These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [GATCGCCCGAGTTACTCATCGGACGCTCGAGATGAACCGCAACAACTATCTGAATCCGCTCGGTTCCGGCGGTAATGGGGGCCCGGTAGTGCCCGGCACGCTCACACTCGGCCGCATCAAATCCGAGCGCAATAACTACATCAACGGGTACGGGGATACGCTGAATCGAAACAATTTAACGATGGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCTGNACCACAACAACGCCAACCACGGGTCGATACAAGCGTGAACCTGAACCAGGGCCACCATCATCACCCGATGCACAACGGGGGCCCAGGTGTGGGTGGTTACGCGGGGACGGAGATAGTGACCAACACGCTGGGGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGCTTATCACATTCGCCAAAACGGAGAACCTACAGGTCGCAACCGCGAGCTGANACCATATCAGTCCCACCGAACGAGAACGTTNGCTTTGGCAAGCGCGACTACAACCAGCTGTCCTTCTCCTACCTAAACGATCTGGATCGATCCGATGCGGGAANACTACAACCCGAGCTGTACATAACGGAACAACTCCCCTCCCCCTGCGGTGTTGTGCCAGCGGTAGGCACTGCCCGACCGGCTAGAAAAAGCTCCCATTCAATACTGGTCGTCGTCTCTCGTGTGGANANTGGGGCAGCATCACGCGAATATGAAGTCTCTTCACACNGCGGCCNTAGCCCCGNGNCAAAATGAAAT] [+] EMBL AL933796 [GATCGCCCGAGTTACTCATCGGACGCTCGAGATGAACCGCAACAACTATCTGAATCCGCTCGGTTCCGGCGGTAATGGGGGCCCGGTAGTGCCCGGCACGCTCACACTCGGCCGCATCAAATCCGAGCGCAATAACTACATCAACGGGTACGGGGATACGCTGAATCGAAACAATTTAACGATGGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCTGNACCACAACAACGCCAACCACGGGTCGATACAAGCGTGAACCTGAACCAGGGCCACCATCATCACCCGATGCACAACGGGGGCCCAGGTGTGGGTGGTTACGCGGGGACGGAGATAGTGACCAACACGCTGGGGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGCTTATCACATTCGCCAAAACGGAGAACCTACAGGTCGCAACCGCGAGCTGANACCATATCAGTCCCACCGAACGAGAACGTTNGCTTTGGCAAGCGCGACTACAACCAGCTGTCCTTCTCCTACCTAAACGATCTGGATCGATCCGATGCGGGAANACTACAACCCGAGCTGTACATAACGGAACAACTCCCCTCCCCCTGCGGTGTTGTGCCAGCGGTAGGCACTGCCCGACCGGCTAGAAAAAGCTCCCATTCAATACTGGTCGTCGTCTCTCGTGTGGANANTGGGGCAGCATCACGCGAATATGAAGTCTCTTCACACNGCGGCCNTAGCCCCGNGNCAAAATGAAAT] consensusID : consensus_2408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [CCCGAGGTTAATACGGGGATACGCTGAATCGAAACAATTTAACGATTGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCGCACCACAACAACGCCAACCACGTGGTCTGAACAACTGTGAACCTGAACCATGTGCCACCATCATCACCCGATGCACAACGGGNGGCCCAGAGTGTGGGTGGTTACGCGTGGTGACTGGACGATAGTGACCAACACGCTGGGTGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGTTTCACATTACGCCAAAACGGAGACCTACAGTCGCAACCGCAGCTGAACCATATCAGTCCCACGAACGAAAACGTTAGCTTTGGGCCAAGCGCGACTACAACCAGCTGTACTTCTACCTACCTAANCCGATACTGGATCG] [+] EMBL AL929928 [CCCGAGGTTAATACGGGGATACGCTGAATCGAAACAATTTAACGATTGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCGCACCACAACAACGCCAACCACGTGGTCTGAACAACTGTGAACCTGAACCATGTGCCACCATCATCACCCGATGCACAACGGGNGGCCCAGAGTGTGGGTGGTTACGCGTGGTGACTGGACGATAGTGACCAACACGCTGGGTGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGTTTCACATTACGCCAAAACGGAGACCTACAGTCGCAACCGCAGCTGAACCATATCAGTCCCACGAACGAAAACGTTAGCTTTGGGCCAAGCGCGACTACAACCAGCTGTACTTCTACCTACCTAANCCGATACTGGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2408#0 