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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence
[ACCGGCAACAGGTCATCACGCACATCGACATGCACAACCATCCGGAAAAGTATTGATGCGAGGTCTGCAAGGAGGTGCACCAGAATCTGCATCAACACATGATGAAGGCCCATGCGCCAACCACGGCGGACGAGGCGGACAAAAAGTACAAGTGCGATCAGTGTGGAAGGTCGTTCAACTTCCTGGCGAACTTAAAGATGCACGTGGATTGCGTCCACGGCGTGAAGGACGTGAAGTGCAATGTGTGCAACAAATTCTTCAACTACAGAGCCTATCGGACGCACAAGCGTACCGCGCACACCGACCTGATGCTGATGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGATCCTTCAAGTGCGAGGTGTGTGGCAAGGGTTTCTCCACCAAGCTGACGATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTATAAGCACCGGAAGAAGGCACACC]
[+] EMBL BX608877 [ACCGGCAACAGGTCATCACGCACATCGACATGCACAACCATCCGGAAAAGTATTGATGCGAGGTCTGCAAGGAGGTGCACCAGAATCTGCATCAACACATGATGAAGGCCCATGCGCCAACCACGGCGGACGAGGCGGACAAAAAGTACAAGTGCGATCAGTGTGGAAGGTCGTTCAACTTCCTGGCGAACTTAAAGATGCACGTGGATTGCGTCCACGGCGTGAAGGACGTGAAGTGCAATGTGTGCAACAAATTCTTCAACTACAGAGCCTATCGGACGCACAAGCGTACCGCGCACACCGACCTGATGCTGATGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGATCCTTCAAGTGCGAGGTGTGTGGCAAGGGTTTCTCCACCAAGCTGACGATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTATAAGCACCGGAAGAAGGCACACC]
consensusID : consensus_2426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[CCGCCCACGCGTCCGGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGCTCCTTCAAGTGCGAGGTGTGCGGCAAGGGTTTCTCCACCAAGCTGACTATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTACAAGCACCGGAAGAAGGCACACCCGCTCGAGTGGCAGGAGGTGCAGGCGCACCCGGAAGAAAACATTGCATCGGTAATCGTCGTTCGAAACTGAAGTGCTGTGGTTTTCTGTTTTCTTTACCATTC]
[+] EMBL BM596316 [CCGCCCACGCGTCCGGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGCTCCTTCAAGTGCGAGGTGTGCGGCAAGGGTTTCTCCACCAAGCTGACTATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTACAAGCACCGGAAGAAGGCACACCCGCTCGAGTGGCAGGAGGTGCAGGCGCACCCGGAAGAAAACATTGCATCGGTAATCGTCGTTCGAAACTGAAGTGCTGTGGTTTTCTGTTTTCTTTACCATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2426#0 ACCGGCAACAGGTCATCACGCACATCGACATGCACAACCATCCGGAAAAGTATTGATGCG 60
consensus_2426#1 ------------------------------------------------------------
consensus_2426#0 AGGTCTGCAAGGAGGTGCACCAGAATCTGCATCAACACATGATGAAGGCCCATGCGCCAA 120
consensus_2426#1 ------------------------------------------------------------
consensus_2426#0 CCACGGCGGACGAGGCGGACAAAAAGTACAAGTGCGATCAGTGTGGAAGGTCGTTCAACT 180
consensus_2426#1 ------------------------------------------------------------
consensus_2426#0 TCCTGGCGAACTTAAAGATGCACGTGGATTGCGTCCACGGCGTGAAGGACGTGAAGTGCA 240
consensus_2426#1 ------------------------------------------------------------
consensus_2426#0 ATGTGTGCAACAAATTCTTCAACTACAGAGCCTATCGGACGCACAAGCGTACCGCGCACA 300
consensus_2426#1 ------------------------------------------------------------
consensus_2426#0 CCGACCTGATGCTGATGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCG 360
consensus_2426#1 CCGCCCACGCGTCCG-GTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCG 59
*** ** * ********************************************
consensus_2426#0 AAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCG 420
consensus_2426#1 AAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCG 119
************************************************************
consensus_2426#0 GTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGG 480
consensus_2426#1 GTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGG 179
************************************************************
consensus_2426#0 ACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCC 540
consensus_2426#1 ACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCC 239
************************************************************
consensus_2426#0 ATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGATCCTTCAAGTGCGAGGTGTGTG 600
consensus_2426#1 ATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGCTCCTTCAAGTGCGAGGTGTGCG 299
************************************* ******************** *
consensus_2426#0 GCAAGGGTTTCTCCACCAAGCTGACGATGATGGAACATATGACGACGCACACGCGCACCA 660
consensus_2426#1 GCAAGGGTTTCTCCACCAAGCTGACTATGATGGAACATATGACGACGCACACGCGCACCA 359
************************* **********************************
consensus_2426#0 ATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTATAAGC 720
consensus_2426#1 ATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTACAAGC 419
******************************************************* ****
consensus_2426#0 ACCGGAAGAAGGCACACC------------------------------------------ 738
consensus_2426#1 ACCGGAAGAAGGCACACCCGCTCGAGTGGCAGGAGGTGCAGGCGCACCCGGAAGAAAACA 479
******************
consensus_2426#0 ------------------------------------------------------------
consensus_2426#1 TTGCATCGGTAATCGTCGTTCGAAACTGAAGTGCTGTGGTTTTCTGTTTTCTTTACCATT 539
consensus_2426#0 -
consensus_2426#1 C 540
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||