cluster # 2303

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Anopheles gambiae
cluster # 2303 cluster # 2303 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2303#0 length = 627 sequences # 1

consensus_2303#1 length = 518 sequences # 1

consensusID : consensus_2303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [CAGAATCGGCCGAGGTTNACGGTGGAAGAGTACGGGCGAAGGTGTCCCGGAGTCTACTGCCCTGGAGTACGGTGGTAACGGTGCCACCCTGAAGGTGCTGAACGAACGATTTAGAGAGTTTCTTCGGTCGAAGCGCACTACGCTGCTGGAGCTTGACGAGATGGAGATCGATCTGAAGGATCCACGGGAAGCGGCGTCCACGAGGATGTGGGCGAGGTGGTGGCCGATGGTGCTGTTGGGAGCTTCCGAAAGCTCTCGATCGATTGAACCATCCCCTGGCGGATCTTCTTCCACACCTCAATGTGATAAGCTGCTACTGCTGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGGCACTCGAAGGCAAAAACAAATCAAATCTCGCAGCCAAGAAGCGTGAAGGAGACCATGTTTGTTCTAGGTATATCTCACACCTACACTGTTATATGGGGTTATCANCATGGGTTTGGCACGATCGAATTATCTGTTTTAAGTCACGGTCCGGCAAATGACGTAGCATTTGGCAAATGTTAAATGACAAAGTGACGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAAAAAAAGCAACACTCATCCTTTCTAAAA]

[+] EMBL AL697141             [CAGAATCGGCCGAGGTTNACGGTGGAAGAGTACGGGCGAAGGTGTCCCGGAGTCTACTGCCCTGGAGTACGGTGGTAACGGTGCCACCCTGAAGGTGCTGAACGAACGATTTAGAGAGTTTCTTCGGTCGAAGCGCACTACGCTGCTGGAGCTTGACGAGATGGAGATCGATCTGAAGGATCCACGGGAAGCGGCGTCCACGAGGATGTGGGCGAGGTGGTGGCCGATGGTGCTGTTGGGAGCTTCCGAAAGCTCTCGATCGATTGAACCATCCCCTGGCGGATCTTCTTCCACACCTCAATGTGATAAGCTGCTACTGCTGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGGCACTCGAAGGCAAAAACAAATCAAATCTCGCAGCCAAGAAGCGTGAAGGAGACCATGTTTGTTCTAGGTATATCTCACACCTACACTGTTATATGGGGTTATCANCATGGGTTTGGCACGATCGAATTATCTGTTTTAAGTCACGGTCCGGCAAATGACGTAGCATTTGGCAAATGTTAAATGACAAAGTGACGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAAAAAAAGCAACACTCATCCTTTCTAAAA]




>consensus_2303#0
CAGAATCGGCCGAGGTTNACGGTGGAAGAGTACGGGCGAAGGTGTCCCGGAGTCTACTGC
CCTGGAGTACGGTGGTAACGGTGCCACCCTGAAGGTGCTGAACGAACGATTTAGAGAGTT
TCTTCGGTCGAAGCGCACTACGCTGCTGGAGCTTGACGAGATGGAGATCGATCTGAAGGA
TCCACGGGAAGCGGCGTCCACGAGGATGTGGGCGAGGTGGTGGCCGATGGTGCTGTTGGG
AGCTTCCGAAAGCTCTCGATCGATTGAACCATCCCCTGGCGGATCTTCTTCCACACCTCA
ATGTGATAAGCTGCTACTGCTGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGGCAC
TCGAAGGCAAAAACAAATCAAATCTCGCAGCCAAGAAGCGTGAAGGAGACCATGTTTGTT
CTAGGTATATCTCACACCTACACTGTTATATGGGGTTATCANCATGGGTTTGGCACGATC
GAATTATCTGTTTTAAGTCACGGTCCGGCAAATGACGTAGCATTTGGCAAATGTTAAATG
ACAAAGTGACGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAA
AAAAAGCAACACTCATCCTTTCTAAAA

consensusID : consensus_2303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [TGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGCACTCGAAGGCAAAAACAAATCAATCTCGCAGCCAAGAAGCGTGAAGGAGACATGTTTGTTTAGTTTTTTTTTTGTTTTGGTTTTTGGTTTGCAGTCGAATTTTTGTTTAGTCACGGTCCGCCAAATGACGTAGCATTTGGCAAATGTTAAATGACAAAGTGAGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAAAAAAAAGCAACCACTCATCCTTTCTAAAATTCTATTAAAACTGTGTTTCATCAACATCGATCACAACACTTTAGAATGGGTCGATGGCAAAAAAAACGAGTTCTTGCAAGCGCAGTTATAAGTGATTGTTTTTCCTCGATTCTGGGGTGTATGTGTGCGATTCTGGTTTTTTGTAACGGTGACGTCAAAGGGAGCTAAATTCATTTCAAACAGCATAAGATTCAGTATTACGTTTAAGCAGGGTTTTGGAATGGGTCCAGAATAAAATG]

