cluster # 2328

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Anopheles gambiae
cluster # 2328 cluster # 2328 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2328#0 length = 601 sequences # 1

consensus_2328#1 length = 597 sequences # 1

consensusID : consensus_2328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [CCGCCCACGCGTCCGGCGCGCACCGCGGTGGTGACGGACCGGTTTCACGGGGACGGCGTTAGAATTGGTTCCGCGACACTTCGTTTTTTTTCCTTTCTTTCTTTGTTTCGTTCTGGTTCTATTAGTTGCTCAGTTCCGCGTCTTCTAGTGCCCATTGTTCGTACGTTGTGTATTTTTCTAGCGTGTGTGCGTGTGTGTGTGTTCTAGCGGCGTAGTCGCGGTGTATTTGCGCTATATTAGTTATCGCGCGACGTGCCCCTTTTTTTTGCTGCTACTGCCGTTGTCCGTGAGTGGATAAATAGAGCTGCGGGGAGGGCTTGCAAAAATATATATCAAATGGTGTGATATATGCGCGAGAGGACGGGGCTTGTGTGGTCAAGAGGACAAGTACAGACGACGGCGACAATTTCTTTTGCTAACCAACCCCCAGCAGCGCAATCAGCATCCCAGGGAGAAGGAGGGGTGGTTTTGTTGCCGCATTTGTGCCGCTGCCTATTGACGCGTCCGAGTTGCTAATTTGCATGCTGCCGCCGCCTGTGCTACCCCTCCGTGCTACCAGCAGACGCGAAACGGAAGTTTGATCACCCAAAGCACGCATCAG]

[+] EMBL BM597990             [CCGCCCACGCGTCCGGCGCGCACCGCGGTGGTGACGGACCGGTTTCACGGGGACGGCGTTAGAATTGGTTCCGCGACACTTCGTTTTTTTTCCTTTCTTTCTTTGTTTCGTTCTGGTTCTATTAGTTGCTCAGTTCCGCGTCTTCTAGTGCCCATTGTTCGTACGTTGTGTATTTTTCTAGCGTGTGTGCGTGTGTGTGTGTTCTAGCGGCGTAGTCGCGGTGTATTTGCGCTATATTAGTTATCGCGCGACGTGCCCCTTTTTTTTGCTGCTACTGCCGTTGTCCGTGAGTGGATAAATAGAGCTGCGGGGAGGGCTTGCAAAAATATATATCAAATGGTGTGATATATGCGCGAGAGGACGGGGCTTGTGTGGTCAAGAGGACAAGTACAGACGACGGCGACAATTTCTTTTGCTAACCAACCCCCAGCAGCGCAATCAGCATCCCAGGGAGAAGGAGGGGTGGTTTTGTTGCCGCATTTGTGCCGCTGCCTATTGACGCGTCCGAGTTGCTAATTTGCATGCTGCCGCCGCCTGTGCTACCCCTCCGTGCTACCAGCAGACGCGAAACGGAAGTTTGATCACCCAAAGCACGCATCAG]




>consensus_2328#0
CCGCCCACGCGTCCGGCGCGCACCGCGGTGGTGACGGACCGGTTTCACGGGGACGGCGTT
AGAATTGGTTCCGCGACACTTCGTTTTTTTTCCTTTCTTTCTTTGTTTCGTTCTGGTTCT
ATTAGTTGCTCAGTTCCGCGTCTTCTAGTGCCCATTGTTCGTACGTTGTGTATTTTTCTA
GCGTGTGTGCGTGTGTGTGTGTTCTAGCGGCGTAGTCGCGGTGTATTTGCGCTATATTAG
TTATCGCGCGACGTGCCCCTTTTTTTTGCTGCTACTGCCGTTGTCCGTGAGTGGATAAAT
AGAGCTGCGGGGAGGGCTTGCAAAAATATATATCAAATGGTGTGATATATGCGCGAGAGG
ACGGGGCTTGTGTGGTCAAGAGGACAAGTACAGACGACGGCGACAATTTCTTTTGCTAAC
CAACCCCCAGCAGCGCAATCAGCATCCCAGGGAGAAGGAGGGGTGGTTTTGTTGCCGCAT
TTGTGCCGCTGCCTATTGACGCGTCCGAGTTGCTAATTTGCATGCTGCCGCCGCCTGTGC
TACCCCTCCGTGCTACCAGCAGACGCGAAACGGAAGTTTGATCACCCAAAGCACGCATCA
G

