These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCCACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGCTTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAAACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGTGTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGCAATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACAACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGGGAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAATTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACNAT] [+] EMBL BX621550 [ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCCACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGCTTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAAACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGTGTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGCAATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACAACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGGGAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAATTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACNAT] consensusID : consensus_2404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [CCGCCCACGCGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTTACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTTTGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGCGAGACAATTCAACAATGTACAAAATGTTGCATATCA] [+] EMBL BM596855 [CCGCCCACGCGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTTACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTTTGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGCGAGACAATTCAACAATGTACAAAATGTTGCATATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2404#0 ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCC 60 consensus_2404#1 ------------------------------------------------------------ consensus_2404#0 ACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGC 120 consensus_2404#1 ------------------------------------------------------------ consensus_2404#0 TTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAA 180 consensus_2404#1 ------------------------------------------------------------ consensus_2404#0 ACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGT 240 consensus_2404#1 ------------------------------------------------------------ consensus_2404#0 GTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGC 300 consensus_2404#1 ------------------------------------------------------------ consensus_2404#0 AATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACA 360 consensus_2404#1 ------------------------------------------------------------ consensus_2404#0 ACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGG 420 consensus_2404#1 ------------------------------------------------------------ consensus_2404#0 GAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAA 480 consensus_2404#1 ---------------------------------------------------CCGCCCACG 9 ** * consensus_2404#0 TTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAA 540 consensus_2404#1 ----CGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAA 65 * ****** ** **************************************** consensus_2404#0 GTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAA 600 consensus_2404#1 GTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAA 125 ********************************************************* ** consensus_2404#0 CCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGAT 660 consensus_2404#1 CCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGAT 185 ************************************************************ consensus_2404#0 ATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCT 720 consensus_2404#1 ATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCT 245 ************************************************************ consensus_2404#0 ATATTTACNAT------------------------------------------------- 731 consensus_2404#1 ATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTT 305 ******** ** consensus_2404#0 ------------------------------------------------------------ consensus_2404#1 ACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTT 365 consensus_2404#0 ------------------------------------------------------------ consensus_2404#1 TGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGC 425 consensus_2404#0 ------------------------------------ consensus_2404#1 GAGACAATTCAACAATGTACAAAATGTTGCATATCA 461 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||