These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [GCCAATGAAGCGCCAGCAAAACCGGACGTGGACTTGAAGCATGACACAGCGACAGTGCGATCTGAATCGGCTACTAGCTTAGAATCGAATAAATTGAGCACCCCTGATACTCCGGCCAATGATCCGATGGATATGGAAGTCGATATGAATATCATAAAAGCACCGATCGCAGGCAAAGTCATGTCCGTGGAAGGAAACAGCAACAGCAGCACTATTGGATCGAGCCGTGCACCGGAATCTAGCGCCATGCTGATAGATGACGACGACGATGAACCGTACTCTCCTGGAGGTGGGAGCGATGATAGTAATTTCGCCGATGTGACCGCTATCGTCGATACGTCAAAGGTGGCACGTACTTCAACCTCCGAACACGGGGTTGATATAGAAGAAGAGCGAATACGCATCGCCATGGATGAACTGAACAGGAAAATTGCAGAACAAAAGAACGAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCC] [+] EMBL BX619026 [GCCAATGAAGCGCCAGCAAAACCGGACGTGGACTTGAAGCATGACACAGCGACAGTGCGATCTGAATCGGCTACTAGCTTAGAATCGAATAAATTGAGCACCCCTGATACTCCGGCCAATGATCCGATGGATATGGAAGTCGATATGAATATCATAAAAGCACCGATCGCAGGCAAAGTCATGTCCGTGGAAGGAAACAGCAACAGCAGCACTATTGGATCGAGCCGTGCACCGGAATCTAGCGCCATGCTGATAGATGACGACGACGATGAACCGTACTCTCCTGGAGGTGGGAGCGATGATAGTAATTTCGCCGATGTGACCGCTATCGTCGATACGTCAAAGGTGGCACGTACTTCAACCTCCGAACACGGGGTTGATATAGAAGAAGAGCGAATACGCATCGCCATGGATGAACTGAACAGGAAAATTGCAGAACAAAAGAACGAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCC] consensusID : consensus_2366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [GAATCGCCCGAGGTTAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGCGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCCAACCTATCACAAATTCTGGCCAGTATTAAGGGAGGCAGTAATACACGCAGCAGGTGTTGCAAGTGTGCCGTCCGTAGAAAACGTCGGCGAAGTTTCTTCTGGGCCATCTTCCGGCTCACTAGCGGCAGAACCCGTAACGGCTGCCACGAACCGAACTTCCGAAGCGAATGCAGACGAGGAGGAGNGAGGAATACAACCCGACGACACCTTCCCTGTACTGTGGATACAAAGCTGCACCATCTATTCCTTACTCTGCCATACCAGTTGCCAACAGTCAAGGTGATATAGATGAACGCATTCTCCCTGCAACGCTGCTGCCAGCGACGGTGNGCGGTACCAAACTGCTGCGTCGTATATGATCCTGTCACTTCCCTTACTGCTGCTGGAGACAGT] [+] EMBL AL933271 [GAATCGCCCGAGGTTAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGCGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATACCCATACCTCCCAACCTATCACAAATTCTGGCCAGTATTAAGGGAGGCAGTAATACACGCAGCAGGTGTTGCAAGTGTGCCGTCCGTAGAAAACGTCGGCGAAGTTTCTTCTGGGCCATCTTCCGGCTCACTAGCGGCAGAACCCGTAACGGCTGCCACGAACCGAACTTCCGAAGCGAATGCAGACGAGGAGGAGNGAGGAATACAACCCGACGACACCTTCCCTGTACTGTGGATACAAAGCTGCACCATCTATTCCTTACTCTGCCATACCAGTTGCCAACAGTCAAGGTGATATAGATGAACGCATTCTCCCTGCAACGCTGCTGCCAGCGACGGTGNGCGGTACCAAACTGCTGCGTCGTATATGATCCTGTCACTTCCCTTACTGCTGCTGGAGACAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2366#0 GCCAATGAAGCGCCAGCAAAACCGGACGTGGACTTGA--AGCATGACACAGCGACAGTGC 58 consensus_2366#1 ------GAATCGCCCG-AGGTTAAATCGTTGGTCTGATCAGCATGGCCGAACTTAAGCGA 53 *** **** * * *** * *** ****** * * * ** * consensus_2366#0 GATCTGAATCGGCTACTAGCTTAGAATCG-----AATAAATTGAGCACCCCTGATACTCC 113 consensus_2366#1 GGACGAAATTAATT-CCGCCTTACCGCCGTCACTGATCAACGAAATACCCAT-ACCTCCC 111 * * *** * * **** ** ** ** * **** * * ** consensus_2366#0 GGCCAATGATCCGATGGATATGGAAGTCGATATGAATATCATAAAAGCACCGATCGCAGG 173 consensus_2366#1 AACCTATCACAAATTCTGGCCAGTATTAAGGGAGGCAGTAATACACGCAGCAGGTGTTGC 171 ** ** * * * * * * * *** * *** * * * consensus_2366#0 CAAAGTCATGTCCGTGGAAGGAAACAGCAACAGCAGCACTATTGGATCGAGCCGTGCACC 233 consensus_2366#1 AAGTGTGCCGTCCGTAGA---AAACGTCGGCGAAGTTTCTTCTGG-----GCCATCTTCC 223 * ** ****** ** **** * * ** *** *** * ** consensus_2366#0 GGAAT-CTAGCGCCATGCTGATAGATGACGACGACGATGAACCGTACTCTCCTGGAGGTG 292 consensus_2366#1 GGCTCACTAGCGGCAGA---ACCCGTAACGGCTGCCACGAACCGAACTTCC---GAAGCG 277 ** ****** ** * * *** * * * ****** *** * ** * * consensus_2366#0 GGAGCGATGATAGTAATTTCGCCGATGTGACCGCTATCGTCGATACGTCAAAGGTGGCAC 352 consensus_2366#1 AATGCAGACGAGGAGGAGNGAGGAATACAACC-----CGACGACACCTTCCCTGTACTGT 332 ** * ** *** ** *** ** * ** consensus_2366#0 GTACTTCAACCTCCGAACACGGGGTTGATATAGAAGAAGAGCGAATACGCATCGCCATGG 412 consensus_2366#1 GGATACAAAGCTGC-ACCATCTATTCCTTACTCTGCCATACCAGTTGCCAACAGTCA-AG 390 * * ** ** * * ** * ** * * * * * * * ** * consensus_2366#0 ATGAACTGAACAGGAAAATTGCAGAACAAAAGAACGAAATCGTTGGTC-TGATCAGCATG 471 consensus_2366#1 GTGATATAGATGAACGCATTCT----CCCTGCAACGCTGCTGCCAGCGACGGTGNGCGGT 446 *** * * *** * **** * * * * ** consensus_2366#0 GCCGAACTTAAGGAGGACGAAATTAATTCCGCCTTACCGCCGTCACTGATCAACGAAATA 531 consensus_2366#1 ACCAAACTGCTG--CGTCGTATATGATCCTGTC--ACTTCCCTTACTGCTGCTGGAGACA 502 ** **** * * ** * * ** * * * ** ** * **** * ** * * consensus_2366#0 CCCATACCTCCC 543 consensus_2366#1 GT---------- 504 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||