Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2404 cluster # 2404       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2404#0 length = 731 sequences # 1  
consensus_2404#1 length = 461 sequences # 1  

consensusID : consensus_2404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence
                              [ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCCACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGCTTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAAACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGTGTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGCAATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACAACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGGGAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAATTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACNAT]

[+] EMBL BX621550             [ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCCACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGCTTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAAACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGTGTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGCAATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACAACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGGGAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAATTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACNAT]


>consensus_2404#0 ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCC ACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGC TTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAA ACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGT GTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGC AATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACA ACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGG GAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAA TTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAA GTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAA CCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGAT ATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCT ATATTTACNAT



consensusID : consensus_2404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence
                              [CCGCCCACGCGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTTACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTTTGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGCGAGACAATTCAACAATGTACAAAATGTTGCATATCA]

[+] EMBL BM596855             [CCGCCCACGCGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTTACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTTTGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGCGAGACAATTCAACAATGTACAAAATGTTGCATATCA]


>consensus_2404#1 CCGCCCACGCGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTG CTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCA AACAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATT TTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATA TATCTATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACAC TGTTTACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCC GTGTTTGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCG AGAGCGAGACAATTCAACAATGTACAAAATGTTGCATATCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2404#0      ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCC 60
consensus_2404#1      ------------------------------------------------------------
                                                                                  

consensus_2404#0      ACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGC 120
consensus_2404#1      ------------------------------------------------------------
                                                                                  

consensus_2404#0      TTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAA 180
consensus_2404#1      ------------------------------------------------------------
                                                                                  

consensus_2404#0      ACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGT 240
consensus_2404#1      ------------------------------------------------------------
                                                                                  

consensus_2404#0      GTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGC 300
consensus_2404#1      ------------------------------------------------------------
                                                                                  

consensus_2404#0      AATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACA 360
consensus_2404#1      ------------------------------------------------------------
                                                                                  

consensus_2404#0      ACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGG 420
consensus_2404#1      ------------------------------------------------------------
                                                                                  

consensus_2404#0      GAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAA 480
consensus_2404#1      ---------------------------------------------------CCGCCCACG 9
                                                                           **  *  

consensus_2404#0      TTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAA 540
consensus_2404#1      ----CGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAA 65
                          *     ****** ** ****************************************

consensus_2404#0      GTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAA 600
consensus_2404#1      GTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAA 125
                      ********************************************************* **

consensus_2404#0      CCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGAT 660
consensus_2404#1      CCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGAT 185
                      ************************************************************

consensus_2404#0      ATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCT 720
consensus_2404#1      ATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCT 245
                      ************************************************************

consensus_2404#0      ATATTTACNAT------------------------------------------------- 731
consensus_2404#1      ATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTT 305
                      ******** **                                                 

consensus_2404#0      ------------------------------------------------------------
consensus_2404#1      ACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTT 365
                                                                                  

consensus_2404#0      ------------------------------------------------------------
consensus_2404#1      TGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGC 425
                                                                                  

consensus_2404#0      ------------------------------------
consensus_2404#1      GAGACAATTCAACAATGTACAAAATGTTGCATATCA 461
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)