These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 770 fasta sequence [GACAGGGGCAGATGACCATCTATGCAGCGCGCAAGAACAATATCATACAAAGTTCACGCATGGTCGGGTGTATAATATAACACCCCCGCAACCACATAGAAAGCGAACAGCACCCGTAAAGAAACACAGGAGATCAGCCTGCGCGCACAAAGCTTACCAAACACGGTGCCATCGCGACAGCACACGACGCCGGAAATCGCACAGCACCTCATAACGCCCGAAAGTGCCATCTACCATCAACCCCACGGCGCCGGCCACCACAACAGCCACAACAGCGGCGCCGATACCGGTTCCTCCGCGGCATCCATTTAGGGGATGTATCTGGCCCGGAGGCCAAGCGCTAACCACGAGCATTCTCGACACGGGACACAGCTTCCGCGGCAATACAGTGCCTGGGAGGAGGGAAGCGACTGAGGCACTTCCGCGATCACTGCCCCTGCAGGATGGGAGCTACCCGTGGCATAACAAAACGAAAATCCAACCAGCCGCATTGCAAGCCCACACTACCGAACCACGGACCGGAAAGGGATCACCCAGAAATGGGGGCCGGTGGGCCAGGCACCTGAATAACCCTTAATCCGGCCCCCGGGCCCCGAACGAAACCCCCCCCAACACGTCGGAACCCCGCGCCCAAAACGGGGGGCTAAACAAGAGCCGCAACCCAGGAACTCACCCACAACCCCAAGAAAACCCCAGGCCGGAAACCCCCCCAACCCCAGGAAAATACCACCCGAAACTCGGCCCACGGGGCCCTGTGGGGACCGAAATAA] [+] EMBL BM617899 [GACAGGGGCAGATGACCATCTATGCAGCGCGCAAGAACAATATCATACAAAGTTCACGCATGGTCGGGTGTATAATATAACACCCCCGCAACCACATAGAAAGCGAACAGCACCCGTAAAGAAACACAGGAGATCAGCCTGCGCGCACAAAGCTTACCAAACACGGTGCCATCGCGACAGCACACGACGCCGGAAATCGCACAGCACCTCATAACGCCCGAAAGTGCCATCTACCATCAACCCCACGGCGCCGGCCACCACAACAGCCACAACAGCGGCGCCGATACCGGTTCCTCCGCGGCATCCATTTAGGGGATGTATCTGGCCCGGAGGCCAAGCGCTAACCACGAGCATTCTCGACACGGGACACAGCTTCCGCGGCAATACAGTGCCTGGGAGGAGGGAAGCGACTGAGGCACTTCCGCGATCACTGCCCCTGCAGGATGGGAGCTACCCGTGGCATAACAAAACGAAAATCCAACCAGCCGCATTGCAAGCCCACACTACCGAACCACGGACCGGAAAGGGATCACCCAGAAATGGGGGCCGGTGGGCCAGGCACCTGAATAACCCTTAATCCGGCCCCCGGGCCCCGAACGAAACCCCCCCCAACACGTCGGAACCCCGCGCCCAAAACGGGGGGCTAAACAAGAGCCGCAACCCAGGAACTCACCCACAACCCCAAGAAAACCCCAGGCCGGAAACCCCCCCAACCCCAGGAAAATACCACCCGAAACTCGGCCCACGGGGCCCTGTGGGGACCGAAATAA] consensusID : consensus_237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [CCGATTCGTTTAGGTTCGCGTTTCCATTCCTTCCACTGCTGTGCTGTAATAACGGTCAAGGGCAATGAATATACGGCTGTGCACGTGCACGCTGCTAAAAAGTTCACGGAGGGTCGGGTTTTTACGGAATACGCCCTCAACAACATTGTACGCGAACAGCAGCGGGAAGGATTCGGATGTGATAAGCGTGCGTGGAAAGATCTTATCAAACACGGTGCTATCGCGACAGCACATGACGCCGGAAATCGCACTGCACCTCATAACGCCCGATTGTGCCATCTACCATCAACCCGTCGGCGCCGGCCACCACAACAGCGACAACAGTGGCGCCGATACCGGTTTCTCCGCGGATCCATTTTGGGGATTTTTCTGGCCCGGAGGTCAAGCGCTAACGAGGTTTATTCTTGACACGGGACACGTTTTCCGCGGGAAGACGGTGCTGGAGGTGGGATGCGGCTGTGGCGCTTCCGCGATCGCTGCCCTGCTGGTGGGAGCTACCCGTGTCATAGCAAACGACATCGATCCAGTCGCATTGCC] [+] EMBL BM592866 [CCGATTCGTTTAGGTTCGCGTTTCCATTCCTTCCACTGCTGTGCTGTAATAACGGTCAAGGGCAATGAATATACGGCTGTGCACGTGCACGCTGCTAAAAAGTTCACGGAGGGTCGGGTTTTTACGGAATACGCCCTCAACAACATTGTACGCGAACAGCAGCGGGAAGGATTCGGATGTGATAAGCGTGCGTGGAAAGATCTTATCAAACACGGTGCTATCGCGACAGCACATGACGCCGGAAATCGCACTGCACCTCATAACGCCCGATTGTGCCATCTACCATCAACCCGTCGGCGCCGGCCACCACAACAGCGACAACAGTGGCGCCGATACCGGTTTCTCCGCGGATCCATTTTGGGGATTTTTCTGGCCCGGAGGTCAAGCGCTAACGAGGTTTATTCTTGACACGGGACACGTTTTCCGCGGGAAGACGGTGCTGGAGGTGGGATGCGGCTGTGGCGCTTCCGCGATCGCTGCCCTGCTGGTGGGAGCTACCCGTGTCATAGCAAACGACATCGATCCAGTCGCATTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_237#0 -----------------------------------------------GACAGGGGCAGAT 13 consensus_237#1 CCGATTCGTTTAGGTTCGCGTTTCCATTCCTTCCACTGCTGTGCTGTAATAACGGTCAAG 60 * * ** * consensus_237#0 GACCATC--TATGCAGC-GCGCAAGAACAATATCATACAAAGTTCACGCATGGTCGGGTG 70 consensus_237#1 GGCAATGAATATACGGCTGTGCACGTGCACGCTGCTAAAAAGTTCACGGAGGGTCGGGT- 119 * * ** *** * ** * *** * ** * ** ********** * ******** consensus_237#0 TATAATATAACACCCCCGCAACCACATAGAAAGCGAACAGCACCCGTAAAGAAACACAGG 130 consensus_237#1 TTTTACGGAATACGCCCTCAACAACATTGTACGCGAACAGCAGCGGGAAGGATTCGGATG 179 * * * ** ** *** **** **** * * ********** * * ** ** * * * consensus_237#0 AGATCAGCCTGCGCGCACAAAGCTTACCAAACACGGTGCCATCGCGACAGCACACGACGC 190 consensus_237#1 TGATAAGCGTGCGTGGAAAGATCTTATCAAACACGGTGCTATCGCGACAGCACATGACGC 239 *** *** **** * * * * **** ************ ************** ***** consensus_237#0 CGGAAATCGCACAGCACCTCATAACGCCCGAAAGTGCCATCTACCATCAACCCCACGGCG 250 consensus_237#1 CGGAAATCGCACTGCACCTCATAACGCCCGATTGTGCCATCTACCATCAACCCGTCGGCG 299 ************ ****************** ******************** ***** consensus_237#0 CCGGCCACCACAACAGCCACAACAGCGGCGCCGATACCGGTTCCTCCGCGGCATCCATTT 310 consensus_237#1 CCGGCCACCACAACAGCGACAACAGTGGCGCCGATACCGGTTTCTCCGCGG-ATCCATTT 358 ***************** ******* **************** ******** ******** consensus_237#0 AGGGGATGTATCTGGCCCGGAGGCCAAGCGCTAACCACGAGCATTCTCGACACGGGACAC 370 consensus_237#1 TGGGGATTTTTCTGGCCCGGAGGTCAAGCGCTAACGAGGTTTATTCTTGACACGGGACAC 418 ****** * ************* *********** * * ***** ************ consensus_237#0 AGCTTCCGCGGCAATACAGTGCCTGGGAGGAGGGAAGCGACTGAGGCACTTCCGCGATCA 430 consensus_237#1 GTTTTCCGCGGGAAGACGGTGCT--GGAGGTGGGATGCGGCTGTGGCGCTTCCGCGATCG 476 ******** ** ** **** ***** **** *** *** *** *********** consensus_237#0 CTGCCCCTGCAGGATGGGAGCTACCCGTGGCATAACAAAACGAAAATCCAACCAGCCGCA 490 consensus_237#1 CTGCCC-TGCTGG-TGGGAGCTACCCGTGTCATAGCAAAC--GACATCGATCCAGTCGCA 532 ****** *** ** *************** **** **** * *** * **** **** consensus_237#0 TTGCAAGCCCACACTACCGAACCACGGACCGGAAAGGGATCACCCAGAAATGGGGGCCGG 550 consensus_237#1 TTGCC------------------------------------------------------- 537 **** consensus_237#0 TGGGCCAGGCACCTGAATAACCCTTAATCCGGCCCCCGGGCCCCGAACGAAACCCCCCCC 610 consensus_237#1 ------------------------------------------------------------ consensus_237#0 AACACGTCGGAACCCCGCGCCCAAAACGGGGGGCTAAACAAGAGCCGCAACCCAGGAACT 670 consensus_237#1 ------------------------------------------------------------ consensus_237#0 CACCCACAACCCCAAGAAAACCCCAGGCCGGAAACCCCCCCAACCCCAGGAAAATACCAC 730 consensus_237#1 ------------------------------------------------------------ consensus_237#0 CCGAAACTCGGCCCACGGGGCCCTGTGGGGACCGAAATAA 770 consensus_237#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||