These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [CCGGTGGAGAACGCGAACAAGCGCGATCCGTTCGGCGACAACCGATCGAACGGGTTCGGTGCGGGCGAGCCTGCCGAGACGGGCTTCGGTGACGATTTCAAGTCGTCGAACGGTTTCGCCACCCAGTTCGATGTCGGGTCGAACGGCGGATTTCACGGCGGTACTGCGGCGGCGGGCGGCTTTGGGGAAGACGGGTTCGGTGCGTTTGGGGCGAAAGCGCCGTCGCACGCCATCGGTGGGGGAGCGGCGGATCCGTTCGGATCGGGCGCTGCCGCCGATCCGTTCGGTGATCGGAAAGGTAGCGGCAGTGTAGCAGCAGAGCCCGCCAAAGATGAGTTCGGATGCGATCCGTTTGCCATACTACATGCGCCGACCACTGCCGGTCAAGCACTGTCGCCTAGTCCCAGCAAATCCGTTGCCCCGCCACGTCCGGAATCGCCCAGCCCGGCACTGCCCGCCGAAGAAGGCAAAGCAACCACCACCGCGTCCCGCTCCACCACGGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGAATCTCAAACCCGTTACCTCCCAAACACTGCAACAAGCGTCGCCATCATCGTTCGCCTCAAGCGGGACCGCATTCGGTAGCAATCGT] [+] EMBL BM597330 [CCGGTGGAGAACGCGAACAAGCGCGATCCGTTCGGCGACAACCGATCGAACGGGTTCGGTGCGGGCGAGCCTGCCGAGACGGGCTTCGGTGACGATTTCAAGTCGTCGAACGGTTTCGCCACCCAGTTCGATGTCGGGTCGAACGGCGGATTTCACGGCGGTACTGCGGCGGCGGGCGGCTTTGGGGAAGACGGGTTCGGTGCGTTTGGGGCGAAAGCGCCGTCGCACGCCATCGGTGGGGGAGCGGCGGATCCGTTCGGATCGGGCGCTGCCGCCGATCCGTTCGGTGATCGGAAAGGTAGCGGCAGTGTAGCAGCAGAGCCCGCCAAAGATGAGTTCGGATGCGATCCGTTTGCCATACTACATGCGCCGACCACTGCCGGTCAAGCACTGTCGCCTAGTCCCAGCAAATCCGTTGCCCCGCCACGTCCGGAATCGCCCAGCCCGGCACTGCCCGCCGAAGAAGGCAAAGCAACCACCACCGCGTCCCGCTCCACCACGGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGAATCTCAAACCCGTTACCTCCCAAACACTGCAACAAGCGTCGCCATCATCGTTCGCCTCAAGCGGGACCGCATTCGGTAGCAATCGT] consensusID : consensus_2373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [ATCGCCCAGCCCGGCACTGCCGCCGAATAAGGCAAAGCAACCACCACCGCGTCCCGCTCCACCACGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGTGAATATCATCCGAGTAATAGTAATACTAATAGAGACTAACAATTAACCGCGAAAGCTACTACTGATGGGCGGAGGCAAAGAAAGCGAAACTCGTAGTAGTACTCCCCCTTGGGTCGCGCGCTTGTGTGTGTATCGAGCTAATACTTGAATGCACCACACGTTTGCACACGAGCGCGCGCGCTCCATCTCCAAAATGCACAGCAACCCACTGCAAAACACTCGAAATCATAGTGAAATAGCCATTGAAAGCGTAAATTATAGTCGATTTAGGTGATGCAATAGTGCAACAGTGTTCTTCACTATCAATTACTGAGCGGCACGCTGCGAGTGCAGCAACACACACAAAAAGTATAAGAGGCTCTCTATATTTTGAGTTGAACGTATCTGTTA] [+] EMBL BM620485 [ATCGCCCAGCCCGGCACTGCCGCCGAATAAGGCAAAGCAACCACCACCGCGTCCCGCTCCACCACGACCAATGCAGGGCCCTACGCCTACCAAACCTGCACCACCGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTTGCCGACTTCGACAATAAGTGAATATCATCCGAGTAATAGTAATACTAATAGAGACTAACAATTAACCGCGAAAGCTACTACTGATGGGCGGAGGCAAAGAAAGCGAAACTCGTAGTAGTACTCCCCCTTGGGTCGCGCGCTTGTGTGTGTATCGAGCTAATACTTGAATGCACCACACGTTTGCACACGAGCGCGCGCGCTCCATCTCCAAAATGCACAGCAACCCACTGCAAAACACTCGAAATCATAGTGAAATAGCCATTGAAAGCGTAAATTATAGTCGATTTAGGTGATGCAATAGTGCAACAGTGTTCTTCACTATCAATTACTGAGCGGCACGCTGCGAGTGCAGCAACACACACAAAAAGTATAAGAGGCTCTCTATATTTTGAGTTGAACGTATCTGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2373#0 