cluster # 2397

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Anopheles gambiae
cluster # 2397 cluster # 2397 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2397#0 length = 747 sequences # 1

consensus_2397#1 length = 688 sequences # 1

consensusID : consensus_2397#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence

                              [TTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAACCGTTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACCGCCGACGGTTACATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGACCATTTCCTACCGGTGCTGCTCGTGCACGGGTTGTTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGNACAACAGTCTCGCCTACCTGCTGGCCGACCAGGGGCACGACGTGTGGCTGGCCGATCTGCGCGGCAATCGGTACTGCCGGCGCCACACCAACCTATCACCGGACAGCCGCGAGTTCTGGGACTATACCTGGCACGAGATGGGCTACTACGATCTGCCCGCCACGATCGATCACGTCCTGTCCGTGACGGGGGCAAGGCGCCTCCACTACATCGGCTACTCGCAGGGTACGACCGTGTTCTTCGTGCTCGCCTCCACCCGGCCCGAATACAACGCCGAAAGTGGCCCGCATGTACGCCCTCTCGCCGGCCGTCTACGTCCAGCAGGTGCGCAGTCCCATCTTCCGCTGGCTGGCGGAAAACGGTCCCGCCGTCAAGTGCTTCCTGGACGCGGTCGGTATGTGGGCAGGTGCTGNCCCCACAACCGTGCCCAGTACGCACTGCAGCGGAACCT]

[+] EMBL BX628031             [TTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAACCGTTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACCGCCGACGGTTACATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGACCATTTCCTACCGGTGCTGCTCGTGCACGGGTTGTTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGNACAACAGTCTCGCCTACCTGCTGGCCGACCAGGGGCACGACGTGTGGCTGGCCGATCTGCGCGGCAATCGGTACTGCCGGCGCCACACCAACCTATCACCGGACAGCCGCGAGTTCTGGGACTATACCTGGCACGAGATGGGCTACTACGATCTGCCCGCCACGATCGATCACGTCCTGTCCGTGACGGGGGCAAGGCGCCTCCACTACATCGGCTACTCGCAGGGTACGACCGTGTTCTTCGTGCTCGCCTCCACCCGGCCCGAATACAACGCCGAAAGTGGCCCGCATGTACGCCCTCTCGCCGGCCGTCTACGTCCAGCAGGTGCGCAGTCCCATCTTCCGCTGGCTGGCGGAAAACGGTCCCGCCGTCAAGTGCTTCCTGGACGCGGTCGGTATGTGGGCAGGTGCTGNCCCCACAACCGTGCCCAGTACGCACTGCAGCGGAACCT]




>consensus_2397#0
TTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTT
CGGCGGTTATCCAACCGTTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGA
GCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACCGCCGACGGTTA
CATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGACCATTTCCTACCGGT
GCTGCTCGTGCACGGGTTGTTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGNACAA
CAGTCTCGCCTACCTGCTGGCCGACCAGGGGCACGACGTGTGGCTGGCCGATCTGCGCGG
CAATCGGTACTGCCGGCGCCACACCAACCTATCACCGGACAGCCGCGAGTTCTGGGACTA
TACCTGGCACGAGATGGGCTACTACGATCTGCCCGCCACGATCGATCACGTCCTGTCCGT
GACGGGGGCAAGGCGCCTCCACTACATCGGCTACTCGCAGGGTACGACCGTGTTCTTCGT
GCTCGCCTCCACCCGGCCCGAATACAACGCCGAAAGTGGCCCGCATGTACGCCCTCTCGC
CGGCCGTCTACGTCCAGCAGGTGCGCAGTCCCATCTTCCGCTGGCTGGCGGAAAACGGTC
CCGCCGTCAAGTGCTTCCTGGACGCGGTCGGTATGTGGGCAGGTGCTGNCCCCACAACCG
TGCCCAGTACGCACTGCAGCGGAACCT

consensusID : consensus_2397#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [AATCGCCGAGGNCAGTGGTTCGTTACGGAAATGCAGCAGCAGCAGCAGCCCAGTGCATCTGGCCTTACCGGTGGAGTGCAGTGTGCAGCAGTTGGTGGCCCTACATTTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAACCGTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACGGCGACGGTTACATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGAGCATTTCCTACCGGTGCTGCTCGTGCACGGGTTGTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGAACAACAGTCTCGCCTACCTGCTGGCCGACAGNGGCACGACGTGTGGCTGGCGCTGATCTGNTGCGGCAATCGGTACTGCGCGGCGCCCACACCAACCTAATCACCGGACAGGCCGCGACTTCTGNGGACCTAATACCCTGNGCACGAGAATGGNGCCTAACTACGAATCCTGNCCCCGGACCACGACTCTGATTCAACGTCCTGTCACCGGTGACGGNGNGCNNTAATGGGCCTCCACTACNTTCGGGGTANCTCNCCAGGGTAACGACCGGTCCTCGTGCTCGNCTCC]

[+] EMBL AL934558             [AATCGCCGAGGNCAGTGGTTCGTTACGGAAATGCAGCAGCAGCAGCAGCCCAGTGCATCTGGCCTTACCGGTGGAGTGCAGTGTGCAGCAGTTGGTGGCCCTACATTTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAACCGTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACGGCGACGGTTACATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGAGCATTTCCTACCGGTGCTGCTCGTGCACGGGTTGTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGAACAACAGTCTCGCCTACCTGCTGGCCGACAGNGGCACGACGTGTGGCTGGCGCTGATCTGNTGCGGCAATCGGTACTGCGCGGCGCCCACACCAACCTAATCACCGGACAGGCCGCGACTTCTGNGGACCTAATACCCTGNGCACGAGAATGGNGCCTAACTACGAATCCTGNCCCCGGACCACGACTCTGATTCAACGTCCTGTCACCGGTGACGGNGNGCNNTAATGGGCCTCCACTACNTTCGGGGTANCTCNCCAGGGTAACGACCGGTCCTCGTGCTCGNCTCC]




