These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 964 fasta sequence [CTGGTGCTCTGTGTGTGTCCATAGGAAAAAAGTGGTCATAAATTAGTGCATTTTGTGCGGCCTATTTCTCCAGTATCTTACTCCGGACATTTTAATTGTTTGTGACTAAAACTTAGCAAAAACACGAAAAGTAATTGCTACCATGGCTGAGAAACCAAAGCGTCCTCTATCAGCGTACATGCTGTGGCTGAATTCGGCCCGCGAACAGATCAAGAAGGAGAACCCCGGAATTAAAGTGACAGAAATCGCCAAAAAGGGCGGAGAGCTGTGGAGAGGAATGAAGGATAAGTCGGAGTGGGAATACAAGGCGGCCAAGATGAAGGATGAGTACAACAAACAGATGCAAGACTTCGAGCGAAACGGAGGAAGCAAGGACGCCGGAACCAAGAAAAAGAAAGGTGCAAAGAAAGTTGTCAAAAAGAGCAAAAAGAAGGATTCGGAGGATGAAGATGACGAGTCTGGAGATGAGAGCGACTGAACTAATCACTAACCTTAAAATAATTATTTTTAATTTATTGTGTAAATGCTTCGGGGCCTTACTTCAACTACAAAACCACAGCCATCTCTTTCTCTCCCCCTGTCTTACACGCCGGAAACAGAACAGCCAACGCACTACTTGAGGACAGTCCTCGCTGTCCCCAGTCCCAGTATTCCTGAATACTGACCCTGCTACGTACATCGTACTAGTAAAATAACCCTCTAAAACCACACCCCTCCCGGCAACCCCCCGTCAGTATAATGAAAGGCTTTCCGACAGTTTTGATAAACCGTCAAAAAGATTCCTTCTTCATCAAAACTACTACCCTAATACTGCTACTACTGTTCACTAACCAAAAAAGATCTATCAACTTGCCACCGCGTCACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACGTAAAATGACAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTG] [+] EMBL CNS09LVB [CTGGTGCTCTGTGTGTGTCCATAGGAAAAAAGTGGTCATAAATTAGTGCATTTTGTGCGGCCTATTTCTCCAGTATCTTACTCCGGACATTTTAATTGTTTGTGACTAAAACTTAGCAAAAACACGAAAAGTAATTGCTACCATGGCTGAGAAACCAAAGCGTCCTCTATCAGCGTACATGCTGTGGCTGAATTCGGCCCGCGAACAGATCAAGAAGGAGAACCCCGGAATTAAAGTGACAGAAATCGCCAAAAAGGGCGGAGAGCTGTGGAGAGGAATGAAGGATAAGTCGGAGTGGGAATACAAGGCGGCCAAGATGAAGGATGAGTACAACAAACAGATGCAAGACTTCGAGCGAAACGGAGGAAGCAAGGACGCCGGAACCAAGAAAAAGAAAGGTGCAAAGAAAGTTGTCAAAAAGAGCAAAAAGAAGGATTCGGAGGATGAAGATGACGAGTCTGGAGATGAGAGCGACTGAACTAATCACTAACCTTAAAATAATTATTTTTAATTTATTGTGTAAATGCTTCGGGGCCTTACTTCAACTACAAAACCACAGCCATCTCTTTCTCTCCCCCTGTCTTACACGCCGGAAACAGAACAGCCAACGCACTACTTGAGGACAGTCCTCGCTGTCCCCAGTCCCAGTATTCCTGAATACTGACCCTGCTACGTACATCGTACTAGTAAAATAACCCTCTAAAACCACACCCCTCCCGGCAACCCCCCGTCAGTATAATGAAAGGCTTTCCGACAGTTTTGATAAACCGTCAAAAAGATTCCTTCTTCATCAAAACTACTACCCTAATACTGCTACTACTGTTCACTAACCAAAAAAGATCTATCAACTTGCCACCGCGTCACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACGTAAAATGACAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTG] consensusID : consensus_240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGGAGTTACATCGGTGAAGTTGACCACAGCTAGACTCTGCAAGCACACTGTGTTCTGCACTCTTTCGCCCACAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAGCTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAGGTATGGCGTGTGGAGAACTTCCAGCCGGTCGTCATCCCGAAGGCAGAGCATGGCAAATTCTACACCGGTGATTCGTACATCGTGATGAACACGAAGGAGGACAAAAAGAAGGTCAAGACGCACGACATCCACTTCTGGCTCGGCACGAAAACTACCCAGGATGAGGCCGGTTCGGCCGCGATCCTGTCCGTGCAGCTCGATGATCTGTTGGGCGGTTTGCCGGTACAGCACCGGGAAGTGGAGGGCACCGAGTCGGACCTTTTCCTCAGCTACTTCAAGGGTGCTGTCCGCTATCTGGAGGGTGGCGTTGCCAGCGGCTTCAAGCACGTAACCACCAACGATCCCGGTGCGAAGCGGCTGTTCCACATCAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTATCGGCCATGAACAAGGGCGACTGCTTC] [+] EMBL BM635277 [CCGCCCACGCGTCCGCCCACGCGTCCGCGGAGTTACATCGGTGAAGTTGACCACAGCTAGACTCTGCAAGCACACTGTGTTCTGCACTCTTTCGCCCACAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAGCTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAGGTATGGCGTGTGGAGAACTTCCAGCCGGTCGTCATCCCGAAGGCAGAGCATGGCAAATTCTACACCGGTGATTCGTACATCGTGATGAACACGAAGGAGGACAAAAAGAAGGTCAAGACGCACGACATCCACTTCTGGCTCGGCACGAAAACTACCCAGGATGAGGCCGGTTCGGCCGCGATCCTGTCCGTGCAGCTCGATGATCTGTTGGGCGGTTTGCCGGTACAGCACCGGGAAGTGGAGGGCACCGAGTCGGACCTTTTCCTCAGCTACTTCAAGGGTGCTGTCCGCTATCTGGAGGGTGGCGTTGCCAGCGGCTTCAAGCACGTAACCACCAACGATCCCGGTGCGAAGCGGCTGTTCCACATCAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTATCGGCCATGAACAAGGGCGACTGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_240#0 