cluster # 2395

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Anopheles gambiae
cluster # 2395 cluster # 2395 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2395#0 length = 807 sequences # 1

consensus_2395#1 length = 628 sequences # 1

consensusID : consensus_2395#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 807
fasta sequence

                              [GCAAGAATTGCCCCGAGGTTTTGTTTACCTGTGAGTGCGTTCCGAATCNTGGTCTGACTGCTTTGTGCAGCACGCTGAACCAGCACTACTACCTGGCAAGCTGGCACTGCGACTGTGTGGTCAACGGGAAGAAGCTCCCTGTCCTGGCACCGGGCACTACAATGCGGAGTGGCAAATGGATCCTGAACCACAAACATAGTGGCCGAGTGCTGCCTGCCCTCTGTGCCAAACGGTCGCCCCGCACAACTGCCGTGTCGCCTAACNAAACGCCCCTTTCAAGCGACTCAGGAACCGGNAGCCCAACGGACACGGACCGGAGGCAACACGGAACTCTTTCCGCTCCTTGGCACGCCACACGCACGNCAACCCTCCGTGTACAAATTGATAACAACCCAGCCGCTCTGGCGGCCCTGAACGCGCCTCGCAATTGCAACGAATGGCGGCTGNGCCTTGCTTGTTTCCAAACCAGATCCAAGACAAACTTACCCCAAACAGGTTTCCGGCCTGGGTCACGGCACCCTGGCTATGGCCTGCCAACCCCCCTTGATCCCCAAGCAGGCCGCCACAAACCCCAATTCGGATAACCCGATNTAAACAGGTCTGNNGCAAAAAAGGTTNGGACCCGCACAACGCAAAGGACGGTAGAGGGTATGGACCGCCACTGGCCCGGACGCACATTTGAGGGTTAANGNGCAACAAACCTCAAGGTTTCCTAAGATCAACCAAAACCCCAAGGNCGCGAAACCCNTGTCCTACAACGCCCCAAACCTTAACTCCCNTTTAACACTCGGTTTACCCAAACACAAG]

[+] EMBL AL929827             [GCAAGAATTGCCCCGAGGTTTTGTTTACCTGTGAGTGCGTTCCGAATCNTGGTCTGACTGCTTTGTGCAGCACGCTGAACCAGCACTACTACCTGGCAAGCTGGCACTGCGACTGTGTGGTCAACGGGAAGAAGCTCCCTGTCCTGGCACCGGGCACTACAATGCGGAGTGGCAAATGGATCCTGAACCACAAACATAGTGGCCGAGTGCTGCCTGCCCTCTGTGCCAAACGGTCGCCCCGCACAACTGCCGTGTCGCCTAACNAAACGCCCCTTTCAAGCGACTCAGGAACCGGNAGCCCAACGGACACGGACCGGAGGCAACACGGAACTCTTTCCGCTCCTTGGCACGCCACACGCACGNCAACCCTCCGTGTACAAATTGATAACAACCCAGCCGCTCTGGCGGCCCTGAACGCGCCTCGCAATTGCAACGAATGGCGGCTGNGCCTTGCTTGTTTCCAAACCAGATCCAAGACAAACTTACCCCAAACAGGTTTCCGGCCTGGGTCACGGCACCCTGGCTATGGCCTGCCAACCCCCCTTGATCCCCAAGCAGGCCGCCACAAACCCCAATTCGGATAACCCGATNTAAACAGGTCTGNNGCAAAAAAGGTTNGGACCCGCACAACGCAAAGGACGGTAGAGGGTATGGACCGCCACTGGCCCGGACGCACATTTGAGGGTTAANGNGCAACAAACCTCAAGGTTTCCTAAGATCAACCAAAACCCCAAGGNCGCGAAACCCNTGTCCTACAACGCCCCAAACCTTAACTCCCNTTTAACACTCGGTTTACCCAAACACAAG]




>consensus_2395#0
GCAAGAATTGCCCCGAGGTTTTGTTTACCTGTGAGTGCGTTCCGAATCNTGGTCTGACTG
CTTTGTGCAGCACGCTGAACCAGCACTACTACCTGGCAAGCTGGCACTGCGACTGTGTGG
TCAACGGGAAGAAGCTCCCTGTCCTGGCACCGGGCACTACAATGCGGAGTGGCAAATGGA
TCCTGAACCACAAACATAGTGGCCGAGTGCTGCCTGCCCTCTGTGCCAAACGGTCGCCCC
GCACAACTGCCGTGTCGCCTAACNAAACGCCCCTTTCAAGCGACTCAGGAACCGGNAGCC
CAACGGACACGGACCGGAGGCAACACGGAACTCTTTCCGCTCCTTGGCACGCCACACGCA
CGNCAACCCTCCGTGTACAAATTGATAACAACCCAGCCGCTCTGGCGGCCCTGAACGCGC
CTCGCAATTGCAACGAATGGCGGCTGNGCCTTGCTTGTTTCCAAACCAGATCCAAGACAA
ACTTACCCCAAACAGGTTTCCGGCCTGGGTCACGGCACCCTGGCTATGGCCTGCCAACCC
CCCTTGATCCCCAAGCAGGCCGCCACAAACCCCAATTCGGATAACCCGATNTAAACAGGT
CTGNNGCAAAAAAGGTTNGGACCCGCACAACGCAAAGGACGGTAGAGGGTATGGACCGCC
ACTGGCCCGGACGCACATTTGAGGGTTAANGNGCAACAAACCTCAAGGTTTCCTAAGATC
AACCAAAACCCCAAGGNCGCGAAACCCNTGTCCTACAACGCCCCAAACCTTAACTCCCNT
TTAACACTCGGTTTACCCAAACACAAG

