These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [AATCCCCGAGGTTTAGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCTGGTCAAGCTGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGTTCGACATGGCGCCGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGTTCGCCGGCCGGCTTCAATGGGCCCGGGAACGGTAGCAATGGGCAGCAGCAGCGGATGCAGCCGCCGCTGCACGACTTTGAAGCGGACGACGATGGGCTGATACGGCCACTGCGGTACGATTTCCATCCCAACCGGGGCCGGGCATCGGTTTGAACAATGATGACCCTTGCNACTTTACACACACACCAATGAAACTCACACATCCAAAACACACACACACACACACACAAGCACAGTCACCAAACACCTGGCAGCACATGGNTGCGNGCGAAGGTCAATTAGTCGGCCGCGAATCATCATCTTCCTACTCTANCTACTTNCGTCANNNAACATCATCCCTTCACTATGCGAGCAATGC] [+] EMBL AL929655 [AATCCCCGAGGTTTAGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCTGGTCAAGCTGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGTTCGACATGGCGCCGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGTTCGCCGGCCGGCTTCAATGGGCCCGGGAACGGTAGCAATGGGCAGCAGCAGCGGATGCAGCCGCCGCTGCACGACTTTGAAGCGGACGACGATGGGCTGATACGGCCACTGCGGTACGATTTCCATCCCAACCGGGGCCGGGCATCGGTTTGAACAATGATGACCCTTGCNACTTTACACACACACCAATGAAACTCACACATCCAAAACACACACACACACACACACAAGCACAGTCACCAAACACCTGGCAGCACATGGNTGCGNGCGAAGGTCAATTAGTCGGCCGCGAATCATCATCTTCCTACTCTANCTACTTNCGTCANNNAACATCATCCCTTCACTATGCGAGCAATGC] consensusID : consensus_2374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [GCCAGAATNCCCACGAGGTTTATGCGGTTCGTGACGATAACACGGAGGACGAGAAGCGGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCGGTCAAGCTGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGGTTCGACATGGCGCCGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCGTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGGTTCGCCGGCCGGCTTCAATGGGCCCGGGAAACGGTAGCAATGGGCAGCAGACAGCGGATGCAGCCGCCGACTGCACGACTTTTGGAAGGCGGACGACCGATTGGCTGATACCGGGCAACTGCGGTACGCATTTTCCCATCGC] [+] EMBL BX469114 [GCCAGAATNCCCACGAGGTTTATGCGGTTCGTGACGATAACACGGAGGACGAGAAGCGGGACGAAGCGCAAGCCATACAGGCACTGCAAATAGCGGTCAAGCTGGACGGTGACATCATCACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCGCTCACCGTGTGCCACAACTGTCCGACCAAGGTTCGACATGGCGCCGGAGCCGAACGGCTGCTACATCGAGACGAACTATCGCGTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGGTTCGCCGGCCGGCTTCAATGGGCCCGGGAAACGGTAGCAATGGGCAGCAGACAGCGGATGCAGCCGCCGACTGCACGACTTTTGGAAGGCGGACGACCGATTGGCTGATACCGGGCAACTGCGGTACGCATTTTCCCATCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2374#0 -------------------------------------------AATCCCCGAGGTTTAGG 17 consensus_2374#1 GCCAGAATNCCCACGAGGTTTATGCGGTTCGTGACGATAACACGGAGGACGAGAAGCGGG 60 **** ** consensus_2374#0 ACGAAGCGCAAGCCATACAGGCACTGCAAATAGCTGGTCAAGCTGGACGGTGACATCATC 77 consensus_2374#1 ACGAAGCGCAAGCCATACAGGCACTGCAAATAGC-GGTCAAGCTGGACGGTGACATCATC 119 ********************************** ************************* consensus_2374#0 ACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCG 137 consensus_2374#1 ACCGGCAACACGGACAGCGTGGACGAGCGGTGCTACGATCGCATCTCCGTCATCAACCCG 179 ************************************************************ consensus_2374#0 CTCACCGTGTGCCACAACTGTCCGACCAAG-TTCGACATGGCGCCGGAGCCGAACGGCTG 196 consensus_2374#1 CTCACCGTGTGCCACAACTGTCCGACCAAGGTTCGACATGGCGCCGGAGCCGAACGGCTG 239 ****************************** ***************************** consensus_2374#0 CTACATCGAGACGAACTATCGC-TACCCGCTGATGGATTGCGAAATGACGCAGCTTCG-T 254 consensus_2374#1 CTACATCGAGACGAACTATCGCGTACCCGCTGATGGATTGCGAAATGACGCAGCTTCGGT 299 ********************** *********************************** * consensus_2374#0 TCGCCGGCCGGCTTCAATGGGCCCGGGAA-CGGTAGCAATGGGCAGCAG-CAGCGGATGC 312 consensus_2374#1 TCGCCGGCCGGCTTCAATGGGCCCGGGAAACGGTAGCAATGGGCAGCAGACAGCGGATGC 359 ***************************** ******************* ********** consensus_2374#0 AGCCGCCG-CTGCACGACTTT---GAAGCGGACGAC-GATGGGCTGATAC--GGCCACTG 365 consensus_2374#1 AGCCGCCGACTGCACGACTTTTGGAAGGCGGACGACCGATTGGCTGATACCGGGCAACTG 419 ******** ************ * ********* *** ********* *** **** consensus_2374#0 CGGTACGATTTCCATCCCAACCGGGGCCGGGCATCGGTTTGAACAATGATGACCCTTGCN 425 consensus_2374#1 CGGTACGCATTTTCCCATCGC--------------------------------------- 440 ******* ** * * consensus_2374#0 ACTTTACACACACACCAATGAAACTCACACATCCAAAACACACACACACACACACACAAG 485 consensus_2374#1 ------------------------------------------------------------ consensus_2374#0 CACAGTCACCAAACACCTGGCAGCACATGGNTGCGNGCGAAGGTCAATTAGTCGGCCGCG 545 consensus_2374#1 ------------------------------------------------------------ consensus_2374#0 AATCATCATCTTCCTACTCTANCTACTTNCGTCANNNAACATCATCCCTTCACTATGCGA 605 consensus_2374#1 ------------------------------------------------------------ consensus_2374#0 GCAATGC 612 consensus_2374#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||