[+] EMBL BX612815             [TGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGCACTCGAAGGCAAAAACAAATCAATCTCGCAGCCAAGAAGCGTGAAGGAGACATGTTTGTTTAGTTTTTTTTTTGTTTTGGTTTTTGGTTTGCAGTCGAATTTTTGTTTAGTCACGGTCCGCCAAATGACGTAGCATTTGGCAAATGTTAAATGACAAAGTGAGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAAAAAAAAGCAACCACTCATCCTTTCTAAAATTCTATTAAAACTGTGTTTCATCAACATCGATCACAACACTTTAGAATGGGTCGATGGCAAAAAAAACGAGTTCTTGCAAGCGCAGTTATAAGTGATTGTTTTTCCTCGATTCTGGGGTGTATGTGTGCGATTCTGGTTTTTTGTAACGGTGACGTCAAAGGGAGCTAAATTCATTTCAAACAGCATAAGATTCAGTATTACGTTTAAGCAGGGTTTTGGAATGGGTCCAGAATAAAATG]




>consensus_2303#1
TGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGCACTCGAAGGCAAAAACAAATCAA
TCTCGCAGCCAAGAAGCGTGAAGGAGACATGTTTGTTTAGTTTTTTTTTTGTTTTGGTTT
TTGGTTTGCAGTCGAATTTTTGTTTAGTCACGGTCCGCCAAATGACGTAGCATTTGGCAA
ATGTTAAATGACAAAGTGAGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCG
CTTGTACAAAAAAAAGCAACCACTCATCCTTTCTAAAATTCTATTAAAACTGTGTTTCAT
CAACATCGATCACAACACTTTAGAATGGGTCGATGGCAAAAAAAACGAGTTCTTGCAAGC
GCAGTTATAAGTGATTGTTTTTCCTCGATTCTGGGGTGTATGTGTGCGATTCTGGTTTTT
TGTAACGGTGACGTCAAAGGGAGCTAAATTCATTTCAAACAGCATAAGATTCAGTATTAC
GTTTAAGCAGGGTTTTGGAATGGGTCCAGAATAAAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2303#0      CAGAATCGGCCGAGGTTNAC--GGTGGAAGAGTACGGGCGAAGGTGTCCCGGAGTCTACT 58
consensus_2303#1      --------TGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGCA-CTCGAAGGCAAAA 51
                                * *****  *        * **   **   ****   * ** ** * *  

consensus_2303#0      GCCCTGGAGTACGGTGGTAACGGTGCCACCCTGAAGGTGCTGAACGAACGATTTAGAGAG 118
consensus_2303#1      ACAAATCAATCTCGCAGCCAAGAAG----CGTGAAGGAGACATGT---TTGTTTAGTTTT 104
                       *     * *   *  *  * *  *    * ****** *            *****    

consensus_2303#0      TTTCTTCGGTCGAAGCGCACTACGCTGCTGGAGCTTGACGAGATGGAGATCGATCTGAAG 178
consensus_2303#1      TTTTTTGTTTTGGTTTTTGGTTTGCAGTCGAATTTTTGTTTAGTCACGGTCCGCCAAATG 164
                      *** **   * *        *  ** *  * *  **       *   * **   *  * *

consensus_2303#0      GATCCACGGGAAGCGGCGTCCACGAGGATGTGGGCGAGGTGGTGGCCGATGGTGCTGTTG 238
consensus_2303#1      ACGTAGCATTTGGCAAATGTTAAATGACAAAGTGAGAAACGGTTTCGTACGGACGGTGTA 224
                            *     **       *   *     * * **   ***  *  * **      * 

consensus_2303#0      GGAGCTTCCGAAAGCTCTCG-ATCGATTGAACCATCCCCTGGCGGATCTTCTTCCACACC 297
consensus_2303#1      TCTATATGCGAGCGCGCTTGTACAAAAAAAAGCAACCACTC----ATCCTTTCTAAAATT 280
                            * ***  ** ** * *   *   ** ** ** **     *** * *   * *  

consensus_2303#0      TCAATGTGATAAGCTGCTACTGCTGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGG 357
consensus_2303#1      CTATTA----AAACTG----TGTTTCATCAACATCG-ATCACAACACTTTAGAATGGG-- 329
                        * *     ** ***    ** * **     ***  *** * * *  ** * **  *  

consensus_2303#0      CACTCGAAGGCAAAAACAAATCAAATCTCGCAGCCAAGAAGCGTGAAGGAGACCATGTTT 417
consensus_2303#1      ---TCGATGGCAAAAA-AAACGAGTTCTTGCAAGC--GCAGT-TATAAGTGATTGTTTTT 382
                         **** ******** ***  *  *** ***  *  * **  *  * * **   * ***

consensus_2303#0      GTTCTAGGTATATCTCACACCTACACTGTTATATGGGGTTATCANCATGGGTTTGGCACG 477
consensus_2303#1      CCTC-GATTCTGGGGTGTATGTGTGCGATTCTGGTTTTTTGTAACGGTGACGTCAAAGGG 441
                        **    * *       *  *   *  ** *      ** * *   **   *      *

consensus_2303#0      ATCGAATTATCTGTTTTAAGTCACGGTCCGGCAAATGACGTAGCATTTGGCAAATGTTAA 537
consensus_2303#1      AGCTAA--ATTCATTTCAAA--------CAGCATAAGATTCAGTATT------ACGTTTA 485
                      * * **  **   *** **         * *** * **   ** ***      * *** *

consensus_2303#0      ATGACAAAGTGACGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTA 597
consensus_2303#1      A--GCAGGGTTTTGGAATGGGTCCAGA-ATAAAATG------------------------ 518
                      *   **  **   * ** ** * *  *   *   **                        

consensus_2303#0      CAAAAAAAGCAACACTCATCCTTTCTAAAA 627
consensus_2303#1      ------------------------------