These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [CAGAATTCCGAGGTTAAAAGCTCCGAATAGTATCATCTCCCTGAAATTGTGCTCTCATCGTTTTTGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGGCGTGTNTGTGTNTTACGTTTTTTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTATANTTTCCGATAAGATTTTCGTAATAGCGTGAACACAAATGGCGACAATAAGTTGTGTAGGTCTCCAAGTATTCCTATGAAAAAAGTTGTACGANNANTTNCCGGGTACGTATCNCACTNAACCNGTACNCGTAACCTCACNTCATCCTACTCTTNCGGCAAAGTCTACTTAATTTCACATTTATCCCTCGCCGTNACGGTATTGTANCCTATTGATNACGTACTAGGACNCATNTCCTCTNAANTAAAACAATGGATACCCNGGAGAGNATAACGTTAAGCAGGATNTCGTNGCAAAGGGNTCATNCGAAACATACTTTNCGCAACNAACTGCAATACGGACGCGANGNCCCCTATGGTGANTCANCTCCNGGACGTGGCTNTCGNCNGTTAGTAACTAANCTNCCATGCGAAAAATCAAANCNTNAAANCCGTCANATCCAGCACCCTCGNACATCNCTTNCCNGAACCCTTTGCTANCGNCACGTCAANNAATCCCACCACAAACNCNTTACAANAGGCAGCTGGCCNCANTGTGGGAGANCCCCACGTCAAAANGCATNGGGANAGAC] [+] EMBL AL929941 [CAGAATTCCGAGGTTAAAAGCTCCGAATAGTATCATCTCCCTGAAATTGTGCTCTCATCGTTTTTGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGGCGTGTNTGTGTNTTACGTTTTTTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTATANTTTCCGATAAGATTTTCGTAATAGCGTGAACACAAATGGCGACAATAAGTTGTGTAGGTCTCCAAGTATTCCTATGAAAAAAGTTGTACGANNANTTNCCGGGTACGTATCNCACTNAACCNGTACNCGTAACCTCACNTCATCCTACTCTTNCGGCAAAGTCTACTTAATTTCACATTTATCCCTCGCCGTNACGGTATTGTANCCTATTGATNACGTACTAGGACNCATNTCCTCTNAANTAAAACAATGGATACCCNGGAGAGNATAACGTTAAGCAGGATNTCGTNGCAAAGGGNTCATNCGAAACATACTTTNCGCAACNAACTGCAATACGGACGCGANGNCCCCTATGGTGANTCANCTCCNGGACGTGGCTNTCGNCNGTTAGTAACTAANCTNCCATGCGAAAAATCAAANCNTNAAANCCGTCANATCCAGCACCCTCGNACATCNCTTNCCNGAACCCTTTGCTANCGNCACGTCAANNAATCCCACCACAAACNCNTTACAANAGGCAGCTGGCCNCANTGTGGGAGANCCCCACGTCAAAANGCATNGGGANAGAC] consensusID : consensus_2410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [TAACGCCTGCTGGTATGGTGATCTCTTACACATCCCCGCAACAACAAAAGCCTCCCGAATAGTATTCATCTCCCTGGAAATTGTGCTCTCATCGTTTATGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGACGTGTTGTGTGTTTTTGTTTTTTTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTACTACTTTCCGATAAGATTTTCGTA] [+] EMBL BM644748 [TAACGCCTGCTGGTATGGTGATCTCTTACACATCCCCGCAACAACAAAAGCCTCCCGAATAGTATTCATCTCCCTGGAAATTGTGCTCTCATCGTTTATGATTTTATTTTCTCTTCCATTTGGAGTTCTTTGACGTGTTGTGTGTTTTTGTTTTTTTGTTTAAGTAATCTCAATAAATTCTTCGAACGCTACTACTTTCCGATAAGATTTTCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2410#0 ----------------------------CAGAATTCCGAGGT--TAAAAGCT--CCGAAT 28 consensus_2410#1 TAACGCCTGCTGGTATGGTGATCTCTTACACATCCCCGCAACAACAAAAGCCTCCCGAAT 60 ** * *** ****** ****** consensus_2410#0 AGTAT-CATCTCCCTG-AAATTGTGCTCTCATCGTTTTTGATTTTATTTTCTCTTCCATT 86 consensus_2410#1 AGTATTCATCTCCCTGGAAATTGTGCTCTCATCGTTTATGATTTTATTTTCTCTTCCATT 120 ***** ********** ******************** ********************** consensus_2410#0 TGGAGTTCTTTGGCGTGTN-TGTGTNTTACGTTTTTTGTTTAAGTAATCTCAATAAATTC 145 consensus_2410#1 TGGAGTTCTTTGACGTGTTGTGTGTTTTTGTTTTTTTGTTTAAGTAATCTCAATAAATTC 180 ************ ***** ***** ** ***************************** consensus_2410#0 TTCGAACGCTA-TANTTTCCGATAAGATTTTCGTAATAGCGTGAACACAAATGGCGACAA 204 consensus_2410#1 TTCGAACGCTACTACTTTCCGATAAGATTTTCGTA------------------------- 215 *********** ** ******************** consensus_2410#0 TAAGTTGTGTAGGTCTCCAAGTATTCCTATGAAAAAAGTTGTACGANNANTTNCCGGGTA 264 consensus_2410#1 ------------------------------------------------------------ consensus_2410#0 CGTATCNCACTNAACCNGTACNCGTAACCTCACNTCATCCTACTCTTNCGGCAAAGTCTA 324 consensus_2410#1 ------------------------------------------------------------ consensus_2410#0 CTTAATTTCACATTTATCCCTCGCCGTNACGGTATTGTANCCTATTGATNACGTACTAGG 384 consensus_2410#1 ------------------------------------------------------------ consensus_2410#0 ACNCATNTCCTCTNAANTAAAACAATGGATACCCNGGAGAGNATAACGTTAAGCAGGATN 444 consensus_2410#1 ------------------------------------------------------------ consensus_2410#0 TCGTNGCAAAGGGNTCATNCGAAACATACTTTNCGCAACNAACTGCAATACGGACGCGAN 504 consensus_2410#1 ------------------------------------------------------------ consensus_2410#0 GNCCCCTATGGTGANTCANCTCCNGGACGTGGCTNTCGNCNGTTAGTAACTAANCTNCCA 564 consensus_2410#1 ------------------------------------------------------------ consensus_2410#0 TGCGAAAAATCAAANCNTNAAANCCGTCANATCCAGCACCCTCGNACATCNCTTNCCNGA 624 consensus_2410#1 ------------------------------------------------------------ consensus_2410#0 ACCCTTTGCTANCGNCACGTCAANNAATCCCACCACAAACNCNTTACAANAGGCAGCTGG 684 consensus_2410#1 ------------------------------------------------------------ consensus_2410#0 CCNCANTGTGGGAGANCCCCACGTCAAAANGCATNGGGANAGAC 728 consensus_2410#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||