These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [GTGACGTTTGTTGAGCTCATTCACTTAGAGTGCCTTTTTTGCCTGTTTTTTCACTACTGAAATTAAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTATACACACACAATAATAGTAGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAACCCCTCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGGGGGGAGGGATGTTTAGCTTAAAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTCCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAAGGCACACAGTGTGTGTGTGTGTGTGTTCGCAGATACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTATGTAATAATTAGAGTACGGCTAATAGAGTGTAATGGCTATGAGTTGTAGTTGCGTTGATGAGTATGCCAGCACAAGATACTTGTAATTGCTCGTTCCTAAAGCAAAGCAAAGGCAAAGGCTCAATCCACAATAGAGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGTATGGAGCGTGCTTAGAGACAGGATAAAAAATGACAGAAATGGACGAAAGGATCGTGTGTGTTTG] [+] EMBL BX607086 [GTGACGTTTGTTGAGCTCATTCACTTAGAGTGCCTTTTTTGCCTGTTTTTTCACTACTGAAATTAAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTATACACACACAATAATAGTAGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAACCCCTCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGGGGGGAGGGATGTTTAGCTTAAAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTCCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAAGGCACACAGTGTGTGTGTGTGTGTGTTCGCAGATACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTATGTAATAATTAGAGTACGGCTAATAGAGTGTAATGGCTATGAGTTGTAGTTGCGTTGATGAGTATGCCAGCACAAGATACTTGTAATTGCTCGTTCCTAAAGCAAAGCAAAGGCAAAGGCTCAATCCACAATAGAGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGTATGGAGCGTGCTTAGAGACAGGATAAAAAATGACAGAAATGGACGAAAGGATCGTGTGTGTTTG] consensusID : consensus_2377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [TCCCGAGGTTCTTTTTTGCCTGTTTTTTCACTACTGAAATTAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTACACACACAATAGTAGTAGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAATCCCCCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGAAGAGGGGGATGTTTAGCTTAGAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTTCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAAGGGCATACAATGTGTGTATGTGTGTTTGCAGATACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTGTATGTAATAATTAGAGTACGGTA] [+] EMBL AL929667 [TCCCGAGGTTCTTTTTTGCCTGTTTTTTCACTACTGAAATTAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTACACACACAATAGTAGTAGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAATCCCCCACTCAGTAGTAAGGTAGAAGAAGCTAAAAGAAGAGGGGGATGTTTAGCTTAGAAGCGCGCGAGTTATGGAATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTTCTCTTCACTCTTTTTCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCGAGCGTGTGTGAGCGTATGACACACAAGGGCATACAATGTGTGTATGTGTGTTTGCAGATACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTGTATGTAATAATTAGAGTACGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2377#0 GTGACGTTTGTTGAGCTCATTCACTTAGAGTGCCTTTTTTGCCTGTTTTTTCACTACTGA 60 consensus_2377#1 -----------------------TCCCGAGGTTCTTTTTTGCCTGTTTTTTCACTACTGA 37 *** *************************** consensus_2377#0 AATTAAACTATCGTCATGTTGTTGATAATAGTGTGTCAAGTATACACACACAATAATAGT 120 consensus_2377#1 AATTAA-CTATCGTCATGTTGTTGATAATAGTGTGTCAAGTA--CACACACAATAGTAGT 94 ****** *********************************** *********** **** consensus_2377#0 AGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAACCCCTCACTCAGTAGT 180 consensus_2377#1 AGTAGCATCGAATCACATACAAATCAATCACTCAATTTCAACAATCCCCCACTCAGTAGT 154 ******************************************** *** *********** consensus_2377#0 AAGGTAGAAGAAGCTAAAAGGGGGGAGGGATGTTTAGCTTAAAAGCGCGCGAGTTATGGA 240 consensus_2377#1 AAGGTAGAAGAAGCTAAAAGAAGAGGGGGATGTTTAGCTTAGAAGCGCGCGAGTTATGGA 214 ******************** * * *************** ****************** consensus_2377#0 ATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTT 300 consensus_2377#1 ATGCAATACATAGAGAACACGCGGACAGACGCGGACACGCCGGCATACTTTCAAACTCTT 274 ************************************************************ consensus_2377#0 CTCTTCACTCTTTTCCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCG 360 consensus_2377#1 CTCTTCACTCTTTTTCCGCTCCTTGATATCAATAAATTGTAGAACTAAATAGGGAAGGCG 334 ************** ********************************************* consensus_2377#0 AGCGTGTGTGAGCGTATGACACACAAGGCACACAGTGTGTGTGTGTGTGTGTTCGCAGAT 420 consensus_2377#1 AGCGTGTGTGAGCGTATGACACACAAGG-GCATACAATGTGTGTATGTGTGTTTGCAGAT 393 **************************** ** * ******* ******** ****** consensus_2377#0 ACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGT--ATGT 478 consensus_2377#1 ACTTAATGAAGTTAAACTATATGCTCTGATGCGTGCGTGCGTGCGTGTGTGTGTGTATGT 453 ****************************************************** **** consensus_2377#0 AATAATTAGAGTACGGCTAATAGAGTGTAATGGCTATGAGTTGTAGTTGCGTTGATGAGT 538 consensus_2377#1 AATAATTAGAGTACGGTA------------------------------------------ 471 **************** consensus_2377#0 ATGCCAGCACAAGATACTTGTAATTGCTCGTTCCTAAAGCAAAGCAAAGGCAAAGGCTCA 598 consensus_2377#1 ------------------------------------------------------------ consensus_2377#0 ATCCACAATAGAGGCAGAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGTATGGAGCGTGCT 658 consensus_2377#1 ------------------------------------------------------------ consensus_2377#0 TAGAGACAGGATAAAAAATGACAGAAATGGACGAAAGGATCGTGTGTGTTTG 710 consensus_2377#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||