consensusID : consensus_2328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [CCGCGTCGGTTGAGGGAGTAGTGTGTGCCAGCCTGTGCCCGTACCTCTCAGCCAGCCAGCTAGACTGTCCCTGCGATTTTTTGCGCGCACCGCGGTGGTGACGGACCGGTTTCACGGGGACGGCGTTAGAATTGGTTCCGCGACACTTCGTTTTTTTTCCTTTCTTTCTTTGTTTCGTTCTGGTTCTATTAGTTGCTCAGTTCCGCGTCTTCTAGTGCCCATTGTTCGTACGTTGTGTATTTTTCTAGCGTGTGTGCGTGTGTGTGTGTTCTAGCGGCGTAGTCGCGGTGTATTTGCGCTATATTAGTTATCGCGCGACGTGCCCCTTTTTTTTGCTGCTACTGCCGTTGTCCGTGAGTGGATAAATAGAGCTGCGGGGAGGGCTTGCAAAAATATATATCAAATGGTGTGATATATGCGCGAGAGGACGGGGCTTGTGTGGTCAAGAGGACAAGTACAGACGACGGCGACAATTTCTTTTGCTAACCAACCCCCAGCAGCGCAATCAGCATCCCAGGGAGAAGGAGGGTGGTTTTGTTGCCGCATTTGTGCCGCTGCCTATTGACGCGTCCGAGTTGCTAATTTGCATGCTGCCGC]

[+] EMBL BM624696             [CCGCGTCGGTTGAGGGAGTAGTGTGTGCCAGCCTGTGCCCGTACCTCTCAGCCAGCCAGCTAGACTGTCCCTGCGATTTTTTGCGCGCACCGCGGTGGTGACGGACCGGTTTCACGGGGACGGCGTTAGAATTGGTTCCGCGACACTTCGTTTTTTTTCCTTTCTTTCTTTGTTTCGTTCTGGTTCTATTAGTTGCTCAGTTCCGCGTCTTCTAGTGCCCATTGTTCGTACGTTGTGTATTTTTCTAGCGTGTGTGCGTGTGTGTGTGTTCTAGCGGCGTAGTCGCGGTGTATTTGCGCTATATTAGTTATCGCGCGACGTGCCCCTTTTTTTTGCTGCTACTGCCGTTGTCCGTGAGTGGATAAATAGAGCTGCGGGGAGGGCTTGCAAAAATATATATCAAATGGTGTGATATATGCGCGAGAGGACGGGGCTTGTGTGGTCAAGAGGACAAGTACAGACGACGGCGACAATTTCTTTTGCTAACCAACCCCCAGCAGCGCAATCAGCATCCCAGGGAGAAGGAGGGTGGTTTTGTTGCCGCATTTGTGCCGCTGCCTATTGACGCGTCCGAGTTGCTAATTTGCATGCTGCCGC]




>consensus_2328#1
CCGCGTCGGTTGAGGGAGTAGTGTGTGCCAGCCTGTGCCCGTACCTCTCAGCCAGCCAGC
TAGACTGTCCCTGCGATTTTTTGCGCGCACCGCGGTGGTGACGGACCGGTTTCACGGGGA
CGGCGTTAGAATTGGTTCCGCGACACTTCGTTTTTTTTCCTTTCTTTCTTTGTTTCGTTC
TGGTTCTATTAGTTGCTCAGTTCCGCGTCTTCTAGTGCCCATTGTTCGTACGTTGTGTAT
TTTTCTAGCGTGTGTGCGTGTGTGTGTGTTCTAGCGGCGTAGTCGCGGTGTATTTGCGCT
ATATTAGTTATCGCGCGACGTGCCCCTTTTTTTTGCTGCTACTGCCGTTGTCCGTGAGTG
GATAAATAGAGCTGCGGGGAGGGCTTGCAAAAATATATATCAAATGGTGTGATATATGCG
CGAGAGGACGGGGCTTGTGTGGTCAAGAGGACAAGTACAGACGACGGCGACAATTTCTTT
TGCTAACCAACCCCCAGCAGCGCAATCAGCATCCCAGGGAGAAGGAGGGTGGTTTTGTTG
CCGCATTTGTGCCGCTGCCTATTGACGCGTCCGAGTTGCTAATTTGCATGCTGCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2328#0      ------------------------------------------------------------
consensus_2328#1      CCGCGTCGGTTGAGGGAGTAGTGTGTGCCAGCCTGTGCCCGTACCTCTCAGCCAGCCAGC 60
                                                                                  

