cluster # 2307

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Anopheles gambiae
cluster # 2307 cluster # 2307 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2307#0 length = 623 sequences # 1

consensus_2307#1 length = 517 sequences # 1

consensusID : consensus_2307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [GCAGAATCCGCACGATGTAAAACGATACACACACGCACACAAAACGTATGTGCCCCCTTCCCTTCGATATAAACTATGCAACAACAACAAAAAAACTCCGAAAACAAATACCCAAAAAAATGGTAAAAACCAACGTCGGGACGATCCTGCGCCTACGATCAACGTTCAAACAACACACACACACACACCTAAAGGACCCGACCCTGGAGTGTGACAAGAAGTGTGCGAACAAGGGCGTCTGCAACGAGGACAAGATCTGCCAGTGTCCGGAGGGCTACATGGGCCAGTACTGCCAGACGGCGCTCTGCTACCCGCAGTGCATGAACTGGCGGCAACTGTACCGCACCGGGCACCTGCTCCTGTCCGCCCGGCTACCAGGGTCCTGGCACTGCGAGGGAGGCATCTGTGCCGAAAAGTGTCAGAACGGGGGCAAATGCATCCAGAAGGACAAGTGCGAATGCACCAAGGGCTACTACGGGCTGCGCTGCGAGTACTCGAAGTGCGTCATACCGTGCCTGCACGATGGCAAGTGCCGGGGAGTGAACAAGTGCCGGTGCAAAGCCGGGCCTGAGCGGTGACCACTGCCAGATCGGGCGCCGGCAGCGCTCGAACTGGCAAGCGAC]

[+] EMBL BX466159             [GCAGAATCCGCACGATGTAAAACGATACACACACGCACACAAAACGTATGTGCCCCCTTCCCTTCGATATAAACTATGCAACAACAACAAAAAAACTCCGAAAACAAATACCCAAAAAAATGGTAAAAACCAACGTCGGGACGATCCTGCGCCTACGATCAACGTTCAAACAACACACACACACACACCTAAAGGACCCGACCCTGGAGTGTGACAAGAAGTGTGCGAACAAGGGCGTCTGCAACGAGGACAAGATCTGCCAGTGTCCGGAGGGCTACATGGGCCAGTACTGCCAGACGGCGCTCTGCTACCCGCAGTGCATGAACTGGCGGCAACTGTACCGCACCGGGCACCTGCTCCTGTCCGCCCGGCTACCAGGGTCCTGGCACTGCGAGGGAGGCATCTGTGCCGAAAAGTGTCAGAACGGGGGCAAATGCATCCAGAAGGACAAGTGCGAATGCACCAAGGGCTACTACGGGCTGCGCTGCGAGTACTCGAAGTGCGTCATACCGTGCCTGCACGATGGCAAGTGCCGGGGAGTGAACAAGTGCCGGTGCAAAGCCGGGCCTGAGCGGTGACCACTGCCAGATCGGGCGCCGGCAGCGCTCGAACTGGCAAGCGAC]




>consensus_2307#0
GCAGAATCCGCACGATGTAAAACGATACACACACGCACACAAAACGTATGTGCCCCCTTC
CCTTCGATATAAACTATGCAACAACAACAAAAAAACTCCGAAAACAAATACCCAAAAAAA
TGGTAAAAACCAACGTCGGGACGATCCTGCGCCTACGATCAACGTTCAAACAACACACAC
ACACACACCTAAAGGACCCGACCCTGGAGTGTGACAAGAAGTGTGCGAACAAGGGCGTCT
GCAACGAGGACAAGATCTGCCAGTGTCCGGAGGGCTACATGGGCCAGTACTGCCAGACGG
CGCTCTGCTACCCGCAGTGCATGAACTGGCGGCAACTGTACCGCACCGGGCACCTGCTCC
TGTCCGCCCGGCTACCAGGGTCCTGGCACTGCGAGGGAGGCATCTGTGCCGAAAAGTGTC
AGAACGGGGGCAAATGCATCCAGAAGGACAAGTGCGAATGCACCAAGGGCTACTACGGGC
TGCGCTGCGAGTACTCGAAGTGCGTCATACCGTGCCTGCACGATGGCAAGTGCCGGGGAG
TGAACAAGTGCCGGTGCAAAGCCGGGCCTGAGCGGTGACCACTGCCAGATCGGGCGCCGG
CAGCGCTCGAACTGGCAAGCGAC

