cluster # 2410

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Anopheles gambiae
cluster # 2410 cluster # 2410 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2410#0 length = 728 sequences # 1

consensus_2410#1 length = 215 sequences # 1

consensusID : consensus_2410#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence

                              [CAGAATTCCGAGGTTAAAAGCTCCGAATAGTATCATCTCCCTGAAATTGTGCTCTCATCGTTTTTGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGGCGTGTNTGTGTNTTACGTTTTTTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTATANTTTCCGATAAGATTTTCGTAATAGCGTGAACACAAATGGCGACAATAAGTTGTGTAGGTCTCCAAGTATTCCTATGAAAAAAGTTGTACGANNANTTNCCGGGTACGTATCNCACTNAACCNGTACNCGTAACCTCACNTCATCCTACTCTTNCGGCAAAGTCTACTTAATTTCACATTTATCCCTCGCCGTNACGGTATTGTANCCTATTGATNACGTACTAGGACNCATNTCCTCTNAANTAAAACAATGGATACCCNGGAGAGNATAACGTTAAGCAGGATNTCGTNGCAAAGGGNTCATNCGAAACATACTTTNCGCAACNAACTGCAATACGGACGCGANGNCCCCTATGGTGANTCANCTCCNGGACGTGGCTNTCGNCNGTTAGTAACTAANCTNCCATGCGAAAAATCAAANCNTNAAANCCGTCANATCCAGCACCCTCGNACATCNCTTNCCNGAACCCTTTGCTANCGNCACGTCAANNAATCCCACCACAAACNCNTTACAANAGGCAGCTGGCCNCANTGTGGGAGANCCCCACGTCAAAANGCATNGGGANAGAC]

[+] EMBL AL929941             [CAGAATTCCGAGGTTAAAAGCTCCGAATAGTATCATCTCCCTGAAATTGTGCTCTCATCGTTTTTGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGGCGTGTNTGTGTNTTACGTTTTTTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTATANTTTCCGATAAGATTTTCGTAATAGCGTGAACACAAATGGCGACAATAAGTTGTGTAGGTCTCCAAGTATTCCTATGAAAAAAGTTGTACGANNANTTNCCGGGTACGTATCNCACTNAACCNGTACNCGTAACCTCACNTCATCCTACTCTTNCGGCAAAGTCTACTTAATTTCACATTTATCCCTCGCCGTNACGGTATTGTANCCTATTGATNACGTACTAGGACNCATNTCCTCTNAANTAAAACAATGGATACCCNGGAGAGNATAACGTTAAGCAGGATNTCGTNGCAAAGGGNTCATNCGAAACATACTTTNCGCAACNAACTGCAATACGGACGCGANGNCCCCTATGGTGANTCANCTCCNGGACGTGGCTNTCGNCNGTTAGTAACTAANCTNCCATGCGAAAAATCAAANCNTNAAANCCGTCANATCCAGCACCCTCGNACATCNCTTNCCNGAACCCTTTGCTANCGNCACGTCAANNAATCCCACCACAAACNCNTTACAANAGGCAGCTGGCCNCANTGTGGGAGANCCCCACGTCAAAANGCATNGGGANAGAC]




>consensus_2410#0
CAGAATTCCGAGGTTAAAAGCTCCGAATAGTATCATCTCCCTGAAATTGTGCTCTCATCG
TTTTTGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGGCGTGTNTGTGTNTTACGTTTT
TTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTATANTTTCCGATAAGATTTTCGTAA
TAGCGTGAACACAAATGGCGACAATAAGTTGTGTAGGTCTCCAAGTATTCCTATGAAAAA
AGTTGTACGANNANTTNCCGGGTACGTATCNCACTNAACCNGTACNCGTAACCTCACNTC
ATCCTACTCTTNCGGCAAAGTCTACTTAATTTCACATTTATCCCTCGCCGTNACGGTATT
GTANCCTATTGATNACGTACTAGGACNCATNTCCTCTNAANTAAAACAATGGATACCCNG
GAGAGNATAACGTTAAGCAGGATNTCGTNGCAAAGGGNTCATNCGAAACATACTTTNCGC
AACNAACTGCAATACGGACGCGANGNCCCCTATGGTGANTCANCTCCNGGACGTGGCTNT
CGNCNGTTAGTAACTAANCTNCCATGCGAAAAATCAAANCNTNAAANCCGTCANATCCAG
CACCCTCGNACATCNCTTNCCNGAACCCTTTGCTANCGNCACGTCAANNAATCCCACCAC
AAACNCNTTACAANAGGCAGCTGGCCNCANTGTGGGAGANCCCCACGTCAAAANGCATNG
GGANAGAC

consensusID : consensus_2410#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [TAACGCCTGCTGGTATGGTGATCTCTTACACATCCCCGCAACAACAAAAGCCTCCCGAATAGTATTCATCTCCCTGGAAATTGTGCTCTCATCGTTTATGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGACGTGTTGTGTGTTTTTGTTTTTTTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTACTACTTTCCGATAAGATTTTCGTA]

