These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence [GGCCAGAATCGGNCACGAGGTCCGGTGTACGTTGAAACGAGTGAGCGTGCTACAGCGTGAGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGGCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGCGTACCCAGGATTTGGTAAACTTTCACGTATGAACGTTTTGACCGGAGGGTTGCTCAACGCTGGCAAAAAGTTTCGGGGAAGCCAACNGGGTCGGACAAATTGAAGCGAGCCGAAAGTGAACAGGAAGGATATTCAACNGGGCCGATTAATTAACCGGGCCCAACCGGATAAGGCAGGCGACACGTTTTGAACCTGGCCATGGGTTGACACACGTTTTTAGCNAAGACTGGNCACCGGGACCAACATTGACCGGCCAGCCTANGGAAGCGTATCATTCCGGGTGTTCACAACCGGAGTTCCGCAAAAGCCAACGGGCAAGCGGGTTGCCTAAGTGTTTGCACCGGGACGGTTTGCCAGGGGACCCCGGTTGGGGTAATTTGGAAACCAATTCCTCCGGGCTTAGGGNTGAGGAATCCATGCGGGTTGNGGTGGCANAGGTTACACCAATTTGGCACGGCCCGGCAAAGATTAACCTGGGACCGGGACGGTTAGTNGTTGCCACACAGGTCTGGTGGAGGTCCAGGAAACAAGACGCCGGTTTCAGGGNGCAATTACCGGGGG] [+] EMBL BX468672 [GGCCAGAATCGGNCACGAGGTCCGGTGTACGTTGAAACGAGTGAGCGTGCTACAGCGTGAGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGGCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGCGTACCCAGGATTTGGTAAACTTTCACGTATGAACGTTTTGACCGGAGGGTTGCTCAACGCTGGCAAAAAGTTTCGGGGAAGCCAACNGGGTCGGACAAATTGAAGCGAGCCGAAAGTGAACAGGAAGGATATTCAACNGGGCCGATTAATTAACCGGGCCCAACCGGATAAGGCAGGCGACACGTTTTGAACCTGGCCATGGGTTGACACACGTTTTTAGCNAAGACTGGNCACCGGGACCAACATTGACCGGCCAGCCTANGGAAGCGTATCATTCCGGGTGTTCACAACCGGAGTTCCGCAAAAGCCAACGGGCAAGCGGGTTGCCTAAGTGTTTGCACCGGGACGGTTTGCCAGGGGACCCCGGTTGGGGTAATTTGGAAACCAATTCCTCCGGGCTTAGGGNTGAGGAATCCATGCGGGTTGNGGTGGCANAGGTTACACCAATTTGGCACGGCCCGGCAAAGATTAACCTGGGACCGGGACGGTTAGTNGTTGCCACACAGGTCTGGTGGAGGTCCAGGAAACAAGACGCCGGTTTCAGGGNGCAATTACCGGGGG] consensusID : consensus_2368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCCCGCAGGTTATGTACGTTGAAACGAGTGACGTGCTACATGCGTGATGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGCTACCCAGGATTTGGTAAACTTTCACTATGACGTTATGACGGAGGTGCTCACGCTGCAAAAGTTCGGACCACGGTCGACAATGAAGCGAGCGAAAGTGAACGAAGATATCAACGGCGATAATAACGGCCCCACGGATAGCAGCAACGTTTTACTGCCTGGGTTGAAATTTTACAAACTGCACGGACACATGACGCAGCTGGAGCGTATCTCGGTGTTTAACGAGTTCCGCAAAGCCACGGCAGCGGTGCTAATTTGCACGGACGTTGCGGCCCGTGGTATTGACATCCCGCTGGTGGATCTGGTGGTGCAGTACCATGCGCCGCAAATACTGGCCGACTATGTTGCACCAGTGATGGGTCGNACAGAGCGTGCAGGGGCACTACGGGCAAGGCCAAGCTGATTCT] [+] EMBL AL713826 [CCCCGCAGGTTATGTACGTTGAAACGAGTGACGTGCTACATGCGTGATGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGCGACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAGCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAATACTGGTTTTCATGGCTACCCAGGATTTGGTAAACTTTCACTATGACGTTATGACGGAGGTGCTCACGCTGCAAAAGTTCGGACCACGGTCGACAATGAAGCGAGCGAAAGTGAACGAAGATATCAACGGCGATAATAACGGCCCCACGGATAGCAGCAACGTTTTACTGCCTGGGTTGAAATTTTACAAACTGCACGGACACATGACGCAGCTGGAGCGTATCTCGGTGTTTAACGAGTTCCGCAAAGCCACGGCAGCGGTGCTAATTTGCACGGACGTTGCGGCCCGTGGTATTGACATCCCGCTGGTGGATCTGGTGGTGCAGTACCATGCGCCGCAAATACTGGCCGACTATGTTGCACCAGTGATGGGTCGNACAGAGCGTGCAGGGGCACTACGGGCAAGGCCAAGCTGATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2368#0 