAAACAGTAACAGAAACGCTAAACCAACGGTGATCGATAGAGTTTCCAACAGATGATGATTGTTCATAGTTTATTGTTTCCGTTCCATTTGTTCTGCTGTGACAAAATAGATCCCATTTTAAAATGCGTTCTATGTTGATTAAAGGAAAAACACACACACACATAAGCATACAGAAGAGCTTTTCCGCGCAGTTAGAAACTCCTTTAAATAGTAATAGAAAACAATATGCCACACACACAGAATAGACAGAACACACACACACACACGCAGCAGAAATAACACAAAACAACACAGCAGCTAACAACAGCGCAGTTCTTGTTGATAAAATCCTATGGCTCACAGAGCAACAAAACAGGCAAACATAAAAAAAAGGCTATCAAATTTACAGGAAATTGAAAAGGTACGAAATAAACGTTTCTCAAGCAGTTTTGCTAACCCATTGATGTAGACCTTTAAATGCAAACGCTCTTCTTTTGGTTTGTTCGTTACCCTAGGATGTGATGAATGGATGCAGTCGGGAGTTTTG]




>consensus_2297#0
CCGGATGATTGTTCATAGTTTATTGTTTGGAAGAACATATGTTCAACCAAACAGTAACAG
AAACGCTAAACCAACGGTGATCGATAGAGTTTCCAACAGATGATGATTGTTCATAGTTTA
TTGTTTCCGTTCCATTTGTTCTGCTGTGACAAAATAGATCCCATTTTAAAATGCGTTCTA
TGTTGATTAAAGGAAAAACACACACACACATAAGCATACAGAAGAGCTTTTCCGCGCAGT
TAGAAACTCCTTTAAATAGTAATAGAAAACAATATGCCACACACACAGAATAGACAGAAC
ACACACACACACACGCAGCAGAAATAACACAAAACAACACAGCAGCTAACAACAGCGCAG
TTCTTGTTGATAAAATCCTATGGCTCACAGAGCAACAAAACAGGCAAACATAAAAAAAAG
GCTATCAAATTTACAGGAAATTGAAAAGGTACGAAATAAACGTTTCTCAAGCAGTTTTGC
TAACCCATTGATGTAGACCTTTAAATGCAAACGCTCTTCTTTTGGTTTGTTCGTTACCCT
AGGATGTGATGAATGGATGCAGTCGGGAGTTTTG

consensusID : consensus_2297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [TGCAGTGAATTGTCTCTTTAAAAGCGAACGAAATCTTAAAAGGAAGAACATATGTTCAACCAAACAGTAACAGAAACGCTAAACCAACGGTGATCGATAGAGTTTCCAACAGATGATGATTGTTCATAGTTTATTGTTTCCGTTCCATTTGTTCTGCTGTGACAAAATAGATCCCATTTTAAAATGCGTTCTATGTTGATTAAAGGAAAAACACACACACACATAAGCATACAGAAGAGCTTTTCCGCGCAGTTAGAAACTCCTTTAAATAGTAATAGAAAACAATATGC]

[+] EMBL BX613890             [TGCAGTGAATTGTCTCTTTAAAAGCGAACGAAATCTTAAAAGGAAGAACATATGTTCAACCAAACAGTAACAGAAACGCTAAACCAACGGTGATCGATAGAGTTTCCAACAGATGATGATTGTTCATAGTTTATTGTTTCCGTTCCATTTGTTCTGCTGTGACAAAATAGATCCCATTTTAAAATGCGTTCTATGTTGATTAAAGGAAAAACACACACACACATAAGCATACAGAAGAGCTTTTCCGCGCAGTTAGAAACTCCTTTAAATAGTAATAGAAAACAATATGC]




>consensus_2297#1
TGCAGTGAATTGTCTCTTTAAAAGCGAACGAAATCTTAAAAGGAAGAACATATGTTCAAC
CAAACAGTAACAGAAACGCTAAACCAACGGTGATCGATAGAGTTTCCAACAGATGATGAT
TGTTCATAGTTTATTGTTTCCGTTCCATTTGTTCTGCTGTGACAAAATAGATCCCATTTT
AAAATGCGTTCTATGTTGATTAAAGGAAAAACACACACACACATAAGCATACAGAAGAGC
TTTTCCGCGCAGTTAGAAACTCCTTTAAATAGTAATAGAAAACAATATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2297#0      -------------CCGGATGATTGTTCATAGTTTATTGTTTGGAAGAACATATGTTCAAC 47
consensus_2297#1      TGCAGTGAATTGTCTCTTTAAAAGCGAACGAAATCTTAAAAGGAAGAACATATGTTCAAC 60
                                   *    * *  *   *     * **    *******************

consensus_2297#0      CAAACAGTAACAGAAACGCTAAACCAACGGTGATCGATAGAGTTTCCAACAGATGATGAT 107
consensus_2297#1      CAAACAGTAACAGAAACGCTAAACCAACGGTGATCGATAGAGTTTCCAACAGATGATGAT 120
                      ************************************************************

consensus_2297#0      TGTTCATAGTTTATTGTTTCCGTTCCATTTGTTCTGCTGTGACAAAATAGATCCCATTTT 167
consensus_2297#1      TGTTCATAGTTTATTGTTTCCGTTCCATTTGTTCTGCTGTGACAAAATAGATCCCATTTT 180
                      ************************************************************

consensus_2297#0      AAAATGCGTTCTATGTTGATTAAAGGAAAAACACACACACACATAAGCATACAGAAGAGC 227
consensus_2297#1      AAAATGCGTTCTATGTTGATTAAAGGAAAAACACACACACACATAAGCATACAGAAGAGC 240
                      ************************************************************

consensus_2297#0      TTTTCCGCGCAGTTAGAAACTCCTTTAAATAGTAATAGAAAACAATATGCCACACACACA 287
consensus_2297#1      TTTTCCGCGCAGTTAGAAACTCCTTTAAATAGTAATAGAAAACAATATGC---------- 290
                      **************************************************          

consensus_2297#0      GAATAGACAGAACACACACACACACACGCAGCAGAAATAACACAAAACAACACAGCAGCT 347
consensus_2297#1      ------------------------------------------------------------
                                                                                  

consensus_2297#0      AACAACAGCGCAGTTCTTGTTGATAAAATCCTATGGCTCACAGAGCAACAAAACAGGCAA 407
consensus_2297#1      ------------------------------------------------------------
                                                                                  

consensus_2297#0      ACATAAAAAAAAGGCTATCAAATTTACAGGAAATTGAAAAGGTACGAAATAAACGTTTCT 467
consensus_2297#1      ------------------------------------------------------------
                                                                                  

consensus_2297#0      CAAGCAGTTTTGCTAACCCATTGATGTAGACCTTTAAATGCAAACGCTCTTCTTTTGGTT 527
consensus_2297#1      ------------------------------------------------------------
                                                                                  

consensus_2297#0      TGTTCGTTACCCTAGGATGTGATGAATGGATGCAGTCGGGAGTTTTG 574
consensus_2297#1      -----------------------------------------------