cluster # 2387

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Anopheles gambiae
cluster # 2387 cluster # 2387 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2387#0 length = 656 sequences # 1

consensus_2387#1 length = 517 sequences # 1

consensusID : consensus_2387#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [CCGCGGACGCGTGGGTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCACCCCACTATAATCTGAAATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACACCTGTGCTGATCATTACAACTACTGCCGAGCAAAAGCTACTAAATGCTGCCAAATGAATCTGACAGCTGTCATCATCATTTTCACACTAAGAGAGACTATCCCTATCGACTGATCGTTCAGTTGTTGCTCACATTGACTGATCACGCTAATAGAATACATTCACCTCAGAACTAAGGATCGCCCGATTCTTACCAAACACTGCCAGCAATAGTATCTCAACTCATCTCAGAATCTCATCTCAACCCCGTACACTGCTCATAGTTTATACCGACTCTCGTACTGTCCACACCAAGGGGGGGGAATGAAAGAGGCATGGAAATAAACGGCCGACAATCGCGATCGCGTGTTATAGGCTTGTCGGCACTCTAGGAATAGTTTTCAGTCATAGCAGGTACTCCTTGTCTTAAGCGTACGTACGTACCTACTACTGGTTGTCTTCTAAATCTTCCTGTAAATATGAGACATTTGAAAAAGG]

[+] EMBL BM638165             [CCGCGGACGCGTGGGTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCACCCCACTATAATCTGAAATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACACCTGTGCTGATCATTACAACTACTGCCGAGCAAAAGCTACTAAATGCTGCCAAATGAATCTGACAGCTGTCATCATCATTTTCACACTAAGAGAGACTATCCCTATCGACTGATCGTTCAGTTGTTGCTCACATTGACTGATCACGCTAATAGAATACATTCACCTCAGAACTAAGGATCGCCCGATTCTTACCAAACACTGCCAGCAATAGTATCTCAACTCATCTCAGAATCTCATCTCAACCCCGTACACTGCTCATAGTTTATACCGACTCTCGTACTGTCCACACCAAGGGGGGGGAATGAAAGAGGCATGGAAATAAACGGCCGACAATCGCGATCGCGTGTTATAGGCTTGTCGGCACTCTAGGAATAGTTTTCAGTCATAGCAGGTACTCCTTGTCTTAAGCGTACGTACGTACCTACTACTGGTTGTCTTCTAAATCTTCCTGTAAATATGAGACATTTGAAAAAGG]




>consensus_2387#0
CCGCGGACGCGTGGGTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCT
GTTTCGATGCTCTTTCTTAATTCCCACCCCACTATAATCTGAAATCCTGTGTGAATCGGT
GGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACA
CCTGTGCTGATCATTACAACTACTGCCGAGCAAAAGCTACTAAATGCTGCCAAATGAATC
TGACAGCTGTCATCATCATTTTCACACTAAGAGAGACTATCCCTATCGACTGATCGTTCA
GTTGTTGCTCACATTGACTGATCACGCTAATAGAATACATTCACCTCAGAACTAAGGATC
GCCCGATTCTTACCAAACACTGCCAGCAATAGTATCTCAACTCATCTCAGAATCTCATCT
CAACCCCGTACACTGCTCATAGTTTATACCGACTCTCGTACTGTCCACACCAAGGGGGGG
GAATGAAAGAGGCATGGAAATAAACGGCCGACAATCGCGATCGCGTGTTATAGGCTTGTC
GGCACTCTAGGAATAGTTTTCAGTCATAGCAGGTACTCCTTGTCTTAAGCGTACGTACGT
ACCTACTACTGGTTGTCTTCTAAATCTTCCTGTAAATATGAGACATTTGAAAAAGG

consensusID : consensus_2387#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [GATCGCACGAGGTNTGGTTTCACTTCTTTTAACTAACTATTCTAGATTATTATTAATATTATTATGAGTATTTAGTAATCCGTTTTGGGGACGAACGGGGCTCATAGGGTGAACGGTACGGTCGGGTGCACAACACCACCTTCCCAACCCTTCCCGCATGTCTCGCTACGGTGTCTAGCAATTAGGCAAATTTGTACATAATGCATCGCGTAACCTCTTCCCCGATTTGATTGAACCTCCTCTCCAGCCCAGCGCAGAGCGAACGCTACGAAAGCAATACTGATGGAATATGCGAAATCTGCACTGGGGAAGTGATGTTGTACCGAGATTCACTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCAACCCACTATAATCTGAAATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACACCTGTGCTGATCATTACAA]

[+] EMBL AL929757             [GATCGCACGAGGTNTGGTTTCACTTCTTTTAACTAACTATTCTAGATTATTATTAATATTATTATGAGTATTTAGTAATCCGTTTTGGGGACGAACGGGGCTCATAGGGTGAACGGTACGGTCGGGTGCACAACACCACCTTCCCAACCCTTCCCGCATGTCTCGCTACGGTGTCTAGCAATTAGGCAAATTTGTACATAATGCATCGCGTAACCTCTTCCCCGATTTGATTGAACCTCCTCTCCAGCCCAGCGCAGAGCGAACGCTACGAAAGCAATACTGATGGAATATGCGAAATCTGCACTGGGGAAGTGATGTTGTACCGAGATTCACTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCAACCCACTATAATCTGAAATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATGGACACCTGTGCTGATCATTACAA]