consensusID : consensus_2395#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CCGCGGACGCGTGGGTACACCGGCAAGCGGCACGCGATGGTGGTCAACGGGAAGAAGCTCCCGTCCGGCACCGGACACTACAATGCGGAGGGCAAATGGATCCGAACCACAAACATAGTGGCCGAGGTGCCGCCCTCTGGCCAAACGGTCGCCCCGACAACGCCGGTCGCTAAGAAACGCCCCTTTCAAGCGACTCAGAACGGAGCCAACGGAACGACCGGAGCAAAGAATCTTCGTCTGGAGCCACCGCCGCAACCTCCGGTACAATTGATAAACCCAGCGTTGGGCCCTGAGGCCTCGAATGCAACGAATGGGGTGGCAGCTGTTCCACCGCTCCAGCAACTAGCCAACGTTTCGCCCGTCACGGCGCCGGTAGGCGCAACCCCTGTCCCAACAGCGCCACAACCGATCGTAACGATTAACGTGGAGAGTGACGAAGAGGTGGTGCCAGCGGATGGTAGCAAACAGTCAGTACAACCAGCCACCGCGCAACCCACTACCCTACCGTCCAAAGGTGGCCCGGAAAGCGGCACCACGCTCGAGCAGGAGATTCGCAAAAAAGCAAGGGCTGGACTGTGTGGACGATACCGGCACGTTCTGCCTGATCTGCGAAACGTCCGTCACGTCG]

[+] EMBL BM651527             [CCGCGGACGCGTGGGTACACCGGCAAGCGGCACGCGATGGTGGTCAACGGGAAGAAGCTCCCGTCCGGCACCGGACACTACAATGCGGAGGGCAAATGGATCCGAACCACAAACATAGTGGCCGAGGTGCCGCCCTCTGGCCAAACGGTCGCCCCGACAACGCCGGTCGCTAAGAAACGCCCCTTTCAAGCGACTCAGAACGGAGCCAACGGAACGACCGGAGCAAAGAATCTTCGTCTGGAGCCACCGCCGCAACCTCCGGTACAATTGATAAACCCAGCGTTGGGCCCTGAGGCCTCGAATGCAACGAATGGGGTGGCAGCTGTTCCACCGCTCCAGCAACTAGCCAACGTTTCGCCCGTCACGGCGCCGGTAGGCGCAACCCCTGTCCCAACAGCGCCACAACCGATCGTAACGATTAACGTGGAGAGTGACGAAGAGGTGGTGCCAGCGGATGGTAGCAAACAGTCAGTACAACCAGCCACCGCGCAACCCACTACCCTACCGTCCAAAGGTGGCCCGGAAAGCGGCACCACGCTCGAGCAGGAGATTCGCAAAAAAGCAAGGGCTGGACTGTGTGGACGATACCGGCACGTTCTGCCTGATCTGCGAAACGTCCGTCACGTCG]




>consensus_2395#1
CCGCGGACGCGTGGGTACACCGGCAAGCGGCACGCGATGGTGGTCAACGGGAAGAAGCTC
CCGTCCGGCACCGGACACTACAATGCGGAGGGCAAATGGATCCGAACCACAAACATAGTG
GCCGAGGTGCCGCCCTCTGGCCAAACGGTCGCCCCGACAACGCCGGTCGCTAAGAAACGC
CCCTTTCAAGCGACTCAGAACGGAGCCAACGGAACGACCGGAGCAAAGAATCTTCGTCTG
GAGCCACCGCCGCAACCTCCGGTACAATTGATAAACCCAGCGTTGGGCCCTGAGGCCTCG
AATGCAACGAATGGGGTGGCAGCTGTTCCACCGCTCCAGCAACTAGCCAACGTTTCGCCC
GTCACGGCGCCGGTAGGCGCAACCCCTGTCCCAACAGCGCCACAACCGATCGTAACGATT
AACGTGGAGAGTGACGAAGAGGTGGTGCCAGCGGATGGTAGCAAACAGTCAGTACAACCA
GCCACCGCGCAACCCACTACCCTACCGTCCAAAGGTGGCCCGGAAAGCGGCACCACGCTC
GAGCAGGAGATTCGCAAAAAAGCAAGGGCTGGACTGTGTGGACGATACCGGCACGTTCTG
CCTGATCTGCGAAACGTCCGTCACGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2395#0      GCAAGAATTGCCCCGAGGTTTTGTTTACCTGTGAGTGCGTTCCGAATCNTGGTCTGACTG 60
consensus_2395#1      ------------------------------------------------------------
                                                                                  

