These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CAAGAATCGCCCCCGAGGAGGACTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGGTTGGGGAAGGAGAGTTGCAGTGCTACAGGACACACCACTTTAATTCGTTTTGTCCCACCTTTCCCGCCGCAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTGGAAGGGTTCGATCGTGGCGATTGTCAACTGCTCAACACGGACTCAAACTCCTCCCAGCGGGCGATGATCGAAACGCAGGTCCAACCGCTGGCGGCCAATGTGACGATGGTGATAGTGATTATAAAGTCGGTGGTTCCGGTCCTGAGTGCCCTGCTGCTCGGTGCGTGGTCTGATCGTTACGGTCGAAAGCCTGCCATGCTGATCGCG] [+] EMBL AL933745 [CAAGAATCGCCCCCGAGGAGGACTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGGTTGGGGAAGGAGAGTTGCAGTGCTACAGGACACACCACTTTAATTCGTTTTGTCCCACCTTTCCCGCCGCAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTGGAAGGGTTCGATCGTGGCGATTGTCAACTGCTCAACACGGACTCAAACTCCTCCCAGCGGGCGATGATCGAAACGCAGGTCCAACCGCTGGCGGCCAATGTGACGATGGTGATAGTGATTATAAAGTCGGTGGTTCCGGTCCTGAGTGCCCTGCTGCTCGGTGCGTGGTCTGATCGTTACGGTCGAAAGCCTGCCATGCTGATCGCG] consensusID : consensus_2352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [CATGGAAGAAGGACGCTCGGACAGTGTGTACTCCAGTGGCGAAGAGGACCTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCAATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTG] [+] EMBL AL697534 [CATGGAAGAAGGACGCTCGGACAGTGTGTACTCCAGTGGCGAAGAGGACCTGTTCGCCAAGCAGAGCCTGATGAGGTTGCGCAATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAGCTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2352#0 ---------------------CAAGAATCGCCCC-----CGAGGAGGAC-TGTTCGCCAA 33 consensus_2352#1 CATGGAAGAAGGACGCTCGGACAGTGTGTACTCCAGTGGCGAAGAGGACCTGTTCGCCAA 60 ** * ** *** ****** ********** consensus_2352#0 GCAGAGCCTGATGAGGTTGCGCA-TGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAG 92 consensus_2352#1 GCAGAGCCTGATGAGGTTGCGCAATGCGGCCCGTTGGCGCGAGCAGGCCCAGTACATTAG 120 *********************** ************************************ consensus_2352#0 CTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAG-GTTGGGGAAGGA 151 consensus_2352#1 CTTCGAACCTGCCCTGCTGGTTTTTTGCTTTGCCATGAGCATCTCAGAGGTCGTCCTGGC 180 *********************************************** * * * ** consensus_2352#0 GAGTTGCA--GTGCTACAGGACACACCACTTTAATTCGTTTTGTCCCACCTTTCCCGCCG 209 consensus_2352#1 GAATCATATCATCCTGCAG-ACGTGCCTCGTG---------------------------- 211 ** * * * ** *** ** ** * * consensus_2352#0 CAGAGGTCGTCCTGGCGAATCATATCATCCTGCAGACGTGCCTCGTGGAAGGGTTCGATC 269 consensus_2352#1 ------------------------------------------------------------ consensus_2352#0 GTGGCGATTGTCAACTGCTCAACACGGACTCAAACTCCTCCCAGCGGGCGATGATCGAAA 329 consensus_2352#1 ------------------------------------------------------------ consensus_2352#0 CGCAGGTCCAACCGCTGGCGGCCAATGTGACGATGGTGATAGTGATTATAAAGTCGGTGG 389 consensus_2352#1 ------------------------------------------------------------ consensus_2352#0 TTCCGGTCCTGAGTGCCCTGCTGCTCGGTGCGTGGTCTGATCGTTACGGTCGAAAGCCTG 449 consensus_2352#1 ------------------------------------------------------------ consensus_2352#0 CCATGCTGATCGCG 463 consensus_2352#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||