>consensus_2387#1
GATCGCACGAGGTNTGGTTTCACTTCTTTTAACTAACTATTCTAGATTATTATTAATATT
ATTATGAGTATTTAGTAATCCGTTTTGGGGACGAACGGGGCTCATAGGGTGAACGGTACG
GTCGGGTGCACAACACCACCTTCCCAACCCTTCCCGCATGTCTCGCTACGGTGTCTAGCA
ATTAGGCAAATTTGTACATAATGCATCGCGTAACCTCTTCCCCGATTTGATTGAACCTCC
TCTCCAGCCCAGCGCAGAGCGAACGCTACGAAAGCAATACTGATGGAATATGCGAAATCT
GCACTGGGGAAGTGATGTTGTACCGAGATTCACTTCTACTGCTGCTCCACAAACCACAAA
CCGACGGGAATAAGCTCTGTTTCGATGCTCTTTCTTAATTCCCAACCCACTATAATCTGA
AATCCTGTGTGAATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAATGC
GATCGAACAGGATGGACACCTGTGCTGATCATTACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2387#0      CCGCGGACGCGTGGGTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAAGCTCT 60
consensus_2387#1      --------------------------------------------GATCGCACGAGGTNTG 16
                                                                  **  * *  * *    

consensus_2387#0      GTTTCGATGCTCTTTCTTAATTCCCACCCCACTATAATCTGAAATCCTGTGTGAATC-GG 119
consensus_2387#1      GTTTCACTTCTTTTAACTAACTATT-CTAGATTATTATTAATATTATTATGAGTATTTAG 75
                      *****  * ** **   *** *    *   * *** **    * *  * ** * **   *

consensus_2387#0      TGGAAAATT---AACGTAAATGTTATGAAAGAGGAGAACTGAATGCGATCGAACAGGATG 176
consensus_2387#1      TAATCCGTTTTGGGGACGAACGGGGCTCATAGGGTGAAC--GGTACGGTCGGGTGCACAA 133
                      *      **         ** *      *   ** ****    * ** ***         

consensus_2387#0      GACACCTGTGCTGATCATTACAACTACTGCCGA-GCAAAAGCTACTAAATGCTGCCAAAT 235
consensus_2387#1      CACCACCTTCCCAACCCTTCCCGCATGTCTCGCTACGGTGTCTAGCAATTAGGCAAATTT 193
                       **  *  * *  * * ** *  *   *  **   *     ***  ** *      *  *

consensus_2387#0      GAATCTGACAGCTGTCATCATCATTTTCACACTAAGAGAGACTATCCCTATCGACTGATC 295
consensus_2387#1      GTACATAATGCATCGCGTAACCTCTTCCCCGATTTGATTGAACCTCCTCTCCAGCCCAGC 253
                      * *  * *    *  * * * *  ** * *  *  **  **   ***    *  *  * *

consensus_2387#0      GTTCAGTTGTTGCT-CACATTGACTGATCACGCTA-ATAGAATACATTCACCTCAGAACT 353
consensus_2387#1      GCAGAGCGAACGCTACGAAAGCAATACTGATGGAATATGCGAAATCTGCACTGGGGAAGT 313
                      *   **     *** *  *   * *  * * *  * **   * *  * ***    *** *

consensus_2387#0      AAGGATCGCCCGATTCTTAC--CAAACACTGC--CAGCAATAGTATCTCAACTCATCTCA 409
consensus_2387#1      GATGTTGTACCGAGATTCACTTCTACTGCTGCTCCACAAACCACAAACCGACGGGAATAA 373
                       * * *   ****   * **  * *   ****  **  **    *   * **     * *

consensus_2387#0      GAATCTCATCTCAACCCCGTACACTGCTCATAGTTTA-TACCGACTCTCGTACTGTCCAC 468
consensus_2387#1      GC-TCTGTTTCGATGCTCTTTCTTAATTCCCAACCCACTATAATCTGAAATCCTGTGTGA 432
                      *  ***  *   *  * * * *     **  *    * **    **    * ****    

consensus_2387#0      ACCAAGGGGGGGG-AATGAAAGAGGCATGGAAATAAACGGCCGACAATCGCGATCGCGTG 527
consensus_2387#1      ATCGGTGGAAAATTAACGTAAATGTTATGAAAGAGGAGAACTGAA---TGCGATCGAACA 489
                      * *   **      ** * **  *  *** **    *   * **     *******    

consensus_2387#0      TTATAGGCTTGTCGGCACTCTAGGAATAGTTTTCAGTCATAGCAGGTACTCCTTGTCTTA 587
consensus_2387#1      GGATGGACACCTGTGCTGATCATTACAA-------------------------------- 517
                        ** * *   *  **     *  *  *                                

consensus_2387#0      AGCGTACGTACGTACCTACTACTGGTTGTCTTCTAAATCTTCCTGTAAATATGAGACATT 647
consensus_2387#1      ------------------------------------------------------------
                                                                                  

consensus_2387#0      TGAAAAAGG 656
consensus_2387#1      ---------