consensus_2328#0      ----CCGCCCACGCG---TCCGGCGCGCACCGCGGTGGTGACGGACCGGTTTCACGGGGA 53
consensus_2328#1      TAGACTGTCCCTGCGATTTTTTGCGCGCACCGCGGTGGTGACGGACCGGTTTCACGGGGA 120
                          * * **  ***   *   **************************************

consensus_2328#0      CGGCGTTAGAATTGGTTCCGCGACACTTCGTTTTTTTTCCTTTCTTTCTTTGTTTCGTTC 113
consensus_2328#1      CGGCGTTAGAATTGGTTCCGCGACACTTCGTTTTTTTTCCTTTCTTTCTTTGTTTCGTTC 180
                      ************************************************************

consensus_2328#0      TGGTTCTATTAGTTGCTCAGTTCCGCGTCTTCTAGTGCCCATTGTTCGTACGTTGTGTAT 173
consensus_2328#1      TGGTTCTATTAGTTGCTCAGTTCCGCGTCTTCTAGTGCCCATTGTTCGTACGTTGTGTAT 240
                      ************************************************************

consensus_2328#0      TTTTCTAGCGTGTGTGCGTGTGTGTGTGTTCTAGCGGCGTAGTCGCGGTGTATTTGCGCT 233
consensus_2328#1      TTTTCTAGCGTGTGTGCGTGTGTGTGTGTTCTAGCGGCGTAGTCGCGGTGTATTTGCGCT 300
                      ************************************************************

consensus_2328#0      ATATTAGTTATCGCGCGACGTGCCCCTTTTTTTTGCTGCTACTGCCGTTGTCCGTGAGTG 293
consensus_2328#1      ATATTAGTTATCGCGCGACGTGCCCCTTTTTTTTGCTGCTACTGCCGTTGTCCGTGAGTG 360
                      ************************************************************

consensus_2328#0      GATAAATAGAGCTGCGGGGAGGGCTTGCAAAAATATATATCAAATGGTGTGATATATGCG 353
consensus_2328#1      GATAAATAGAGCTGCGGGGAGGGCTTGCAAAAATATATATCAAATGGTGTGATATATGCG 420
                      ************************************************************

consensus_2328#0      CGAGAGGACGGGGCTTGTGTGGTCAAGAGGACAAGTACAGACGACGGCGACAATTTCTTT 413
consensus_2328#1      CGAGAGGACGGGGCTTGTGTGGTCAAGAGGACAAGTACAGACGACGGCGACAATTTCTTT 480
                      ************************************************************

consensus_2328#0      TGCTAACCAACCCCCAGCAGCGCAATCAGCATCCCAGGGAGAAGGAGGGGTGGTTTTGTT 473
consensus_2328#1      TGCTAACCAACCCCCAGCAGCGCAATCAGCATCCCAGGGAGAAGGAGGG-TGGTTTTGTT 539
                      ************************************************* **********

consensus_2328#0      GCCGCATTTGTGCCGCTGCCTATTGACGCGTCCGAGTTGCTAATTTGCATGCTGCCGCCG 533
consensus_2328#1      GCCGCATTTGTGCCGCTGCCTATTGACGCGTCCGAGTTGCTAATTTGCATGCTGCCGC-- 597
                      **********************************************************  

consensus_2328#0      CCTGTGCTACCCCTCCGTGCTACCAGCAGACGCGAAACGGAAGTTTGATCACCCAAAGCA 593
consensus_2328#1      ------------------------------------------------------------
                                                                                  

consensus_2328#0      CGCATCAG 601
consensus_2328#1      --------