[+] EMBL BM644748             [TAACGCCTGCTGGTATGGTGATCTCTTACACATCCCCGCAACAACAAAAGCCTCCCGAATAGTATTCATCTCCCTGGAAATTGTGCTCTCATCGTTTATGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGACGTGTTGTGTGTTTTTGTTTTTTTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTACTACTTTCCGATAAGATTTTCGTA]




>consensus_2410#1
TAACGCCTGCTGGTATGGTGATCTCTTACACATCCCCGCAACAACAAAAGCCTCCCGAAT
AGTATTCATCTCCCTGGAAATTGTGCTCTCATCGTTTATGATTTTATTTTCTCTTCCATT
TGGAGTTCTTTGACGTGTTGTGTGTTTTTGTTTTTTTGTTTAAGTAATCTCAATAAATTC
TTCGAACGCTACTACTTTCCGATAAGATTTTCGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2410#0      ----------------------------CAGAATTCCGAGGT--TAAAAGCT--CCGAAT 28
consensus_2410#1      TAACGCCTGCTGGTATGGTGATCTCTTACACATCCCCGCAACAACAAAAGCCTCCCGAAT 60
                                                  ** *   ***       ******   ******

consensus_2410#0      AGTAT-CATCTCCCTG-AAATTGTGCTCTCATCGTTTTTGATTTTATTTTCTCTTCCATT 86
consensus_2410#1      AGTATTCATCTCCCTGGAAATTGTGCTCTCATCGTTTATGATTTTATTTTCTCTTCCATT 120
                      ***** ********** ******************** **********************

consensus_2410#0      TGGAGTTCTTTGGCGTGTN-TGTGTNTTACGTTTTTTGTTTAAGTAATCTCAATAAATTC 145
consensus_2410#1      TGGAGTTCTTTGACGTGTTGTGTGTTTTTGTTTTTTTGTTTAAGTAATCTCAATAAATTC 180
                      ************ *****  ***** **   *****************************

consensus_2410#0      TTCGAACGCTA-TANTTTCCGATAAGATTTTCGTAATAGCGTGAACACAAATGGCGACAA 204
consensus_2410#1      TTCGAACGCTACTACTTTCCGATAAGATTTTCGTA------------------------- 215
                      *********** ** ********************                         

consensus_2410#0      TAAGTTGTGTAGGTCTCCAAGTATTCCTATGAAAAAAGTTGTACGANNANTTNCCGGGTA 264
consensus_2410#1      ------------------------------------------------------------
                                                                                  

consensus_2410#0      CGTATCNCACTNAACCNGTACNCGTAACCTCACNTCATCCTACTCTTNCGGCAAAGTCTA 324
consensus_2410#1      ------------------------------------------------------------
                                                                                  

consensus_2410#0      CTTAATTTCACATTTATCCCTCGCCGTNACGGTATTGTANCCTATTGATNACGTACTAGG 384
consensus_2410#1      ------------------------------------------------------------
                                                                                  

consensus_2410#0      ACNCATNTCCTCTNAANTAAAACAATGGATACCCNGGAGAGNATAACGTTAAGCAGGATN 444
consensus_2410#1      ------------------------------------------------------------
                                                                                  

consensus_2410#0      TCGTNGCAAAGGGNTCATNCGAAACATACTTTNCGCAACNAACTGCAATACGGACGCGAN 504
consensus_2410#1      ------------------------------------------------------------
                                                                                  

consensus_2410#0      GNCCCCTATGGTGANTCANCTCCNGGACGTGGCTNTCGNCNGTTAGTAACTAANCTNCCA 564
consensus_2410#1      ------------------------------------------------------------
                                                                                  

consensus_2410#0      TGCGAAAAATCAAANCNTNAAANCCGTCANATCCAGCACCCTCGNACATCNCTTNCCNGA 624
consensus_2410#1      ------------------------------------------------------------
                                                                                  

consensus_2410#0      ACCCTTTGCTANCGNCACGTCAANNAATCCCACCACAAACNCNTTACAANAGGCAGCTGG 684
consensus_2410#1      ------------------------------------------------------------
                                                                                  

consensus_2410#0      CCNCANTGTGGGAGANCCCCACGTCAAAANGCATNGGGANAGAC 728
consensus_2410#1      --------------------------------------------