These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [GGCGCTCTCGTGTGTCGCGTGCAGTGAAGTGAAGTTGCAGCCAGACAGGCAGTGAGAGTGGATCGGTTTTAGCGCGCCCCCCCCGTGGATAGCGGTGCTGCTAGGCAGTGTGTTTGTGGATCGTGCGTGTGTGACAAATCTGACAACCCAAGATCATTCTTTTGGCCCAATTTGTTTGGATGTGCGTGTGCAATTGGAAAATGAACCGCTGTGACTTGAGAGAATCATTCCGACGAAAGTGAACCTTCTGAGTGCCAACAGAACCCCAATTCTTGTGTGATCTTGAGCGCGAGTTCTGAGCACTTACAATGCAATGCAGCCGATGATCGAGTGATAAAGTGTCAAAGTTCAGTTCCTCAAAAAACACTTACACCATCTTCAGATCGAGTCCACCTAGCCTAGGATCGCATTCCCTGTCCCTGCTGTCGCTGCTGACCCTGTCATCTTCCTTCCAACATCCTGACCATCCCTCGCTGGGCACCTCATAATGCCACCGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGNTTACTTTCCCGCCCGACGGTACCGTCCGTGGCGTACGGGTCCTCGNCACCCGCTCCTCCGTCCTTCTA] [+] EMBL BX624654 [GGCGCTCTCGTGTGTCGCGTGCAGTGAAGTGAAGTTGCAGCCAGACAGGCAGTGAGAGTGGATCGGTTTTAGCGCGCCCCCCCCGTGGATAGCGGTGCTGCTAGGCAGTGTGTTTGTGGATCGTGCGTGTGTGACAAATCTGACAACCCAAGATCATTCTTTTGGCCCAATTTGTTTGGATGTGCGTGTGCAATTGGAAAATGAACCGCTGTGACTTGAGAGAATCATTCCGACGAAAGTGAACCTTCTGAGTGCCAACAGAACCCCAATTCTTGTGTGATCTTGAGCGCGAGTTCTGAGCACTTACAATGCAATGCAGCCGATGATCGAGTGATAAAGTGTCAAAGTTCAGTTCCTCAAAAAACACTTACACCATCTTCAGATCGAGTCCACCTAGCCTAGGATCGCATTCCCTGTCCCTGCTGTCGCTGCTGACCCTGTCATCTTCCTTCCAACATCCTGACCATCCCTCGCTGGGCACCTCATAATGCCACCGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGNTTACTTTCCCGCCCGACGGTACCGTCCGTGGCGTACGGGTCCTCGNCACCCGCTCCTCCGTCCTTCTA] consensusID : consensus_2436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [GCCGAGGATATGAGCACGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGTTTACTTTCCCCGCCCGACGGTACCGTCCGTGGCGTACGGCTCCTCGCCACCCGCTCCTCCGTCCTTCTACCGTCCACAGCACGGCGCCATCGCCCCGTACAGCCATGGCCTCACGCGGGTAGCGTCACCGCTTAAACCCTCCACCGCGCGCCCTGTTCAATTGGCAATCTGTTCCAGTACTCCAACTACGGCTCCCCGTTTCCCTTCCTCACCGGCAACCACCTCAGCCTGGGCGATGAGGAAACGTACATCGCGGACTGGACGCATCCTCAAGCAGTACGCCGTGATGGAGTTCCACGCGGAGGAGCAGGAGCGGAACCAGTACCACCAGCAGCAGCTGCTCCAGGG] [+] EMBL AL930157 [GCCGAGGATATGAGCACGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGTTTACTTTCCCCGCCCGACGGTACCGTCCGTGGCGTACGGCTCCTCGCCACCCGCTCCTCCGTCCTTCTACCGTCCACAGCACGGCGCCATCGCCCCGTACAGCCATGGCCTCACGCGGGTAGCGTCACCGCTTAAACCCTCCACCGCGCGCCCTGTTCAATTGGCAATCTGTTCCAGTACTCCAACTACGGCTCCCCGTTTCCCTTCCTCACCGGCAACCACCTCAGCCTGGGCGATGAGGAAACGTACATCGCGGACTGGACGCATCCTCAAGCAGTACGCCGTGATGGAGTTCCACGCGGAGGAGCAGGAGCGGAACCAGTACCACCAGCAGCAGCTGCTCCAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2436#0 