cluster # 2425

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Anopheles gambiae
cluster # 2425 cluster # 2425 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2425#0 length = 787 sequences # 1

consensus_2425#1 length = 681 sequences # 1

consensusID : consensus_2425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence

                              [CAAGAATCGCCTGAGGTTAAAACCCCAAAAACGATACAATGCGATGTGTATACGGTAAAAGTGGTGNTGTANTGTACGTGTCGGGCGAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGTGCAGTGTGAANGAGAACAATATTTATATCAATTGTTTGAACATAAAGAAAACCNACAAACTTAAACACCAANATTGTTTTGCTGCACACACTTCATAGCCCAAATTGTGGATCCATTTAACACATGTGTTGTACACAGCANCATGCAAGTTACCATGCATTCATTTATCTGAACCATGAAACCAACAAAACAAAAAATGCCAACCAGATTACAACATTTGCAACAGCAGCACGGAGTATTAGCAGCATTAATTGCAACTTAAAAGACCACACATTTGTACCAGNCAGTCNCACGCGATCGAAACGATCGCACTNAAACTCTACTTGCGAATACCATGACCAACAACAAACTGCACCACACACGCGTGCCAACCACTNTGAAACTGATAACAACCTATTTCACATATTCATATATATACACTTGAANNAAACAAACANACACATATATCATANCACCACAGACANATACTTATATAAANAATTGNCACCNCCAGGGTGTGTNATCTGNACACNAGGCGAGGCCAAATAAANAACCAGAACAGACAAAGNAAACAACACAACAANAAAAACACGACGGCAGAGTGTGCAGGAGTAACNAGAGAACTGGGCGAAACTCAATNAAATTCANAANCCACAAAATCCGGACACAACTCNGTCAG]

[+] EMBL AL930068             [CAAGAATCGCCTGAGGTTAAAACCCCAAAAACGATACAATGCGATGTGTATACGGTAAAAGTGGTGNTGTANTGTACGTGTCGGGCGAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGTGCAGTGTGAANGAGAACAATATTTATATCAATTGTTTGAACATAAAGAAAACCNACAAACTTAAACACCAANATTGTTTTGCTGCACACACTTCATAGCCCAAATTGTGGATCCATTTAACACATGTGTTGTACACAGCANCATGCAAGTTACCATGCATTCATTTATCTGAACCATGAAACCAACAAAACAAAAAATGCCAACCAGATTACAACATTTGCAACAGCAGCACGGAGTATTAGCAGCATTAATTGCAACTTAAAAGACCACACATTTGTACCAGNCAGTCNCACGCGATCGAAACGATCGCACTNAAACTCTACTTGCGAATACCATGACCAACAACAAACTGCACCACACACGCGTGCCAACCACTNTGAAACTGATAACAACCTATTTCACATATTCATATATATACACTTGAANNAAACAAACANACACATATATCATANCACCACAGACANATACTTATATAAANAATTGNCACCNCCAGGGTGTGTNATCTGNACACNAGGCGAGGCCAAATAAANAACCAGAACAGACAAAGNAAACAACACAACAANAAAAACACGACGGCAGAGTGTGCAGGAGTAACNAGAGAACTGGGCGAAACTCAATNAAATTCANAANCCACAAAATCCGGACACAACTCNGTCAG]




>consensus_2425#0
CAAGAATCGCCTGAGGTTAAAACCCCAAAAACGATACAATGCGATGTGTATACGGTAAAA
GTGGTGNTGTANTGTACGTGTCGGGCGAGCGAAATGAATAGAAAGAATGAAATTAAACCA
ATAGAAAGTGCAGTGTGAANGAGAACAATATTTATATCAATTGTTTGAACATAAAGAAAA
CCNACAAACTTAAACACCAANATTGTTTTGCTGCACACACTTCATAGCCCAAATTGTGGA
TCCATTTAACACATGTGTTGTACACAGCANCATGCAAGTTACCATGCATTCATTTATCTG
AACCATGAAACCAACAAAACAAAAAATGCCAACCAGATTACAACATTTGCAACAGCAGCA
CGGAGTATTAGCAGCATTAATTGCAACTTAAAAGACCACACATTTGTACCAGNCAGTCNC
ACGCGATCGAAACGATCGCACTNAAACTCTACTTGCGAATACCATGACCAACAACAAACT
GCACCACACACGCGTGCCAACCACTNTGAAACTGATAACAACCTATTTCACATATTCATA
TATATACACTTGAANNAAACAAACANACACATATATCATANCACCACAGACANATACTTA
TATAAANAATTGNCACCNCCAGGGTGTGTNATCTGNACACNAGGCGAGGCCAAATAAANA
ACCAGAACAGACAAAGNAAACAACACAACAANAAAAACACGACGGCAGAGTGTGCAGGAG
TAACNAGAGAACTGGGCGAAACTCAATNAAATTCANAANCCACAAAATCCGGACACAACT
CNGTCAG

