cluster # 2417

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Anopheles gambiae
cluster # 2417 cluster # 2417 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2417#0 length = 216 sequences # 1

consensus_2417#1 length = 174 sequences # 1

consensusID : consensus_2417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [CGAACAACCGCTGCCCAGGGCGTGTGACGCACGCCAAAAGGGGGCGGACTGCCCGAGCAGGAACAGGGGACGCAAACAGGGAAGGTGCGACTCGAGCTACGCCGGAGCAGCAGTAACCACGAAGACCGAACGCCGGGGCGGGCACACGGAAGGCAAGGCGCAGTCCAACTCCGGAGCGGACGAGGGGCGTCCCCGGTGCCACCGAAGGGGAAACGG]

[+] EMBL BX604473             [CGAACAACCGCTGCCCAGGGCGTGTGACGCACGCCAAAAGGGGGCGGACTGCCCGAGCAGGAACAGGGGACGCAAACAGGGAAGGTGCGACTCGAGCTACGCCGGAGCAGCAGTAACCACGAAGACCGAACGCCGGGGCGGGCACACGGAAGGCAAGGCGCAGTCCAACTCCGGAGCGGACGAGGGGCGTCCCCGGTGCCACCGAAGGGGAAACGG]




>consensus_2417#0
CGAACAACCGCTGCCCAGGGCGTGTGACGCACGCCAAAAGGGGGCGGACTGCCCGAGCAG
GAACAGGGGACGCAAACAGGGAAGGTGCGACTCGAGCTACGCCGGAGCAGCAGTAACCAC
GAAGACCGAACGCCGGGGCGGGCACACGGAAGGCAAGGCGCAGTCCAACTCCGGAGCGGA
CGAGGGGCGTCCCCGGTGCCACCGAAGGGGAAACGG

consensusID : consensus_2417#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [TCCCAACCGCCGCCGGGGTTCGGGCCGAAGAAGGACGAACAACCGCCGCCCAGGCCGTTGGACGCACGCCAAAAGAGGGCGGACGGCCCGAGCAGGAACAGGGGACGCAAACAGGGAAGGGGCGACCCGAGCCACGCCGAAGCAGCAGGACCCACGAAGACCGAACGCGGGGGC]

[+] EMBL BX606668             [TCCCAACCGCCGCCGGGGTTCGGGCCGAAGAAGGACGAACAACCGCCGCCCAGGCCGTTGGACGCACGCCAAAAGAGGGCGGACGGCCCGAGCAGGAACAGGGGACGCAAACAGGGAAGGGGCGACCCGAGCCACGCCGAAGCAGCAGGACCCACGAAGACCGAACGCGGGGGC]




>consensus_2417#1
TCCCAACCGCCGCCGGGGTTCGGGCCGAAGAAGGACGAACAACCGCCGCCCAGGCCGTTG
GACGCACGCCAAAAGAGGGCGGACGGCCCGAGCAGGAACAGGGGACGCAAACAGGGAAGG
GGCGACCCGAGCCACGCCGAAGCAGCAGGACCCACGAAGACCGAACGCGGGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2417#0      -----------------------------------CGAACAACCGCTGCCCAGGGCGTGT 25
consensus_2417#1      TCCCAACCGCCGCCGGGGTTCGGGCCGAAGAAGGACGAACAACCGCCGCCCAGGCCGTTG 60
                                                         *********** ******* ***  

consensus_2417#0      GACGCACGCCAAAAGGGGGCGGACTGCCCGAGCAGGAACAGGGGACGCAAACAGGGAAGG 85
consensus_2417#1      GACGCACGCCAAAAGAGGGCGGACGGCCCGAGCAGGAACAGGGGACGCAAACAGGGAAGG 120
                      *************** ******** ***********************************

consensus_2417#0      TGCGACTCGAGCTACGCCGGAGCAGCAGTAACCACGAAGACCGAACGCCGGGGCGGGCAC 145
consensus_2417#1      GGCGACCCGAGCCACGCCGAAGCAGCAGGACCCACGAAGACCGAACGCGGGGGC------ 174
                       ***** ***** ****** ******** * ***************** *****      

consensus_2417#0      ACGGAAGGCAAGGCGCAGTCCAACTCCGGAGCGGACGAGGGGCGTCCCCGGTGCCACCGA 205
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      AGGGGAAACGG 216
consensus_2417#1      -----------