>consensus_2397#1
AATCGCCGAGGNCAGTGGTTCGTTACGGAAATGCAGCAGCAGCAGCAGCCCAGTGCATCT
GGCCTTACCGGTGGAGTGCAGTGTGCAGCAGTTGGTGGCCCTACATTTTGGTGCTTTGTA
CGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAA
CCGTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTA
TGGCTACCCGATCGAGCAGCACGAGATCACCACGGCGACGGTTACATCCTAACGTTGACG
AGAATCCCTCCGATGCGCACCAAATCCGAGCATTTCCTACCGGTGCTGCTCGTGCACGGG
TTGTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGAACAACAGTCTCGCCTACCTGC
TGGCCGACAGNGGCACGACGTGTGGCTGGCGCTGATCTGNTGCGGCAATCGGTACTGCGC
GGCGCCCACACCAACCTAATCACCGGACAGGCCGCGACTTCTGNGGACCTAATACCCTGN
GCACGAGAATGGNGCCTAACTACGAATCCTGNCCCCGGACCACGACTCTGATTCAACGTC
CTGTCACCGGTGACGGNGNGCNNTAATGGGCCTCCACTACNTTCGGGGTANCTCNCCAGG
GTAACGACCGGTCCTCGTGCTCGNCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2397#0      ------------------------------------------------------------
consensus_2397#1      AATCGCCGAGGNCAGTGGTTCGTTACGGAAATGCAGCAGCAGCAGCAGCCCAGTGCATCT 60
                                                                                  

consensus_2397#0      ----------------------------------------------TTTGGTGCTTTGTA 14
consensus_2397#1      GGCCTTACCGGTGGAGTGCAGTGTGCAGCAGTTGGTGGCCCTACATTTTGGTGCTTTGTA 120
                                                                    **************

consensus_2397#0      CGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAA 74
consensus_2397#1      CGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAA 180
                      ************************************************************

consensus_2397#0      CCGTTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGT 134
consensus_2397#1      CCGTTT-CTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGT 239
                      ****** *****************************************************

consensus_2397#0      ATGGCTACCCGATCGAGCAGCACGAGATCACCACCGCCGACGGTTACATCCTAACGTTGA 194
consensus_2397#1      ATGGCTACCCGATCGAGCAGCACGAGATCACCACGGC-GACGGTTACATCCTAACGTTGA 298
                      ********************************** ** **********************

consensus_2397#0      CGAGAATCCCTCCGATGCGCACCAAATCCGACCATTTCCTACCGGTGCTGCTCGTGCACG 254
consensus_2397#1      CGAGAATCCCTCCGATGCGCACCAAATCCGAGCATTTCCTACCGGTGCTGCTCGTGCACG 358
                      ******************************* ****************************

consensus_2397#0      GGTTGTTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGNACAACAGTCTCGCCTACC 314
consensus_2397#1      GGTTGTT-GCCAGCTCGGCCGATTTCCTCATCATCGGGCCGAACAACAGTCTCGCCTACC 417
                      ******* ********************************* ******************

consensus_2397#0      TGCTGGCCGACCAGGGGCACGACGTGTGGCTGGC--CGATCTGC-GCGGCAATCGGTACT 371
consensus_2397#1      TGCTGGCCGAC-AGNGGCACGACGTGTGGCTGGCGCTGATCTGNTGCGGCAATCGGTACT 476
                      *********** ** *******************   ******  ***************

consensus_2397#0      GC-CGGCGCC-ACACCAACCTA-TCACCGGACAG-CCGCGAGTTCTGGG-----ACTATA 422
consensus_2397#1      GCGCGGCGCCCACACCAACCTAATCACCGGACAGGCCGCGACTTCTGNGGACCTAATACC 536
                      ** ******* *********** *********** ****** ***** *     * **  

consensus_2397#0      CCTGGCACGAGATGGGCT----ACTACGA--TCTGCCC----GCCACGATC--GATC--A 468
consensus_2397#1      CTGNGCACGAGAATGGNGCCTAACTACGAATCCTGNCCCCGGACCACGACTCTGATTCAA 596
                      *   ********  **      *******   *** **     ******    ***   *

consensus_2397#0      CGTCCTGTCC---GTGACGGGGG----CAAGGCGCCTCCACTACATC---GGCTACTCGC 518
consensus_2397#1      CGTCCTGTCACCGGTGACGGNGNGCNNTAATGGGCCTCCACTACNTTCGGGGTANCTCNC 656
                      *********    ******* *      ** * *********** *    **   *** *

consensus_2397#0      -AGGGTA-CGACCGTGTTCTTCGTGCTCGCCTCCACCCGGCCCGAATACAACGCCGAAAG 576
consensus_2397#1      CAGGGTAACGACCGG--TCCTCGTGCTCGNCTCC-------------------------- 688
                       ****** ******   ** ********* ****                          

consensus_2397#0      TGGCCCGCATGTACGCCCTCTCGCCGGCCGTCTACGTCCAGCAGGTGCGCAGTCCCATCT 636
consensus_2397#1      ------------------------------------------------------------
                                                                                  

consensus_2397#0      TCCGCTGGCTGGCGGAAAACGGTCCCGCCGTCAAGTGCTTCCTGGACGCGGTCGGTATGT 696
consensus_2397#1      ------------------------------------------------------------
                                                                                  

consensus_2397#0      GGGCAGGTGCTGNCCCCACAACCGTGCCCAGTACGCACTGCAGCGGAACCT 747
consensus_2397#1      ---------------------------------------------------