These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_23#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATCCGCCCCTTCCGGTCAAGATGGCGCTTGAGTCAGTGTGTCTGCTGCTCGGGGAGGACGATCGGGGCGGCGATTGGAAAGCGATACGCGCGATCATGGTGAAGGATAGCTTCATCGCGTCGATCGTCAAGCTGGACACATCGCACATTACCGATGAGGTGCGTGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCTGATCGCGCAGCTCGAGCAGAGCATCGCCGCGTACAAGGAGGAGTACGCGCAGCTGATCTCGCAGGCGCAGGCGATCAAGACCGATCTCGAGAACGTGCAGGCGAAGGTGGACCGGTCGATCGCGCTGCTCAAGAGCTTGGTGATCGAGCGGGAGCGCTGGGAGGCGACGAGCGAAACGTTCCGCTCGCAGATGTCCACCATCGTGGGCGACGTGCTGCTGTCGGCCGCC] [+] EMBL BM586993 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATCCGCCCCTTCCGGTCAAGATGGCGCTTGAGTCAGTGTGTCTGCTGCTCGGGGAGGACGATCGGGGCGGCGATTGGAAAGCGATACGCGCGATCATGGTGAAGGATAGCTTCATCGCGTCGATCGTCAAGCTGGACACATCGCACATTACCGATGAGGTGCGTGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCTGATCGCGCAGCTCGAGCAGAGCATCGCCGCGTACAAGGAGGAGTACGCGCAGCTGATCTCGCAGGCGCAGGCGATCAAGACCGATCTCGAGAACGTGCAGGCGAAGGTGGACCGGTCGATCGCGCTGCTCAAGAGCTTGGTGATCGAGCGGGAGCGCTGGGAGGCGACGAGCGAAACGTTCCGCTCGCAGATGTCCACCATCGTGGGCGACGTGCTGCTGTCGGCCGCC] consensusID : consensus_23#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [CCGAAATTGTTCGTGTGTGCCTCAATTTATTGGTTTCATTTCTGGTCTGCGATCATAACACGCGCACGTAACACAATGCTTCTCAAAGTTTGCCTACCTGCCTCACCTTGCATGCCATACAATTGCTTGTACCACGCTTTCCGTTGCGCTTTCCGGCCCCTGTCCGAAACAGTACGCTAATATGATTTTTTCCTTTCCTCTTCTCCGACTTCCCGGCGAGCACAGCGATGAGGTGCGCGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCT] [+] EMBL BM599261 [CCGAAATTGTTCGTGTGTGCCTCAATTTATTGGTTTCATTTCTGGTCTGCGATCATAACACGCGCACGTAACACAATGCTTCTCAAAGTTTGCCTACCTGCCTCACCTTGCATGCCATACAATTGCTTGTACCACGCTTTCCGTTGCGCTTTCCGGCCCCTGTCCGAAACAGTACGCTAATATGATTTTTTCCTTTCCTCTTCTCCGACTTCCCGGCGAGCACAGCGATGAGGTGCGCGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCGTGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGACATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGACACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_23#0 ----------CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCC-------CA 43 consensus_23#1 CCGAAATTGTTCGTGTGTGCCTCAATTTATTGGTTTCATTTCTGGTCTGCGATCATAACA 60 ** ** ** * ** * *** ** ** consensus_23#0 CGCGTCCGGGCGAATCCGCCCCTTCCGGTCAAGATGGC-GCTTGAGTCAGTGTGTC-TGC 101 consensus_23#1 CGCGCACGTAACACAATGCTTCTCAAAGTTTGCCTACCTGCCTCACCTTGCATGCCATAC 120 **** ** * ** ** ** * * ** * * * ** * * * consensus_23#0 TGCT-CGGGGAGGACGATCGGGGCGGCGATTGGAAAGCGATACGCGCGATCATGGTGAAG 160 consensus_23#1 AATTGCTTGTACCACGCTTTCCGTTGCGCTTTCCGGCCCCTGTCCGAAACAGTACGCTAA 180 * * * * *** * * *** ** * * ** * * * consensus_23#0 GATAGCTTCATCGCGTCGA-TCGTCAAGCTGGACACATCGCACATTACCGATGAGGTGCG 219 consensus_23#1 TATGATTTTTTCCTTTCCTCTTCTCCGACT--TCCCGGCGAGCAC-AGCGATGAGGTGCG 237 ** ** ** ** * ** ** * * ** ** * ************ consensus_23#0 TGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCG 279 consensus_23#1 CGAAAAGATGAAATCGAAGTACCTGAGCAATCCGGACTACAACTTCGAGAAGGTGAACCG 297 *********************************************************** consensus_23#0 TGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGA 339 consensus_23#1 TGCCTCGATGGCGTGCGGTCCCATGGTGAAGTGGGCGATCGCGCAGGTCGAGTACGCGGA 357 ************************************************************ consensus_23#0 CATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGA 399 consensus_23#1 CATGCTCAAGCGCGTGGAGCCGCTGCGCGAAGAGCTGAGCTCGCTGGAGCGCCAGGCGGA 417 ************************************************************ consensus_23#0 CACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCTGATCGCGCAGCTCGAGCAGAGCAT 459 consensus_23#1 CACGAACATCAAGCACGGCAGGGAGGTGAAGGAGCT------------------------ 453 ************************************ consensus_23#0 CGCCGCGTACAAGGAGGAGTACGCGCAGCTGATCTCGCAGGCGCAGGCGATCAAGACCGA 519 consensus_23#1 ------------------------------------------------------------ consensus_23#0 TCTCGAGAACGTGCAGGCGAAGGTGGACCGGTCGATCGCGCTGCTCAAGAGCTTGGTGAT 579 consensus_23#1 ------------------------------------------------------------ consensus_23#0 CGAGCGGGAGCGCTGGGAGGCGACGAGCGAAACGTTCCGCTCGCAGATGTCCACCATCGT 639 consensus_23#1 ------------------------------------------------------------ consensus_23#0 GGGCGACGTGCTGCTGTCGGCCGCC 664 consensus_23#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||