consensusID : consensus_2307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [CCGGAAAGATCTTCTACTCTAACATCTTCTTCGCAAGGACCCGACCCGGAGTGTGACAAGAAGTGTGCGAACAAGGGCGTCTGCAACGAGGACAAGATCTGCCAGTGTCCGGAGGGCTACATGGGCCAGTACTGCCAGACGGCGCTCTGCTACCCGCAGTGCATGAACGGCGGCAACTGTACCGCACCGGGCACCTGCTCCTGTCCGCCCGGCTACCAGGGCCGGCACTGCGAGGGAGGTAATGTACCCAAACTGGCACACACACTCTCTCTCTCTCTCTCTCTCTCTCTGGACGCATCCGTCACAAACCTACCCATTTCCCAAACCCTCTTTCTTCGTCAGGCATCTGTGCCGAAAAGTGTCAGAACGGGGGCAAATGCATCCAGAAGGACAAGTGCGAATGCACCAAGGGCTACTACGGGCTGCGCTGCGAGTACTCGAAGTGCGTCATACCGTGCCTGCACGATGGCAAGTGCCGGGGAGTGAACAAGTGCCGGGTGCAAGCCGGGCCTGAGCG]

[+] EMBL BM652671             [CCGGAAAGATCTTCTACTCTAACATCTTCTTCGCAAGGACCCGACCCGGAGTGTGACAAGAAGTGTGCGAACAAGGGCGTCTGCAACGAGGACAAGATCTGCCAGTGTCCGGAGGGCTACATGGGCCAGTACTGCCAGACGGCGCTCTGCTACCCGCAGTGCATGAACGGCGGCAACTGTACCGCACCGGGCACCTGCTCCTGTCCGCCCGGCTACCAGGGCCGGCACTGCGAGGGAGGTAATGTACCCAAACTGGCACACACACTCTCTCTCTCTCTCTCTCTCTCTCTGGACGCATCCGTCACAAACCTACCCATTTCCCAAACCCTCTTTCTTCGTCAGGCATCTGTGCCGAAAAGTGTCAGAACGGGGGCAAATGCATCCAGAAGGACAAGTGCGAATGCACCAAGGGCTACTACGGGCTGCGCTGCGAGTACTCGAAGTGCGTCATACCGTGCCTGCACGATGGCAAGTGCCGGGGAGTGAACAAGTGCCGGGTGCAAGCCGGGCCTGAGCG]




>consensus_2307#1
CCGGAAAGATCTTCTACTCTAACATCTTCTTCGCAAGGACCCGACCCGGAGTGTGACAAG
AAGTGTGCGAACAAGGGCGTCTGCAACGAGGACAAGATCTGCCAGTGTCCGGAGGGCTAC
ATGGGCCAGTACTGCCAGACGGCGCTCTGCTACCCGCAGTGCATGAACGGCGGCAACTGT
ACCGCACCGGGCACCTGCTCCTGTCCGCCCGGCTACCAGGGCCGGCACTGCGAGGGAGGT
AATGTACCCAAACTGGCACACACACTCTCTCTCTCTCTCTCTCTCTCTCTGGACGCATCC
GTCACAAACCTACCCATTTCCCAAACCCTCTTTCTTCGTCAGGCATCTGTGCCGAAAAGT
GTCAGAACGGGGGCAAATGCATCCAGAAGGACAAGTGCGAATGCACCAAGGGCTACTACG
GGCTGCGCTGCGAGTACTCGAAGTGCGTCATACCGTGCCTGCACGATGGCAAGTGCCGGG
GAGTGAACAAGTGCCGGGTGCAAGCCGGGCCTGAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2307#0      GCAGAATCCGCACGATGTAAAACGATACACACACGCACACAAAACGTATGTGCCCCCTTC 60
consensus_2307#1      -------------------------------------------CCGGAAAGATCTTCTAC 17
                                                                  ** *     *  ** *