consensusID : consensus_2425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [GAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGGCAGGTGAAAGAGAAAAATATTTATATCAATGTTGAACATAAAGAAAACCAACAAACTTAAAACAAATGTTTGCGAAACTTATAGCCAAATGGATCATTTAAACAATGGTGTAAAGAAAGAAGTTACAGATTATTTATCGAACAGAAACAAAAAACAAAAAGCAACAGATACAACATTGAAAGAGCACGAGTATAGAGATAATGCAACTAAAGACAAATTGTAGAGAAGTAAAGAGATCGAAACGATCGCATGAAACTTAGTGCGAATACCAGCCAACAACAAACGCACACACACGCGGCAAAGAAGGAAAAGATAAAACCTATTTAATATTATATATATACACTGAAAAAAAAACACACATATATATACACACACACATACTTATATAAAAATGTCACCCAGGGTGGTATTGAAACGAGCGAGCAAAATAAAACAGAACAGAACAGAAACAAAAAACAAAACACGACGCAGAGTGTGAGGAGTTATGAGAATGGGCGATTTTCTTTTACTTCTTCCATTAGTCCGACACATCGTCGCCACATTATATCATCATCATGATTCTAGTTGTTTATTGTTTAAGAACCGTTGTTGTTTATGGGAAATATCGAAAAACCAAGGATGAAATTAATAAATAAAAG]

[+] EMBL BX611815             [GAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGGCAGGTGAAAGAGAAAAATATTTATATCAATGTTGAACATAAAGAAAACCAACAAACTTAAAACAAATGTTTGCGAAACTTATAGCCAAATGGATCATTTAAACAATGGTGTAAAGAAAGAAGTTACAGATTATTTATCGAACAGAAACAAAAAACAAAAAGCAACAGATACAACATTGAAAGAGCACGAGTATAGAGATAATGCAACTAAAGACAAATTGTAGAGAAGTAAAGAGATCGAAACGATCGCATGAAACTTAGTGCGAATACCAGCCAACAACAAACGCACACACACGCGGCAAAGAAGGAAAAGATAAAACCTATTTAATATTATATATATACACTGAAAAAAAAACACACATATATATACACACACACATACTTATATAAAAATGTCACCCAGGGTGGTATTGAAACGAGCGAGCAAAATAAAACAGAACAGAACAGAAACAAAAAACAAAACACGACGCAGAGTGTGAGGAGTTATGAGAATGGGCGATTTTCTTTTACTTCTTCCATTAGTCCGACACATCGTCGCCACATTATATCATCATCATGATTCTAGTTGTTTATTGTTTAAGAACCGTTGTTGTTTATGGGAAATATCGAAAAACCAAGGATGAAATTAATAAATAAAAG]




>consensus_2425#1
GAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGGCAGGTGAAAGAGAAAAA
TATTTATATCAATGTTGAACATAAAGAAAACCAACAAACTTAAAACAAATGTTTGCGAAA
CTTATAGCCAAATGGATCATTTAAACAATGGTGTAAAGAAAGAAGTTACAGATTATTTAT
CGAACAGAAACAAAAAACAAAAAGCAACAGATACAACATTGAAAGAGCACGAGTATAGAG
ATAATGCAACTAAAGACAAATTGTAGAGAAGTAAAGAGATCGAAACGATCGCATGAAACT
TAGTGCGAATACCAGCCAACAACAAACGCACACACACGCGGCAAAGAAGGAAAAGATAAA
ACCTATTTAATATTATATATATACACTGAAAAAAAAACACACATATATATACACACACAC
ATACTTATATAAAAATGTCACCCAGGGTGGTATTGAAACGAGCGAGCAAAATAAAACAGA
ACAGAACAGAAACAAAAAACAAAACACGACGCAGAGTGTGAGGAGTTATGAGAATGGGCG
ATTTTCTTTTACTTCTTCCATTAGTCCGACACATCGTCGCCACATTATATCATCATCATG
ATTCTAGTTGTTTATTGTTTAAGAACCGTTGTTGTTTATGGGAAATATCGAAAAACCAAG
GATGAAATTAATAAATAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2425#0      CAAGAATCGCCTGAGGTTAAAACCCCAAAAACGATACAATGCGATGTGTATACGGTAAAA 60
consensus_2425#1      ------------------------------------------------------------
                                                                                  

