These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [TACGTGGCAGCAAGTTCATACATCTGCGGAGCCTGCCGTTCGGTTCGGCGCGGTGTGTATTTACATTGTGTTTTTCCGCATTTGACTGTCGTGCGTGTGTGTGTGTTTGAAAGTGCGTGTGTGTGTGTGTTTTCGCAAGACAAAGTCACATACACACAACGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACACACTCATTCAACCCTCATTTAGTCGTAATGCCACGGGGCAGGGAAGGATACTCTGTTTCAACGTGTTTTACCAAATGCTACTAGTTCAAATAGAGGGCGCCACCAGCGCCCAGTGTGTCCAGCAGTTGGTGTTGGTGGCAAGGCGAACCCTTCTTCTTTAAATGTGTACATTTTGTTCCATTTTCGTACCGCAGCAGCTCGTGCATG] [+] EMBL BX617714 [TACGTGGCAGCAAGTTCATACATCTGCGGAGCCTGCCGTTCGGTTCGGCGCGGTGTGTATTTACATTGTGTTTTTCCGCATTTGACTGTCGTGCGTGTGTGTGTGTTTGAAAGTGCGTGTGTGTGTGTGTTTTCGCAAGACAAAGTCACATACACACAACGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACACACTCATTCAACCCTCATTTAGTCGTAATGCCACGGGGCAGGGAAGGATACTCTGTTTCAACGTGTTTTACCAAATGCTACTAGTTCAAATAGAGGGCGCCACCAGCGCCCAGTGTGTCCAGCAGTTGGTGTTGGTGGCAAGGCGAACCCTTCTTCTTTAAATGTGTACATTTTGTTCCATTTTCGTACCGCAGCAGCTCGTGCATG] consensusID : consensus_2336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [CCGCGGACGCGTGGGGTGTGTGTGTGTGTGTGTTTGCTACTATTGGCCCCTTGTTCGGTGCACTTAGGTTCGGTCACAGTGGGTGTGAGTGTGTATGTGTGTGTCGTCCATTAGGTGTTGTATTTATTCTCCATCGCTACTTGGATTCTCGATTTAAATGGTGAACTAATGTTAATAGATGTTTGTAGTACGATCAAATAGTAACATTATTATATCGTCACACTCACAACCCACACACACACACACATACACACATCGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACACACACTCATTCAACCCTCATTAGTCGTAATGCCACGGGGCAGGGAAG] [+] EMBL BM597747 [CCGCGGACGCGTGGGGTGTGTGTGTGTGTGTGTTTGCTACTATTGGCCCCTTGTTCGGTGCACTTAGGTTCGGTCACAGTGGGTGTGAGTGTGTATGTGTGTGTCGTCCATTAGGTGTTGTATTTATTCTCCATCGCTACTTGGATTCTCGATTTAAATGGTGAACTAATGTTAATAGATGTTTGTAGTACGATCAAATAGTAACATTATTATATCGTCACACTCACAACCCACACACACACACACATACACACATCGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGGCACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGTGTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCGTACCGTGTAACATTGCCACGCGCATACACACACACACACACACTCATTCAACCCTCATTAGTCGTAATGCCACGGGGCAGGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2336#0 ------------------------------------------------------------ consensus_2336#1 CCGCGGACGCGTGGGGTGTGTGTGTGTGTGTGTTTGCTACTATTGGCCCCTTGTTCGGTG 60 consensus_2336#0 ---------TACGTGGCAGCAAGTTCATACATCTGCGGAGCCTGCCGTTCGGTTCGGCGC 51 consensus_2336#1 CACTTAGGTTCGGTCACAGTGGGTGTGAGTGTGTATGT-GTGTGTCGTCCA-TTAGGTGT 118 * ** *** ** * * * * ** *** * ** ** * consensus_2336#0 GGTGTGTATT-TACATTG-TGTTT---TTCCGCATTTGACTGTCGTGCGTGTGT----GT 102 consensus_2336#1 TGTATTTATTCTCCATCGCTACTTGGATTCTCGATTTAAATGGTGAACTAATGTTAATAG 178 ** * **** * *** * * ** *** **** * ** * * *** consensus_2336#0 GTGTTTGAA---------AGTGCGTGTGTGTGTGTGTTTTCGCA------------AGAC 141 consensus_2336#1 ATGTTTGTAGTACGATCAAATAGTAACATTATTATATCGTCACACTCACAACCCACACAC 238 ****** * * * * * * * ** ** * ** consensus_2336#0 AAAGTCACATACACACAACGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGG 201 consensus_2336#1 ACACACACATACACACATCGTGTTTTTATGTCGTTTGTTGCGTCACAGTCGTGGTTCAGG 298 * * ************ ****************************************** consensus_2336#0 CACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGT 261 consensus_2336#1 CACAGGTAACAAAAAGAATAGGGATGATTATTCAGTCCCACACTAAGCCATAAAATAGGT 358 ************************************************************ consensus_2336#0 GTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCG 321 consensus_2336#1 GTAGTCACTCACGCACATATGCTCATCTTACGGATCAATGTCGTTTGCTTTCGTACACCG 418 ************************************************************ consensus_2336#0 TACCGTGTAACATTGCCACGCGCATACACACACACACACAC--TCATTCAACCCTCATTT 379 consensus_2336#1 TACCGTGTAACATTGCCACGCGCATACACACACACACACACACTCATTCAACCCTCATT- 477 ***************************************** **************** consensus_2336#0 AGTCGTAATGCCACGGGGCAGGGAAGGATACTCTGTTTCAACGTGTTTTACCAAATGCTA 439 consensus_2336#1 AGTCGTAATGCCACGGGGCAGGGAAG---------------------------------- 503 ************************** consensus_2336#0 CTAGTTCAAATAGAGGGCGCCACCAGCGCCCAGTGTGTCCAGCAGTTGGTGTTGGTGGCA 499 consensus_2336#1 ------------------------------------------------------------ consensus_2336#0 AGGCGAACCCTTCTTCTTTAAATGTGTACATTTTGTTCCATTTTCGTACCGCAGCAGCTC 559 consensus_2336#1 ------------------------------------------------------------ consensus_2336#0 GTGCATG 566 consensus_2336#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||