consensus_2307#0      CCTTCGATATAAACTATGCAACAACAACAAAAAAACTCCGAAAACAAATACCCAAAAAAA 120
consensus_2307#1      TCT--AACATCTTCTTCGCAAGGACCCGACCCGGAGTGTGACAAGAAGTGTGCGAACAA- 74
                       **   * **   **  ****  **   *     * *  ** ** ** *   * ** ** 

consensus_2307#0      TGGTAAAAACCAACGTCGGGACGATCCTGCGCCTACGATCAACGTTCAAACAACACACAC 180
consensus_2307#1      -GGGCGTCTGCAACGAGGACAAGATCT----------GCCAGTGTCCGGAGGGC-----T 118
                       **       *****  *  * ****             **  ** *  *   *      

consensus_2307#0      ACACACACCTAAAGGACCCGACCCTGGAGTGTGACAAGAAGTGTGCGAACAAGGGCGTCT 240
consensus_2307#1      ACATGGGCCAGTACTGCCAGACGGCGCTCTGCTACCCGCAGTGCATGAACGGCGGCAACT 178
                      ***    **   *   ** ***   *   **  **  * ****   ****   ***  **

consensus_2307#0      GCAACGAGGACAAGATCTGCCAGTGTCCGGAGGGCTACATGGGCCAGTACTGCCAGAC-G 299
consensus_2307#1      GTACCGCACCGGGCACCTGCTCCTGTCCGCCCGGCTACCAGGGCCGGCACTGCGAGGGAG 238
                      * * **        * ****   ******   ******  ***** * ***** **   *

consensus_2307#0      GCGCTCTGCT---ACCCGCA-GTGCATGAACTGGCGGCAACTGTACCGCACCGG--GCAC 353
consensus_2307#1      GTAATGTACCCAAACTGGCACACACACTCTCTCTCTCTCTCTCTCTCTCTCTGGACGCAT 298
                      *   * * *    **  ***    **    **  *     ** *  * * * **  *** 

consensus_2307#0      CTGCTCCTGTCCGCCCGGCTACCAGGGTCCTGGCACTGCGAGGGAGGCATCTGTGCCGAA 413
consensus_2307#1      CCGTCACAAACCTACCCATTTCCCAAACCCTCTTTCTTCGTC--AGGCATCTGTGCCGAA 356
                      * *   *   **  **   * **     ***    ** **    ****************

consensus_2307#0      AAGTGTCAGAACGGGGGCAAATGCATCCAGAAGGACAAGTGCGAATGCACCAAGGGCTAC 473
consensus_2307#1      AAGTGTCAGAACGGGGGCAAATGCATCCAGAAGGACAAGTGCGAATGCACCAAGGGCTAC 416
                      ************************************************************

consensus_2307#0      TACGGGCTGCGCTGCGAGTACTCGAAGTGCGTCATACCGTGCCTGCACGATGGCAAGTGC 533
consensus_2307#1      TACGGGCTGCGCTGCGAGTACTCGAAGTGCGTCATACCGTGCCTGCACGATGGCAAGTGC 476
                      ************************************************************

consensus_2307#0      CGGGGAGTGAACAAGTGCCGGTGCAAAGCCGGGCCTGAGCGGTGACCACTGCCAGATCGG 593
consensus_2307#1      CGGGGAGTGAACAAGTGCCGGGTGCAAGCCGGGCCTGAGCG------------------- 517
                      *********************    ****************                   

consensus_2307#0      GCGCCGGCAGCGCTCGAACTGGCAAGCGAC 623
consensus_2307#1      ------------------------------