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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[AGNAATGCCCCCAGGCTTAACATCCCTGTTTTTTTTTTCTTTTTTTTCTATCTCAAAACTCGCTCGCTCTCTTTCACACACACTATTTTTCACTCCCACAATCGCTCTCTCTCTCTCTCTCTCTTTCGCGATCTCTCAGTTGCACAGTAAAAAGTTCACCAGTGCGTTGCGGTCGACGGGGCAAACTGCATCACCAACGCTTCTTCGCCCGGCATTGGTGTGACGAAGGAAAGGGGTGAGCACGGGGCGGGGTTGGGTTGGGTTATGGGGAGAGGGGGGGCTGAACGTTTGCAACTTATGCTCTCACACACTCACGGGGTTGGCGTGGGCTGGACACGGAGGGCAGGTTGCCATACGGGGGGATTNNCCNCCCCCCACAAAAAATAAACACACACCACCCCACANGAAGCGATTTTTTGTAGAGTAGTAACNCACCCCAAAAAAGNGGGGGAGAAAAAAAGTTTTNTTTCCCCCGGGGAACNACAANAAAAAACCCACATNTANATACATATATAGACAATAGTNACATTCGGGGGCCCCCTNTTGGGGGGGAGGAAACACCTTGTGNGANCGNGNGTGACAAAAACAGTNTTTTNCAAAAAGGAGCAAGGTAAGGTAGGAGGAAAAAACAGGTAGGTAATGGAGANGGAGAGAAAAACACAAATGAAAAAAGTTATTGGTGGGNGGAGACGANCGNGAGNAAACAAAAATGTGTGAGATGGNNGGAGAACAAAGCTGGGGACAAAAACATTTTTCCCACCGTTATCTAGGGGGGCTTAGAGA]
[+] EMBL AL697520 [AGNAATGCCCCCAGGCTTAACATCCCTGTTTTTTTTTTCTTTTTTTTCTATCTCAAAACTCGCTCGCTCTCTTTCACACACACTATTTTTCACTCCCACAATCGCTCTCTCTCTCTCTCTCTCTTTCGCGATCTCTCAGTTGCACAGTAAAAAGTTCACCAGTGCGTTGCGGTCGACGGGGCAAACTGCATCACCAACGCTTCTTCGCCCGGCATTGGTGTGACGAAGGAAAGGGGTGAGCACGGGGCGGGGTTGGGTTGGGTTATGGGGAGAGGGGGGGCTGAACGTTTGCAACTTATGCTCTCACACACTCACGGGGTTGGCGTGGGCTGGACACGGAGGGCAGGTTGCCATACGGGGGGATTNNCCNCCCCCCACAAAAAATAAACACACACCACCCCACANGAAGCGATTTTTTGTAGAGTAGTAACNCACCCCAAAAAAGNGGGGGAGAAAAAAAGTTTTNTTTCCCCCGGGGAACNACAANAAAAAACCCACATNTANATACATATATAGACAATAGTNACATTCGGGGGCCCCCTNTTGGGGGGGAGGAAACACCTTGTGNGANCGNGNGTGACAAAAACAGTNTTTTNCAAAAAGGAGCAAGGTAAGGTAGGAGGAAAAAACAGGTAGGTAATGGAGANGGAGAGAAAAACACAAATGAAAAAAGTTATTGGTGGGNGGAGACGANCGNGAGNAAACAAAAATGTGTGAGATGGNNGGAGAACAAAGCTGGGGACAAAAACATTTTTCCCACCGTTATCTAGGGGGGCTTAGAGA]
consensusID : consensus_2349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[TCCCACAATCGCTCTCTCTCTCTCTCTCTCTTTCGCGATCTCTCAGTTGCACAGTAAAAAGTTCACCAGTGCGTTGCGGTCGACGGGGCAAACTGCATCACCAACGCTTCTTCGCCCGGCATTGGTGTGACGAAGGAAAGGGGTGAGCACGGGGCGGGGTTGGGTTGGGTTTGGGGAGAGGGGGGGCTGAACGTTTTGCAACTTATGCTCTCACACACTCACGGGGTTGGCGTGGGCTGGACACGGAGGGCAGGTTGCATACGGTCGCGTGGCCAGGATTCGCAACTTTTTTTGCTGGCGGATAGGGAGGGAAATGGGAGGAGATCTGTGTGTGTGTGGAGGTGGGATCCGAATTGAAGCCCCCGGAGAGGTGGTGGTGGTGGTGGTTGTATATGTCAGCAACAACCCCGCACAAATCGAACGAAACGGCTCCGCGAGATGACGAAATCCGCCGATTCGTTCCCCAACGGCCGCCACTGAGCCGGAGCAAAACAACAACAGCAACAAAAACGGGCAAAAAGCAGCAACACACACACACGCACCGACGATTCACGGAGATGAGTAATCCAAGCAGAACACCTTCCCCCACCTCCTCCACCTCCTCTTGGGCGATGGCGATGATGATGATGCGG]
[-] EMBL BM577782 [TCCCACAATCGCTCTCTCTCTCTCTCTCTCTTTCGCGATCTCTCAGTTGCACAGTAAAAAGTTCACCAGTGCGTTGCGGTCGACGGGGCAAACTGCATCACCAACGCTTCTTCGCCCGGCATTGGTGTGACGAAGGAAAGGGGTGAGCACGGGGCGGGGTTGGGTTGGGTTTGGGGAGAGGGGGGGCTGAACGTTTTGCAACTTATGCTCTCACACACTCACGGGGTTGGCGTGGGCTGGACACGGAGGGCAGGTTGCATACGGTCGCGTGGCCAGGATTCGCAACTTTTTTTGCTGGCGGATAGGGAGGGAAATGGGAGGAGATCTGTGTGTGTGTGGAGGTGGGATCCGAATTGAAGCCCCCGGAGAGGTGGTGGTGGTGGTGGTTGTATATGTCAGCAACAACCCCGCACAAATCGAACGAAACGGCTCCGCGAGATGACGAAATCCGCCGATTCGTTCCCCAACGGCCGCCACTGAGCCGGAGCAAAACAACAACAGCAACAAAAACGGGCAAAAAGCAGCAACACACACACACGCACCGACGATTCACGGAGATGAGTAATCCAAGCAGAACACCTTCCCCCACCTCCTCCACCTCCTCTTGGGCGATGGCGATGATGATGATGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2349#0 AGNAATGCCCCCAGGCTTAACATCCCTGTTTTTTTTTTCTTTTTTTTCTATCTCAAAACT 60