consensus_2395#0      CTTTGTGCAGCACGCTGAACCAGCACTACTACCTGGCAAGCTGGCACTGCGACTGTGTGG 120
consensus_2395#1      -----------CCGCGGACGCGTGGGTACA--CCGGCAAGC-GGCAC-GCGATGGT--GG 43
                                  *** **  *     ***   * ******* ***** ****  **  **

consensus_2395#0      TCAACGGGAAGAAGCTCCCTGTCCTGGCACCGGGCACTACAATGCGGAGTGGCAAATGGA 180
consensus_2395#1      TCAACGGGAAGAAGCTCCC-GTCC-GGCACCGGACACTACAATGCGGAG-GGCAAATGGA 100
                      ******************* **** ******** *************** **********

consensus_2395#0      TCCTGAACCACAAACATAGTGGCCGAGTGCTGCCTGCCCTCTGTGCCAAACGGTCGCCCC 240
consensus_2395#1      TCC-GAACCACAAACATAGTGGCCGAGG--TGCC-GCCCTCTG-GCCAAACGGTCGCCCC 155
                      *** ***********************   **** ******** ****************

consensus_2395#0      GCACAACTGCCGTGTCGCCTAACNAAACGCCCCTTTCAAGCGACTCAGGAACCGGNAGCC 300
consensus_2395#1      G-ACAAC-GCCG-GTCGCTAA--GAAACGCCCCTTTCAAGCGACTCAGAA--CGGAG--C 206
                      * ***** **** *****  *   ************************ *  ***    *

consensus_2395#0      CAACGGACACGGACCGGAGGCAACACGGAACTCTTTCCGCTCCTTGGCACGCCACACGCA 360
consensus_2395#1      CAACGGA-ACG-ACCGGAGCAAA---GAATCTTCGTCTG---------GAGCCAC---CG 249
                      ******* *** *******  **   * * **   ** *           *****   * 

consensus_2395#0      CGNCAACCCTCCGTGTACAAATTGATAACAACCCAGCCGCTCTGGCGGCCCTGAACGCGC 420
consensus_2395#1      CCGCAACCTCCGGTACA---ATTGATAA--ACCCAG---CGTTG--GGCCCTGAG---GC 296
                      *  *****  * **  *   ********  ******   *  **  ********    **

consensus_2395#0      CTCGCAATTGCAACGAATGGCGGCTGNGCCTTGCTTGTTTCCAAACCAGATCCAAGACAA 480
consensus_2395#1      CTCGAA--TGCAACGAATGG--GGTGGCAGCTGTTC--CACCGCTCCAGCAACTAGCCAA 350
                      **** *  ************  * **     ** *     **   ****   * ** ***

consensus_2395#0      ACTTACCCCAAACAGGTTTCCGGCCTGGGTCACGGCACCCTGGCTATGGCCTGCCAACCC 540
consensus_2395#1      CGTTTCGCCCGTCACGGCGCCGGTAGGCGCAAC--CCCTGTCCCAACAGCGCCACAACCG 408
                        ** * **   ** *   ****   * *  **  * *  *  * *  **    ***** 

consensus_2395#0      CCCTTGATCCCCAA-GCAGGCCGCCACAAACCCCAATTCGGATAACCCGATNTAAACAGG 599
consensus_2395#1      ATCGTAACGATTAACGTGGAGAGTGACGAA---GAGGTGGTGCCAGCGGATGGTAGCAAA 465
                        * * *     ** *  *   *  ** **    *  * *    * * ***   * **  

consensus_2395#0      TCTGNNGCAAAAAAGGTTNGGACCCGCACAACGCAAAGGACGGTAGAGGGTATGGACCGC 659
consensus_2395#1      CAGTCAGTACAACCAGCCA----CCGCGCAACCCACT--ACCCTACCGTCCAAAGGTGGC 519
                            * * **   *       **** **** **    **  **  *   *  *   **

consensus_2395#0      CACTGGCCCGGACGCACATTTGAG-GGTTAANGNGCAACAAACCTCAAGGTTTCCTAAGA 718
consensus_2395#1      CCGGAAAGCGGCACCACGCTCGAGCAGGAGATTCGCAAAAAAGC--AAGGGCT-----GG 572
                      *       ***   ***  * ***  *   *   **** *** *  ****  *     * 

consensus_2395#0      TCAACCAAAACCCCAAGGNCGCGAAACCCNTGTCCTAC--AACGCCCCAAACCTTAACTC 776
consensus_2395#1      ACTGTGTGGACGATACCGGCACGTTCTGCCTGATCTGCGAAACGTCCGTCACGTCG---- 628
                       *       **   *  * * **     * **  ** *  **** **   ** *      

consensus_2395#0      CCNTTTAACACTCGGTTTACCCAAACACAAG 807
consensus_2395#1      -------------------------------