cluster # 2436

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Anopheles gambiae
cluster # 2436 cluster # 2436 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2436#0 length = 704 sequences # 1

consensus_2436#1 length = 506 sequences # 1

consensusID : consensus_2436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [GGCGCTCTCGTGTGTCGCGTGCAGTGAAGTGAAGTTGCAGCCAGACAGGCAGTGAGAGTGGATCGGTTTTAGCGCGCCCCCCCCGTGGATAGCGGTGCTGCTAGGCAGTGTGTTTGTGGATCGTGCGTGTGTGACAAATCTGACAACCCAAGATCATTCTTTTGGCCCAATTTGTTTGGATGTGCGTGTGCAATTGGAAAATGAACCGCTGTGACTTGAGAGAATCATTCCGACGAAAGTGAACCTTCTGAGTGCCAACAGAACCCCAATTCTTGTGTGATCTTGAGCGCGAGTTCTGAGCACTTACAATGCAATGCAGCCGATGATCGAGTGATAAAGTGTCAAAGTTCAGTTCCTCAAAAAACACTTACACCATCTTCAGATCGAGTCCACCTAGCCTAGGATCGCATTCCCTGTCCCTGCTGTCGCTGCTGACCCTGTCATCTTCCTTCCAACATCCTGACCATCCCTCGCTGGGCACCTCATAATGCCACCGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGNTTACTTTCCCGCCCGACGGTACCGTCCGTGGCGTACGGGTCCTCGNCACCCGCTCCTCCGTCCTTCTA]

[+] EMBL BX624654             [GGCGCTCTCGTGTGTCGCGTGCAGTGAAGTGAAGTTGCAGCCAGACAGGCAGTGAGAGTGGATCGGTTTTAGCGCGCCCCCCCCGTGGATAGCGGTGCTGCTAGGCAGTGTGTTTGTGGATCGTGCGTGTGTGACAAATCTGACAACCCAAGATCATTCTTTTGGCCCAATTTGTTTGGATGTGCGTGTGCAATTGGAAAATGAACCGCTGTGACTTGAGAGAATCATTCCGACGAAAGTGAACCTTCTGAGTGCCAACAGAACCCCAATTCTTGTGTGATCTTGAGCGCGAGTTCTGAGCACTTACAATGCAATGCAGCCGATGATCGAGTGATAAAGTGTCAAAGTTCAGTTCCTCAAAAAACACTTACACCATCTTCAGATCGAGTCCACCTAGCCTAGGATCGCATTCCCTGTCCCTGCTGTCGCTGCTGACCCTGTCATCTTCCTTCCAACATCCTGACCATCCCTCGCTGGGCACCTCATAATGCCACCGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGNTTACTTTCCCGCCCGACGGTACCGTCCGTGGCGTACGGGTCCTCGNCACCCGCTCCTCCGTCCTTCTA]




>consensus_2436#0
GGCGCTCTCGTGTGTCGCGTGCAGTGAAGTGAAGTTGCAGCCAGACAGGCAGTGAGAGTG
GATCGGTTTTAGCGCGCCCCCCCCGTGGATAGCGGTGCTGCTAGGCAGTGTGTTTGTGGA
TCGTGCGTGTGTGACAAATCTGACAACCCAAGATCATTCTTTTGGCCCAATTTGTTTGGA
TGTGCGTGTGCAATTGGAAAATGAACCGCTGTGACTTGAGAGAATCATTCCGACGAAAGT
GAACCTTCTGAGTGCCAACAGAACCCCAATTCTTGTGTGATCTTGAGCGCGAGTTCTGAG
CACTTACAATGCAATGCAGCCGATGATCGAGTGATAAAGTGTCAAAGTTCAGTTCCTCAA
AAAACACTTACACCATCTTCAGATCGAGTCCACCTAGCCTAGGATCGCATTCCCTGTCCC
TGCTGTCGCTGCTGACCCTGTCATCTTCCTTCCAACATCCTGACCATCCCTCGCTGGGCA
CCTCATAATGCCACCGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCA
CGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCC
TTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGNTTACTTTCCCGCCCGACGGTACCG
TCCGTGGCGTACGGGTCCTCGNCACCCGCTCCTCCGTCCTTCTA

consensusID : consensus_2436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [GCCGAGGATATGAGCACGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGTTTACTTTCCCCGCCCGACGGTACCGTCCGTGGCGTACGGCTCCTCGCCACCCGCTCCTCCGTCCTTCTACCGTCCACAGCACGGCGCCATCGCCCCGTACAGCCATGGCCTCACGCGGGTAGCGTCACCGCTTAAACCCTCCACCGCGCGCCCTGTTCAATTGGCAATCTGTTCCAGTACTCCAACTACGGCTCCCCGTTTCCCTTCCTCACCGGCAACCACCTCAGCCTGGGCGATGAGGAAACGTACATCGCGGACTGGACGCATCCTCAAGCAGTACGCCGTGATGGAGTTCCACGCGGAGGAGCAGGAGCGGAACCAGTACCACCAGCAGCAGCTGCTCCAGGG]

[+] EMBL AL930157             [GCCGAGGATATGAGCACGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACCACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATCCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGTTTACTTTCCCCGCCCGACGGTACCGTCCGTGGCGTACGGCTCCTCGCCACCCGCTCCTCCGTCCTTCTACCGTCCACAGCACGGCGCCATCGCCCCGTACAGCCATGGCCTCACGCGGGTAGCGTCACCGCTTAAACCCTCCACCGCGCGCCCTGTTCAATTGGCAATCTGTTCCAGTACTCCAACTACGGCTCCCCGTTTCCCTTCCTCACCGGCAACCACCTCAGCCTGGGCGATGAGGAAACGTACATCGCGGACTGGACGCATCCTCAAGCAGTACGCCGTGATGGAGTTCCACGCGGAGGAGCAGGAGCGGAACCAGTACCACCAGCAGCAGCTGCTCCAGGG]