GATCGCCCGAGTTACTCATCGGACGCTCGAGATGAACCGCAACAACTATCTGAATCCGCT 60 consensus_2408#1 ------------------------------------------------------------ consensus_2408#0 CGGTTCCGGCGGTAATGGGGGCCCGGTAGTGCCCGGCACGCTCACACTCGGCCGCATCAA 120 consensus_2408#1 ------------------------------------------------------------ consensus_2408#0 ATCCGAGCGCAATAACTACATCAACGGGTACGGGGATACGCTGAATCGAAACAATTTAAC 180 consensus_2408#1 -----------------CCCGAGGTTAATACGGGGATACGCTGAATCGAAACAATTTAAC 43 * ******************************** consensus_2408#0 GATGGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGC 240 consensus_2408#1 GATTGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGC 103 *** ******************************************************** consensus_2408#0 ACCTGNACCACAACAACGCCAACCACG-GGTCGATACAAGCGTGAACCTGAACCAGG-GC 298 consensus_2408#1 ACC-GCACCACAACAACGCCAACCACGTGGTCTGAACAACTGTGAACCTGAACCATGTGC 162 *** * ********************* **** **** ************** * ** consensus_2408#0 CACCATCATCACCCGATGCACAACGGGGG-CCCAG-GTGTGGGTGGTTACGCGGGG--AC 354 consensus_2408#1 CACCATCATCACCCGATGCACAACGGGNGGCCCAGAGTGTGGGTGGTTACGCGTGGTGAC 222 *************************** * ***** ***************** ** ** consensus_2408#0 GGA--GATAGTGACCAACACGCTGGG-GCGCAACAATCGCTACAACGATGTGCCAATCAC 411 consensus_2408#1 TGGACGATAGTGACCAACACGCTGGGTGCGCAACAATCGCTACAACGATGTGCCAATCAC 282 * ********************* ********************************* consensus_2408#0 GAATCCTCTGCTTATCACATT-CGCCAAAACGGAGAACCTACAGGTCGCAACCGCGAGCT 470 consensus_2408#1 GAATCCTCTGTT--TCACATTACGCCAAAACGGAGA-CCTACAG-TCGCAACCGC-AGCT 337 ********** * ******* ************** ******* ********** **** consensus_2408#0 GANACCATATCAGTCCCACCGAACGAGAACGTTNGCTTTGG--CAAGCGCGACTACAACC 528 consensus_2408#1 GAA-CCATATCAGTCCCAC-GAACGAAAACGTTAGCTTTGGGCCAAGCGCGACTACAACC 395 ** *************** ****** ****** ******* ***************** consensus_2408#0 AGCTGTCCTTCT-CCTACCTAAAC-GAT-CTGGATCGATCCGATGCGGGAANACTACAAC 585 consensus_2408#1 AGCTGTACTTCTACCTACCTAANCCGATACTGGATCG----------------------- 432 ****** ***** ********* * *** ******** consensus_2408#0 CCGAGCTGTACATAACGGAACAACTCCCCTCCCCCTGCGGTGTTGTGCCAGCGGTAGGCA 645 consensus_2408#1 ------------------------------------------------------------ consensus_2408#0 CTGCCCGACCGGCTAGAAAAAGCTCCCATTCAATACTGGTCGTCGTCTCTCGTGTGGANA 705 consensus_2408#1 ------------------------------------------------------------ consensus_2408#0 NTGGGGCAGCATCACGCGAATATGAAGTCTCTTCACACNGCGGCCNTAGCCCCGNGNCAA 765 consensus_2408#1 ------------------------------------------------------------ consensus_2408#0 AATGAAAT 773 consensus_2408#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||