These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [TTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAACCGTTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACCGCCGACGGTTACATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGACCATTTCCTACCGGTGCTGCTCGTGCACGGGTTGTTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGNACAACAGTCTCGCCTACCTGCTGGCCGACCAGGGGCACGACGTGTGGCTGGCCGATCTGCGCGGCAATCGGTACTGCCGGCGCCACACCAACCTATCACCGGACAGCCGCGAGTTCTGGGACTATACCTGGCACGAGATGGGCTACTACGATCTGCCCGCCACGATCGATCACGTCCTGTCCGTGACGGGGGCAAGGCGCCTCCACTACATCGGCTACTCGCAGGGTACGACCGTGTTCTTCGTGCTCGCCTCCACCCGGCCCGAATACAACGCCGAAAGTGGCCCGCATGTACGCCCTCTCGCCGGCCGTCTACGTCCAGCAGGTGCGCAGTCCCATCTTCCGCTGGCTGGCGGAAAACGGTCCCGCCGTCAAGTGCTTCCTGGACGCGGTCGGTATGTGGGCAGGTGCTGNCCCCACAACCGTGCCCAGTACGCACTGCAGCGGAACCT] [+] EMBL BX628031 [TTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAACCGTTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACCGCCGACGGTTACATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGACCATTTCCTACCGGTGCTGCTCGTGCACGGGTTGTTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGNACAACAGTCTCGCCTACCTGCTGGCCGACCAGGGGCACGACGTGTGGCTGGCCGATCTGCGCGGCAATCGGTACTGCCGGCGCCACACCAACCTATCACCGGACAGCCGCGAGTTCTGGGACTATACCTGGCACGAGATGGGCTACTACGATCTGCCCGCCACGATCGATCACGTCCTGTCCGTGACGGGGGCAAGGCGCCTCCACTACATCGGCTACTCGCAGGGTACGACCGTGTTCTTCGTGCTCGCCTCCACCCGGCCCGAATACAACGCCGAAAGTGGCCCGCATGTACGCCCTCTCGCCGGCCGTCTACGTCCAGCAGGTGCGCAGTCCCATCTTCCGCTGGCTGGCGGAAAACGGTCCCGCCGTCAAGTGCTTCCTGGACGCGGTCGGTATGTGGGCAGGTGCTGNCCCCACAACCGTGCCCAGTACGCACTGCAGCGGAACCT] consensusID : consensus_2397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [AATCGCCGAGGNCAGTGGTTCGTTACGGAAATGCAGCAGCAGCAGCAGCCCAGTGCATCTGGCCTTACCGGTGGAGTGCAGTGTGCAGCAGTTGGTGGCCCTACATTTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAACCGTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACGGCGACGGTTACATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGAGCATTTCCTACCGGTGCTGCTCGTGCACGGGTTGTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGAACAACAGTCTCGCCTACCTGCTGGCCGACAGNGGCACGACGTGTGGCTGGCGCTGATCTGNTGCGGCAATCGGTACTGCGCGGCGCCCACACCAACCTAATCACCGGACAGGCCGCGACTTCTGNGGACCTAATACCCTGNGCACGAGAATGGNGCCTAACTACGAATCCTGNCCCCGGACCACGACTCTGATTCAACGTCCTGTCACCGGTGACGGNGNGCNNTAATGGGCCTCCACTACNTTCGGGGTANCTCNCCAGGGTAACGACCGGTCCTCGTGCTCGNCTCC] [+] EMBL AL934558 [AATCGCCGAGGNCAGTGGTTCGTTACGGAAATGCAGCAGCAGCAGCAGCCCAGTGCATCTGGCCTTACCGGTGGAGTGCAGTGTGCAGCAGTTGGTGGCCCTACATTTTGGTGCTTTGTACGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAACCGTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGTATGGCTACCCGATCGAGCAGCACGAGATCACCACGGCGACGGTTACATCCTAACGTTGACGAGAATCCCTCCGATGCGCACCAAATCCGAGCATTTCCTACCGGTGCTGCTCGTGCACGGGTTGTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGAACAACAGTCTCGCCTACCTGCTGGCCGACAGNGGCACGACGTGTGGCTGGCGCTGATCTGNTGCGGCAATCGGTACTGCGCGGCGCCCACACCAACCTAATCACCGGACAGGCCGCGACTTCTGNGGACCTAATACCCTGNGCACGAGAATGGNGCCTAACTACGAATCCTGNCCCCGGACCACGACTCTGATTCAACGTCCTGTCACCGGTGACGGNGNGCNNTAATGGGCCTCCACTACNTTCGGGGTANCTCNCCAGGGTAACGACCGGTCCTCGTGCTCGNCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2397#0 ------------------------------------------------------------ consensus_2397#1 AATCGCCGAGGNCAGTGGTTCGTTACGGAAATGCAGCAGCAGCAGCAGCCCAGTGCATCT 60 consensus_2397#0 ----------------------------------------------TTTGGTGCTTTGTA 14 consensus_2397#1 GGCCTTACCGGTGGAGTGCAGTGTGCAGCAGTTGGTGGCCCTACATTTTGGTGCTTTGTA 120 ************** consensus_2397#0 CGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAA 74 consensus_2397#1 CGTTGACCCTTCCGCTGAGGGTAGTGGCACGATCGAGTGATGCGTTCGGCGGTTATCCAA 180 ************************************************************ consensus_2397#0 CCGTTTTCTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGT 134 consensus_2397#1 CCGTTT-CTCAATTGACGAAGAAGACGGTATGCTGGAAACGTCTGAGCTGATCCGTAAGT 239 ****** ***************************************************** consensus_2397#0 ATGGCTACCCGATCGAGCAGCACGAGATCACCACCGCCGACGGTTACATCCTAACGTTGA 194 consensus_2397#1 ATGGCTACCCGATCGAGCAGCACGAGATCACCACGGC-GACGGTTACATCCTAACGTTGA 298 ********************************** ** ********************** consensus_2397#0 CGAGAATCCCTCCGATGCGCACCAAATCCGACCATTTCCTACCGGTGCTGCTCGTGCACG 254 consensus_2397#1 CGAGAATCCCTCCGATGCGCACCAAATCCGAGCATTTCCTACCGGTGCTGCTCGTGCACG 358 ******************************* **************************** consensus_2397#0 GGTTGTTTGCCAGCTCGGCCGATTTCCTCATCATCGGGCCGNACAACAGTCTCGCCTACC 314 consensus_2397#1 GGTTGTT-GCCAGCTCGGCCGATTTCCTCATCATCGGGCCGAACAACAGTCTCGCCTACC 417 ******* ********************************* ****************** consensus_2397#0 TGCTGGCCGACCAGGGGCACGACGTGTGGCTGGC--CGATCTGC-GCGGCAATCGGTACT 371 consensus_2397#1 TGCTGGCCGAC-AGNGGCACGACGTGTGGCTGGCGCTGATCTGNTGCGGCAATCGGTACT 476 *********** ** ******************* ****** *************** consensus_2397#0 GC-CGGCGCC-ACACCAACCTA-TCACCGGACAG-CCGCGAGTTCTGGG-----ACTATA 422 consensus_2397#1 GCGCGGCGCCCACACCAACCTAATCACCGGACAGGCCGCGACTTCTGNGGACCTAATACC 536 ** ******* *********** *********** ****** ***** * * ** consensus_2397#0 CCTGGCACGAGATGGGCT----ACTACGA--TCTGCCC----GCCACGATC--GATC--A 468 consensus_2397#1 CTGNGCACGAGAATGGNGCCTAACTACGAATCCTGNCCCCGGACCACGACTCTGATTCAA 596 * ******** ** ******* *** ** ****** *** * consensus_2397#0 CGTCCTGTCC---GTGACGGGGG----CAAGGCGCCTCCACTACATC---GGCTACTCGC 518 consensus_2397#1 CGTCCTGTCACCGGTGACGGNGNGCNNTAATGGGCCTCCACTACNTTCGGGGTANCTCNC 656 ********* ******* * ** * *********** * ** *** * consensus_2397#0 -AGGGTA-CGACCGTGTTCTTCGTGCTCGCCTCCACCCGGCCCGAATACAACGCCGAAAG 576 consensus_2397#1 CAGGGTAACGACCGG--TCCTCGTGCTCGNCTCC-------------------------- 688 ****** ****** ** ********* **** consensus_2397#0 TGGCCCGCATGTACGCCCTCTCGCCGGCCGTCTACGTCCAGCAGGTGCGCAGTCCCATCT 636 consensus_2397#1 ------------------------------------------------------------ consensus_2397#0 TCCGCTGGCTGGCGGAAAACGGTCCCGCCGTCAAGTGCTTCCTGGACGCGGTCGGTATGT 696 consensus_2397#1 ------------------------------------------------------------ consensus_2397#0 GGGCAGGTGCTGNCCCCACAACCGTGCCCAGTACGCACTGCAGCGGAACCT 747 consensus_2397#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||