consensus_2425#0      GTGGTGNTGTANTGTACGTGTCGGGCGAGCGAAATGAATAGAAAGAATGAAATTAAACCA 120
consensus_2425#1      --------------------------GAGCGAAATGAATAGAAAGAATGAAATTAAACCA 34
                                                **********************************

consensus_2425#0      ATAGAAAGTGCAGTGTGAANGAGAACAATATTTATATCAATTGTTTGAACATAAAGAAAA 180
consensus_2425#1      ATAGAAAG-GCAG-GTGAAAGAGAAAAATATTTATATCAATG--TTGAACATAAAGAAAA 90
                      ******** **** ***** ***** ***************   ****************

consensus_2425#0      CCNACAAACTTAAACACCAANATTGTTTTGCTGCACACACTTCATAGCCCAAATTGTGGA 240
consensus_2425#1      CCAACAAACTTAAA-ACAAATGTT---------TGCGAAACTTATAGCCAAA----TGGA 136
                      ** *********** ** **  **           *  *  * ****** **    ****

consensus_2425#0      TCCATTTAACACATGTGTTGTACACAGCANCATGCAAGTTACCATGCATTCATTTATCTG 300
consensus_2425#1      TCATTTAAACA---ATGGTGTA------AAGAAAGAAGTTACA----GATTATTTATC-G 182
                      **  ** ****    ** ****      *  *   *******       * ******* *

consensus_2425#0      AACCATGAAACCAACAAAACAAAAAATGCCAACCAGATTACAACATTTGCAACAGCAGCA 360
consensus_2425#1      AAC---AGAAACAA-AAAACAAAAAGC----AACAGAT-ACAACATTGA----AAGAGCA 229
                      ***     ** *** **********      * ***** ********      *  ****

consensus_2425#0      CGGAGTATTAGCAGCATTAATTGCAACTTAAAAGACCACACATTTGTACCAGNCAGTCNC 420
consensus_2425#1      CG-AGTAT----AGAGATAAT-GCAACTAAAGACA------AATTGTA--GAGAAGTAAA 275
                      ** *****    **   **** ****** ** * *      * *****      ***   

consensus_2425#0      ACGCGATCGAAACGATCGCACTNAAACTCTACTTGCGAATACCATGACCAACAACAAACT 480
consensus_2425#1      --GAGATCGAAACGATCGCA-TGAAACTTAG--TGCGAATACCA--GCCAACAACAAACG 328
                        * **************** * *****     ***********   ************ 

consensus_2425#0      GCACCACACACGCGTGCCAACCACTNTGAAACTGATAACAACCTATTTCACATATTCATA 540
consensus_2425#1      ----CACACACACGCGGCAAAGA---AGGAAAAGATAA-AACCTATTTAATAT---TATA 377
                          ******* ** * ***  *    * **  ***** ********* * **    ***

consensus_2425#0      TATATACACTTGAANNAAACAAACANACACATATATCATANCACCACAGACANATACTTA 600
consensus_2425#1      TATATACACTGAAAAAAA---AACACACATATATATA-------CACACACACATACTTA 427
                      **********  **  **   **** *** ******        **** *** *******

consensus_2425#0      TATAAANAATTGNCACCNCCAGGGTGTGTNATCTGNACACNAGGCGAGGCCAAATAAANA 660
consensus_2425#1      TATAAAAA--TGTCACCC--AGGGTG----GTATTGAAACGAG-CGAG-CAAAATAAAA- 476
                      ****** *  ** ****   ******     * *  * ** ** **** * *******  

consensus_2425#0      ACCAGAACAGACAAAGNAAACAACACAACAANAAAAACACGACGGCAGAGTGTGCAGGAG 720
consensus_2425#1      --CAGAACAGA-ACAGAAA------CAAAAAACAAAACACGACG-CAGAGTGTG-AGGAG 525
                        ********* * ** **      *** **  *********** ********* *****

consensus_2425#0      TAACNAGAGAACTGGGCGAAACTCAATNAAATTCANAANC-------CACAAAATCCGGA 773
consensus_2425#1      TTATGAGAA---TGGGCGATTTTCTTTTACTTCTTCCATTAGTCCGACACATCGTCGCCA 582
                      * *  ***    *******   **  * *  *     *         ****   **   *

consensus_2425#0      CACAACTCNGTCAG---------------------------------------------- 787
consensus_2425#1      CATTATATCATCATCATGATTCTAGTTGTTTATTGTTTAAGAACCGTTGTTGTTTATGGG 642
                      **  *     ***                                               

consensus_2425#0      ---------------------------------------
consensus_2425#1      AAATATCGAAAAACCAAGGATGAAATTAATAAATAAAAG 681