GGCCAGAATCGGNCACGAGGTCCGGTGTACGTTGAAACGAGTGAGCGTGCTACA-GCGTG 59 consensus_2368#1 ------------CCCCGCAGGTTA-TGTACGTTGAAACGAGTGA-CGTGCTACATGCGTG 46 * ** * ******************* ********* ***** consensus_2368#0 A-GACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGC 118 consensus_2368#1 ATGACGCCAACGGTCGAGCAAGGCGCAAACATTTGTACCGATCAGCTTCTTAACGTTGGC 106 * ********************************************************** consensus_2368#0 GACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAG 178 consensus_2368#1 GACTACGTGTCCATACCGGCTACAGTGAAGCAGCGCTACTTAGTGACCGTACCCAAGCAG 166 ************************************************************ consensus_2368#0 GCGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAAT 238 consensus_2368#1 -CGGCTCGTTGCACTGAGCGCACTGATCGTACACGAGCAGCGCCAGAAGCCTTCGAAAAT 225 *********************************************************** consensus_2368#0 ACTGGTTTTCATGGCGTACCCAGGATTTGGTAAACTTTCACGTATGAACGTTTTGACCGG 298 consensus_2368#1 ACTGGTTTTCATGGC-TACCCAGGATTTGGTAAACTTTCAC-TATGA-CGTTATGAC-GG 281 *************** ************************* ***** **** **** ** consensus_2368#0 AGGGTTGCTCAACGCTGGCAAAAAGTTTCGGGGAAGCCAACNGGGTCGGACAAATTGAAG 358 consensus_2368#1 AGG--TGCTCA-CGCTG-CAAAAG--TTCGG-------ACCACGGTCG-ACAA--TGAAG 325 *** ****** ***** ***** ***** * * ***** **** ***** consensus_2368#0 CGAGCCGAAAGTGAACAGGAAGGATATTCAACNGGGCCGATTAATTAACCGGGCCCAACC 418 consensus_2368#1 CGAGC-GAAAGTGAAC---GAAGATAT-CAACGGCGATAATAA------CGGCCCCA--C 372 ***** ********** * ***** **** * * ** * *** **** * consensus_2368#0 GGATAAGGCAGGCGACACGTTTTGAACCTGGCCATGGGTTGACACACGTTTTTAGCNAAG 478 consensus_2368#1 GGATA--GCAG---CAACGTTTTA---CTG--CCTGGGTTGAAA------TTTTACAA-- 414 ***** **** ******* *** * ******** * *** * * consensus_2368#0 ACTGGNCACCGGGACCAACATTGACCGGCCAGCCTANGGAAGCGTATCATTCCGGGTGTT 538 consensus_2368#1 ACTGCAC----GGAC--ACATGACGCAGCTGG--------AGCGTATCTC----GGTGTT 456 **** * **** **** * ** * ******** ****** consensus_2368#0 CACAACCGGAGTTCCGCAAAAGCCAACGGGCAAGCGGGTTGCCTAAGTGTTTGCACCGGG 598 consensus_2368#1 TA--AC--GAGTTCCGCAAAG--CCACGGCAGCGGTGCTAATTTGCACGGACGTTGCGGC 510 * ** ************ * **** * * * * * * *** consensus_2368#0 ACGGTTTGCCAGGGGACCCCGGTTGGGGTAATTTGGAAACCAATTCCTCCGGGCTTAGGG 658 consensus_2368#1 CCG---TGGTATTGACATCCCGCTGGTGGATCTGGTGGTGCAGTACCATGCGCCGCAAAT 567 ** ** * * ** * *** * * * * ** * ** * * * consensus_2368#0 NTGAGGAATCCATGCGG-GTTGNGGTGGCANAGGTTACACCAATTTGGCACGGCCCGGCA 717 consensus_2368#1 ACTGGCCGACTATGTTGCACCAGTGATGGGTCGNACAGAGCGTGCAGGGGCACTACGGGC 627 * * *** * * * * * * * ** * *** consensus_2368#0 AAGATTAACCTGGGACCGGGACGGTTAGTNGTTGCCACACAGGTCTGGTGGAGGTCCAGG 777 consensus_2368#1 AAGGCCAAGCTGATTCT------------------------------------------- 644 *** ** *** * consensus_2368#0 AAACAAGACGCCGGTTTCAGGGNGCAATTACCGGGGG 814 consensus_2368#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||