GGCGCTCTCGTGTGTCGCGTGCAGTGAAGTGAAGTTGCAGCCAGACAGGCAGTGAGAGTG 60 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 GATCGGTTTTAGCGCGCCCCCCCCGTGGATAGCGGTGCTGCTAGGCAGTGTGTTTGTGGA 120 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 TCGTGCGTGTGTGACAAATCTGACAACCCAAGATCATTCTTTTGGCCCAATTTGTTTGGA 180 consensus_2436#1 ------------------GCCGAGGA--TATGAGCACGTTAGCGACATGCTTTCTCCTGT 40 * ** * * ** ** * * * *** * * consensus_2436#0 TGTGCGTGTGCAATTGGAAAATGAACCGCTGTGACTTGAGAGAATCATTCCGACGAAAGT 240 consensus_2436#1 TCCTTTTG-GTACTTGCCTACCACGGCGCTGT--CTCGGCGAAAGGAATCAAGCAGAAGC 97 * ** * * *** * ****** ** * ** * ** * *** consensus_2436#0 GAACCTTCTGAGTGCCAACAGAACCCCAATTCTTGTGTGATCTTGAGCGCGAGTTCTGAG 300 consensus_2436#1 GGCTCGTCATCGATCTGAGAGATCCT---TTGCTGAGCGTCACCGATCCCACCCACTCCG 154 * * ** * * * *** ** ** ** * * ** * * ** * consensus_2436#0 CACTTACAATGCAATGCAGCCGATGATCGAGTGATAAAGTGTCAAAGTTCAGTTCCTCAA 360 consensus_2436#1 CCGTTTACTTTCCCCGC--CCGACGGTACCGTCC----GTGGC---GTACGGCTCCTCGC 205 * ** * * ** **** * * ** *** * ** * * ***** consensus_2436#0 AAAACACTTACACCATCTTCAGATCGAGTCCACCTAGCCTAGGATCGCATTCCCTGTCCC 420 consensus_2436#1 CACCCGCTC-CTCCGTCCTTCTACC--GTCCAC--AGC--ACGGCGCCATCGCCCCGTAC 258 * * ** * ** ** * * * ****** *** * * *** ** * consensus_2436#0 TGCTGTCGCTGCTGACCCTGTCATCTTC-CTTCCAACATCCTGACCATCCCTCGCTGGGC 479 consensus_2436#1 AGCCATGGC--CTCACGCGGGTAGCGTCACCGCTTAAACCCT--CCACCGCGCGCCCTG- 313 ** * ** ** ** * * * * ** * * * * *** *** * * *** * consensus_2436#0 ACCTCATAATGCCACCGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACC 539 consensus_2436#1 --TTCAATTGGCAATCTGTTCCAGTACTCCAACTACGGCTCCCCGTTTCCCTTCCTCACC 371 *** ** * * * * * * ** * * *** * *** * *** consensus_2436#0 ACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATC 599 consensus_2436#1 G-GCAACCACCTCAGCCTGGGCGATGA---GGAAACG-TACATCGCGGACTGGACGCATC 426 * * *** ** * ** * *** ** * ** ** ** *** consensus_2436#0 CTTT-GCTGAGCGTCACCGATCCCACCCACTCCGCCGNTTACTTTCCCGCCCGACGGTAC 658 consensus_2436#1 CTCAAGCAGTACGCCGTGATGGAGTTCCACGCGGAGGAGCAGGAGCGGAACCA---GTAC 483 ** ** * ** * **** * * * * * ** **** consensus_2436#0 CGTCCGTGGCGTACGGGTCCTCGNCACCCGCTCCTCCGTCCTTCTA 704 consensus_2436#1 CACCAGCAGCA-GCTGCTCCAGGG---------------------- 506 * * * ** * * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||