CCGGTGGAGAACGCGAACAAGCGCGATCCGTTCGGCGACAACCGATCGAACGGGTTCGGT 60 consensus_2373#1 ---------------------ATCGCCCAGCCCGGC-ACTGCCG-CCGAATAAGG-CAAA 36 ** * * **** ** *** **** * * consensus_2373#0 GCGGGCGAGCCTGCCGAGACGGGCTTCG--GTGACGATTTCAAGTCGTCGAACGGTTTCG 118 consensus_2373#1 GCAACCA---CCACCGCGTCCCGCTCCACCACGACCAATGCAGG--GCCCTACGCCTACC 91 ** * * *** * * *** * *** * * ** * * * *** * * consensus_2373#0 CCACCCAGTTCGATGTCGGGTCGAACGGCGGATTTCACGGCGGTACTGCGGCGGCGGGCG 178 consensus_2373#1 AAACCTGCACCACCGGCG--TCGGATGC---ATTCGGTGACAGTA--GCGGCGGCGG-CA 143 *** * * ** *** * * *** * * *** ********** * consensus_2373#0 GCTTTGGGGAAGACGGGTTCGGTGCGTTTGGGGCGAAAGCGCCGTCGCACGCCATCGGTG 238 consensus_2373#1 GCTTTGC------CAACTTTGCCGACTTCGACAATAAGTGAATATCATCCG--AGTAATA 195 ****** * ** * * ** * ** ** ** * * consensus_2373#0 GGGGAGCGGCGGATCCGTTCGGATCGGGCGCTGCCGCCGAT-CCGTTCGGTGATCGGAAA 297 consensus_2373#1 GTAATACTAATAGAGACTAACAATTAACCGCGAAAGCTACTACTGATGGGCGGAGGCAAA 255 * * * ** *** ** * * * * ** * * *** consensus_2373#0 GGTAGCGGCAGT-GTAGCAGCAGAGCCCGCCAAAG-ATGAGTTCGGATGCG-ATCCGTTT 354 consensus_2373#1 GAAAGCGAAACTCGTAGTAGTACTCCCCCTTGGGTCGCGCGCTTGTGTGTGTATCGAGCT 315 * **** * * **** ** * *** * * * * ** * *** * consensus_2373#0 GCCATACTACATGCGCCGACCACTGCCGGTCAAGCACTGTCGCCTAGTCCCAGCAAATCC 414 consensus_2373#1 AATAC-TTGAATGCACCACACGTTTGCACACGAGCGCGCGCGCTCCATCTCCA-AAATGC 373 * * **** ** * * * * *** * *** ** * **** * consensus_2373#0 GTTGCCCCGCCACGTCCGGAATCGCCCAGCCCGGCACTGCCCGCCGAAGAAGGCAAAGCA 474 consensus_2373#1 ACAGCAAC-CCACTGCAAAACACTCGAAATCATAGTGAAATAGCCATTGAAAGCGTA--A 430 ** * **** * * * * * * *** *** ** * * consensus_2373#0 ACCACCACCGCGTCCCGCTCCACCACGGACCAATGCAGGGCCCTACGCCTACCAAACCTG 534 consensus_2373#1 ATTATAGTCGATTTAGGTGATGCAATAGTGCAA--CAGTGTTCTTCAC-TATCAATTACT 487 * * ** * * * * * *** *** * ** * * ** *** consensus_2373#0 CACCACCGGGCGTCGGATGCATTCGGTGACAGTAGCGGCGGCGGCAGCTTTGCCAACTTT 594 consensus_2373#1 GAGCGGCACGCTGCGAGTGCAGCAACACACACAAAAAGTATAAGAGGCTCTCTATATTTT 547 * * * ** ** **** *** * * * *** * * *** consensus_2373#0 G--CCGACTTCGACAATAAGAATCTCAAACCCGTTACCTCCCAAACACTGCAACAAGCGT 652 consensus_2373#1 GAGTTGAACGTATCTGTTA----------------------------------------- 566 * ** * * * consensus_2373#0 CGCCATCATCGTTCGCCTCAAGCGGGACCGCATTCGGTAGCAATCGT 699 consensus_2373#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||