CTGGTGCTCTGTGTGTGTCCATAGGAAAAAAGTGGTCATAAATTAGTGCATTTTGTGCGG 60 consensus_240#1 ---------------------------------------------CCGCCCACGCGTCCG 15 ** * * consensus_240#0 CCTATTTCTCCAGTATCTTACTCCGGACATTTTAATTGTTTGTGACTAAAACTTAGCAAA 120 consensus_240#1 CCCACGCGTCCGCGGAGTTACATCGG----TGAAGTTGACCACAGCTAGA-CTCTGCAAG 70 ** * *** **** *** * * *** *** * ** **** consensus_240#0 AACACGAAAAGTAATTGCTACCATGGCTGAGAAACCAAAGCGTCCTCT-ATCAGCGTACA 179 consensus_240#1 CACACTG--TGTTCTGCACTCTTTCGCCCACAGAATGAATCGTTTGCTCGTCAGTGCACT 128 **** ** * * * ** * * * ** *** ** **** * ** consensus_240#0 TGCTGTGGCTGAATTCGGCCCGCGAACAGATCAAGAAGGAGAACCCCGGAATTAAAGTGA 239 consensus_240#1 TTTGGTGAC-GGTTTCGGTTGCC---CTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGA 184 * *** * * ***** * * ** * * * * * * ** consensus_240#0 CAGAAATCGCCAAAAAGGGCGGAGAGCTGTGGAGAGGAATGAAGGATAAGTCGGAGTGGG 299 consensus_240#1 -ACAAGAAGCTGAACATTCCCGCATTCAACAATGCGGGAAAAACG----GTCGGCGTTGA 239 * ** ** ** * * * * * ** * ** * ***** ** * consensus_240#0 AATACAAGGCGGCCAAGATGAAGGATGAGTA--CAACAAACAGATGCAAGACTTCGAGCG 357 consensus_240#1 GGTATGGCGTGTGGAGAACTTCCAGCCGGTCGTCATCCCGAAGGCAGAGCATGGCAAATT 299 ** * * * * ** ** * ** * * * * consensus_240#0 AAACGGAGGAAGCAAGGACGCCGGAACCAAGAAAAAGAAAGGTGCAAAGAAAGTTGTCAA 417 consensus_240#1 CTACACCGGTGATTCGTACATCGTGATGAACACGAAGGAGGACAAAAAGAAGG---TCAA 356 ** ** * ** ** * ** * *** * * ****** * **** consensus_240#0 AAAGAGCAAAAAGAAGGATTCGGAGGATGAAGATGACGAGTCTGGAGATGAGAGCGACTG 477 consensus_240#1 GACGCACGACATCCACT-TCTGGCTCGGCACGAAAACTA--CCCAGGATGAGGCCGGTT- 412 * * * * * * * ** * ** ** * * ****** ** * consensus_240#0 AACTAATCACTAACCTTAAAATAATTATTTTTAATTTATTGTGTAAATGCTTCGGGGCCT 537 consensus_240#1 ---CGGCCGCGATCCTGTCCGTGCAGCTCGATGATCTGTTGGGCGGTT-TGCCGGTACAG 468 * * * *** * * * ** * *** * * *** * consensus_240#0 TACTTC-AACTACAAAACCACAGCCATCTCTTTCTCTCCCCCTGTCTTACACGCCGGAAA 596 consensus_240#1 CACCGGGAAGTGGAGGGCACCGAGTCGGACCTTTTCCTCAGCTACTTCAAGGGTGCTGTC 528 ** ** * * * * * ** ** * ** * * * consensus_240#0 CAGAACAGCCAACGCACTACTTGAGGACAGTCCTCGC-TGTCCCCAGTCCCAGTATTCCT 655 consensus_240#1 CGCTATCTGGAGGGTGGCGTTGCCAGCGGCTTCAAGCACGTAACCACCAACGATCCCGGT 588 * * * * * * * * ** ** *** * * * consensus_240#0 GAATACTGACCCTGCTACGTACATCGTACTAGTAAAATAACCCTCTAAAACCACACCCCT 715 consensus_240#1 GCGAAGCGGCTGTTCCACATCAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTG 648 * * * * * * ** * * **** * ** ** * ** * * * consensus_240#0 CCCGGCAACCCCCCGTCAGTATAATGAAAGGCTTTCCGACAGTTTTGATAAACCGTCAAA 775 consensus_240#1 GCCG--TATCGGCCATGAACAAGGGCGACTGCTTC------------------------- 681 *** * * ** * * * * **** consensus_240#0 AAGATTCCTTCTTCATCAAAACTACTACCCTAATACTGCTACTACTGTTCACTAACCAAA 835 consensus_240#1 ------------------------------------------------------------ consensus_240#0 AAAGATCTATCAACTTGCCACCGCGTCACACACAACTTTACACAAAATTGAAATGAAAAC 895 consensus_240#1 ------------------------------------------------------------ consensus_240#0 GAACTAAAAAAACGTAAAATGACAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG 955 consensus_240#1 ------------------------------------------------------------ consensus_240#0 CCACATGTG 964 consensus_240#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||