consensus_2349#1 ------------------------------------------------------------
consensus_2349#0 CGCTCGCTCTCTTTCACACACACTATTTTTCACTCCCACAATCGCTCTCTCTCTCTCTCT 120
consensus_2349#1 ---------------------------------TCCCACAATCGCTCTCTCTCTCTCTCT 27
***************************
consensus_2349#0 CTCTTTCGCGATCTCTCAGTTGCACAGTAAAAAGTTCACCAGTGCGTTGCGGTCGACGGG 180
consensus_2349#1 CTCTTTCGCGATCTCTCAGTTGCACAGTAAAAAGTTCACCAGTGCGTTGCGGTCGACGGG 87
************************************************************
consensus_2349#0 GCAAACTGCATCACCAACGCTTCTTCGCCCGGCATTGGTGTGACGAAGGAAAGGGGTGAG 240
consensus_2349#1 GCAAACTGCATCACCAACGCTTCTTCGCCCGGCATTGGTGTGACGAAGGAAAGGGGTGAG 147
************************************************************
consensus_2349#0 CACGGGGCGGGGTTGGGTTGGGTTATGGGGAGAGGGGGGGCTGAACGTTT-GCAACTTAT 299
consensus_2349#1 CACGGGGCGGGGTTGGGTTGGGTT-TGGGGAGAGGGGGGGCTGAACGTTTTGCAACTTAT 206
************************ ************************* *********
consensus_2349#0 GCTCTCACACACTCACGGGGTTGGCGTGGGCTGGACACGGAGGGCAGGTTGCCATACGGG 359
consensus_2349#1 GCTCTCACACACTCACGGGGTTGGCGTGGGCTGGACACGGAGGGCAGGTTGC-ATACGGT 265
**************************************************** ******
consensus_2349#0 GGGATTNNCCNCCCCCCACAAAAAATAAACACACACCACCCCACANGAAGCGATTTTTTG 419
consensus_2349#1 CGCGT-GGCCAGGATTCGCAACTTTT-----TTTGCTGGCGGATAGGGAGGGAAAT---- 315
* * ** * *** * * * * * * ** ** *
consensus_2349#0 TAGAGTAGTAACNCACCCCAAAAAAGNGGGGGAGAAAAAAAGTTTTNTTTCCCCCGGGGA 479
consensus_2349#1 --GGGAGGAGATCTGTGT---GTGTGTGGAGGTGGGATCCGAATTGAAGCCCCCGGAGAG 370
* * * * * ** ** * * ** **** * *
consensus_2349#0 ACNACAANAAAAAACCCACATNTANATACATATATAGACAATAGTNACATTCGGGGGCCC 539
consensus_2349#1 GTGGTGGTGGTG---------GTGGTTGTATATGTCAGCAACAACCCCGCACAAATCGAA 421
* * **** * *** * * *
consensus_2349#0 CCTNTTGGGGGGGAGGAAACACCTTGTGNGANCGNGNGTGACAAAAACAGTNTTTTNCAA 599
consensus_2349#1 CGAAACGGCTCCGCGAGATGACGAAATCCGCCGATTCGTT-CCCCAACGGCCGCCACTGA 480
* ** * * * ** * * ** * *** * *
consensus_2349#0 AAAGGAGCAAGGTAAGGTAGGAGGAAAAAACAGGTAGGTAATGGAGANGGAGAGAAAAAC 659
consensus_2349#1 GCCGGAGCAAAACAACAACAGCAACAAAAACGGGCAAAAAGCAGCAACACACACACACGC 540
******* ** * ****** ** * * * * * * * * *
consensus_2349#0 ACAAATGAA----AAAAGTTATTGGTGGGNGGAGACGANCGNGAGNAAACAAAAATGTGT 715
consensus_2349#1 ACCGACGATTCACGGAGATGAGTAATCCAAGCAGAACACCTTCCCCCACCTCCTCCACCT 600
** * ** * * * * * * *** * * * * *
consensus_2349#0 GAGATGGNNGGAGAACAAAGCTGGGGACAAAAACATTTTTCCCACCGTTATCTAGGGGGG 775
consensus_2349#1 CCTCTTGGGCGATGGCGATGATGATGATGCGG---------------------------- 632
* * ** * * * ** **
consensus_2349#0 CTTAGAGA 783
consensus_2349#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||