>consensus_2436#1
GCCGAGGATATGAGCACGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTAC
CACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGAT
CCTTTGCTGAGCGTCACCGATCCCACCCACTCCGCCGTTTACTTTCCCCGCCCGACGGTA
CCGTCCGTGGCGTACGGCTCCTCGCCACCCGCTCCTCCGTCCTTCTACCGTCCACAGCAC
GGCGCCATCGCCCCGTACAGCCATGGCCTCACGCGGGTAGCGTCACCGCTTAAACCCTCC
ACCGCGCGCCCTGTTCAATTGGCAATCTGTTCCAGTACTCCAACTACGGCTCCCCGTTTC
CCTTCCTCACCGGCAACCACCTCAGCCTGGGCGATGAGGAAACGTACATCGCGGACTGGA
CGCATCCTCAAGCAGTACGCCGTGATGGAGTTCCACGCGGAGGAGCAGGAGCGGAACCAG
TACCACCAGCAGCAGCTGCTCCAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2436#0      GGCGCTCTCGTGTGTCGCGTGCAGTGAAGTGAAGTTGCAGCCAGACAGGCAGTGAGAGTG 60
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      GATCGGTTTTAGCGCGCCCCCCCCGTGGATAGCGGTGCTGCTAGGCAGTGTGTTTGTGGA 120
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      TCGTGCGTGTGTGACAAATCTGACAACCCAAGATCATTCTTTTGGCCCAATTTGTTTGGA 180
consensus_2436#1      ------------------GCCGAGGA--TATGAGCACGTTAGCGACATGCTTTCTCCTGT 40
                                         * **  *   * ** **   *   * *    *** *   * 

consensus_2436#0      TGTGCGTGTGCAATTGGAAAATGAACCGCTGTGACTTGAGAGAATCATTCCGACGAAAGT 240
consensus_2436#1      TCCTTTTG-GTACTTGCCTACCACGGCGCTGT--CTCGGCGAAAGGAATCAAGCAGAAGC 97
                      *     ** * * ***   *      ******  ** *    **  * **   *  *** 

consensus_2436#0      GAACCTTCTGAGTGCCAACAGAACCCCAATTCTTGTGTGATCTTGAGCGCGAGTTCTGAG 300
consensus_2436#1      GGCTCGTCATCGATCTGAGAGATCCT---TTGCTGAGCGTCACCGATCCCACCCACTCCG 154
                      *   * **   *  *  * *** **    **  ** * *     ** * *     **  *

consensus_2436#0      CACTTACAATGCAATGCAGCCGATGATCGAGTGATAAAGTGTCAAAGTTCAGTTCCTCAA 360
consensus_2436#1      CCGTTTACTTTCCCCGC--CCGACGGTACCGTCC----GTGGC---GTACGGCTCCTCGC 205
                      *  **    * *   **  **** * *   **      *** *   ** * * *****  

consensus_2436#0      AAAACACTTACACCATCTTCAGATCGAGTCCACCTAGCCTAGGATCGCATTCCCTGTCCC 420
consensus_2436#1      CACCCGCTC-CTCCGTCCTTCTACC--GTCCAC--AGC--ACGGCGCCATCGCCCCGTAC 258
                       *  * **  * ** ** *   * *  ******  ***  * *    ***  **     *

consensus_2436#0      TGCTGTCGCTGCTGACCCTGTCATCTTC-CTTCCAACATCCTGACCATCCCTCGCTGGGC 479
consensus_2436#1      AGCCATGGC--CTCACGCGGGTAGCGTCACCGCTTAAACCCT--CCACCGCGCGCCCTG- 313
                       **  * **  ** ** * *  * * ** *  *  * * ***  *** * * ***   * 

consensus_2436#0      ACCTCATAATGCCACCGTTAGCGACATGCTTTCTCCTGTTCCTTTTGGTACTTGCCTACC 539
consensus_2436#1      --TTCAATTGGCAATCTGTTCCAGTACTCCAACTACGGCTCCCCGTTTCCCTTCCTCACC 371
                         ***    ** * *  *  *   *  *   ** * * ***   *    *** *  ***

consensus_2436#0      ACGGCGCTGTCTCGGCGAAAGGAATCAAGCAGAAGCGGCTCGTCATCGATCTGAGAGATC 599
consensus_2436#1      G-GCAACCACCTCAGCCTGGGCGATGA---GGAAACG-TACATCGCGGACTGGACGCATC 426
                        *   *   *** **    *  ** *    *** **   * **   **   **   ***

consensus_2436#0      CTTT-GCTGAGCGTCACCGATCCCACCCACTCCGCCGNTTACTTTCCCGCCCGACGGTAC 658
consensus_2436#1      CTCAAGCAGTACGCCGTGATGGAGTTCCACGCGGAGGAGCAGGAGCGGAACCA---GTAC 483
                      **   ** *  ** *           **** * *  *   *    *    **    ****

consensus_2436#0      CGTCCGTGGCGTACGGGTCCTCGNCACCCGCTCCTCCGTCCTTCTA 704
consensus_2436#1      CACCAGCAGCA-GCTGCTCCAGGG---------------------- 506
                      *  * *  **   * * ***  *