These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2331#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAAGGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTACGCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCACCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGACCCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAGGAGGTGAAACGCCGCACCGATGTTGTAGCGCGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGGTCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTGCCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGCAATGCTTGGCAG] [+] EMBL BM631615 [CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAAGGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTACGCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCACCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGACCCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAGGAGGTGAAACGCCGCACCGATGTTGTAGCGCGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGGTCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTGCCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGCAATGCTTGGCAG] consensusID : consensus_2331#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 128 fasta sequence [GCCCCGAGGTTTNACGGTGGCACGGTGCCGGTCAGCTTCCTCCTTCGAGGAGGTGAAACGCCGACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGG] [+] EMBL AL697384 [GCCCCGAGGTTTNACGGTGGCACGGTGCCGGTCAGCTTCCTCCTTCGAGGAGGTGAAACGCCGACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2331#0 CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAA 60 consensus_2331#1 ------------------------------------------------------------ consensus_2331#0 GGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTAC 120 consensus_2331#1 ------------------------------------------------------------ consensus_2331#0 GCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCA 180 consensus_2331#1 ------------------------------------------------------------ consensus_2331#0 CCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGAC 240 consensus_2331#1 ------------------------------------------------------------ consensus_2331#0 CCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAG 300 consensus_2331#1 ---------GCCCCGAGGTTTNACGGTGGCAC-GGTGCCGGTCAGCTTCC-TCCTTCGAG 49 * * *** * ********** ***************** ********* consensus_2331#0 GAGGTGAAACGCCGCACCGATGTTGTAGCG--CGCCGCATCAAGGACCTGTTCGCAGCGA 358 consensus_2331#1 GAGGTGAAACGCCG-ACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGA 108 ************** ******** ***** *************************** consensus_2331#0 TGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGG 418 consensus_2331#1 TGAAAGATCTTTCCCAGCGG---------------------------------------- 128 ******************** consensus_2331#0 TCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTG 478 consensus_2331#1 ------------------------------------------------------------ consensus_2331#0 CCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGC 538 consensus_2331#1 ------------------------------------------------------------ consensus_2331#0 AATGCTTGGCAG 550 consensus_2331#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||