These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [CCGCGCTGTCCTGTTCCGTTCTGGTTTGAATGCAAACGGATTCGGTTGGTGGTGGATACTGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAACATTCTATTCTTTAACCATTATTTATGCTTTGTTTTTATATTGTCTTCGTTTTGTTAATGCCTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAGCGCGGAGGGGCGGGCGGTGAGAAAGTCCGACTGTTGCTTTTATAAAAGTCTGGCCCACCCCACCATACACCAACCTGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAGTTTGTAAGACACAAAAGCAAAACAAGTGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGCGGATAATGAACAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCCGGAGGACGTAAGCTGATAGGAAATGGAAGCAAATCTGTGGCGGGGAAATACATGTGTTTTGTTTTTTGCATCACGGTAATTCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAACAGCGGGAATATAGCGGGGCAACAAAGATGCAATAGATACACCCGTTTGTTTATCCATTAACTGTGTAATCCTTCGTGCT] [+] EMBL BX613531 [CCGCGCTGTCCTGTTCCGTTCTGGTTTGAATGCAAACGGATTCGGTTGGTGGTGGATACTGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAACATTCTATTCTTTAACCATTATTTATGCTTTGTTTTTATATTGTCTTCGTTTTGTTAATGCCTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAGCGCGGAGGGGCGGGCGGTGAGAAAGTCCGACTGTTGCTTTTATAAAAGTCTGGCCCACCCCACCATACACCAACCTGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAGTTTGTAAGACACAAAAGCAAAACAAGTGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGCGGATAATGAACAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCCGGAGGACGTAAGCTGATAGGAAATGGAAGCAAATCTGTGGCGGGGAAATACATGTGTTTTGTTTTTTGCATCACGGTAATTCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAACAGCGGGAATATAGCGGGGCAACAAAGATGCAATAGATACACCCGTTTGTTTATCCATTAACTGTGTAATCCTTCGTGCT] consensusID : consensus_2447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCGGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAATTAACACTCTATTCTTTAACCATTATTTATGCTTTGTTTTTTTTATTGTCTTCGTTTTGTTAATGCCTTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAATGCGGAGGGGCGGGGGTGAGAAAGTCTGGCTATTGCTTTTTTAGAGGTCCTGGCTCAACCCCCCCCCCCCCCCCATAAACCGACCGGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAATTTGTAAGACACAAAAGCAAAACAAATGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGTGGATAATGAACAAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCCGGAGGACGTAACCTGAAATAATAAATAAATGTGTTTTGTTTTTTGCATCACGGTAATCCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAAC] [+] EMBL BM596104 [CCGGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAATTAACACTCTATTCTTTAACCATTATTTATGCTTTGTTTTTTTTATTGTCTTCGTTTTGTTAATGCCTTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAATGCGGAGGGGCGGGGGTGAGAAAGTCTGGCTATTGCTTTTTTAGAGGTCCTGGCTCAACCCCCCCCCCCCCCCCATAAACCGACCGGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAATTTGTAAGACACAAAAGCAAAACAAATGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGTGGATAATGAACAAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCCGGAGGACGTAACCTGAAATAATAAATAAATGTGTTTTGTTTTTTGCATCACGGTAATCCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2447#0 CCGCGCTGTCCTGTTCCGTTCTGGTTTGAATGCAAACGGATTCGGTTGGTGGTGGATACT 60 consensus_2447#1 ---------------------------------------------------------CCG 3 * consensus_2447#0 GATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAA----CA 116 consensus_2447#1 GATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAATTAACA 63 ****************************************************** ** consensus_2447#0 TTCTATTCTTTAACCATTATTTATGCTTTGTTTTTAT-ATTGTCTTCGTTTTGTTAATGC 175 consensus_2447#1 CTCTATTCTTTAACCATTATTTATGCTTTGTTTTTTTTATTGTCTTCGTTTTGTTAATGC 123 ********************************** * ********************** consensus_2447#0 CTTTTTT-GTGCTACGTTTTGTTGGTTGATGTAGCCAAATAGCGCGGAGGGGCGGGCGGT 234 consensus_2447#1 CTTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAATGCGGAGGGGCGGG-GGT 182 ******* ********************************* ************* *** consensus_2447#0 GAGAAAGTCCGACTGTTGCTTTTATAAAAGTC-TGGCCCA----------CCCCACCATA 283 consensus_2447#1 GAGAAAGTCTGGCTATTGCTTTTTTAGAGGTCCTGGCTCAACCCCCCCCCCCCCCCCATA 242 ********* * ** ******** ** * *** **** ** **** ***** consensus_2447#0 CACCAACCTGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGT 343 consensus_2447#1 AACCGACCGGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGT 302 *** *** *************************************************** consensus_2447#0 GTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAGTTTGTAAGACACA 403 consensus_2447#1 GTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAATTTGTAAGACACA 362 ********************************************** ************* consensus_2447#0 AAAGCAAAACAAGTGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTAT 463 consensus_2447#1 AAAGCAAAACAAATGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTAT 422 ************ *********************************************** consensus_2447#0 TATTGGCGGATAATGAACAAAAAAAAAA-GAAGCTAAATAAAGAGCTAAAAAGGGATGAA 522 consensus_2447#1 TATTGGTGGATAATGAACAAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAA 482 ****** ********************* ******************************* consensus_2447#0 ACTGAAACAGGCCACTCCGGAGGACGTAAGCTGATAGGAAATGGAAGCAAATCTGTGGCG 582 consensus_2447#1 ACTGAAACAGGCCACTCCGGAGGACGTAACCTGA-----AAT-------AAT-------- 522 ***************************** **** *** *** consensus_2447#0 GGGAAATACATGTGTTTTGTTTTTTGCATCACGGTAATTCTTGTATATGTTGTCTACTAT 642 consensus_2447#1 ---AAATAAATGTGTTTTGTTTTTTGCATCACGGTAATCCTTGTATATGTTGTCTACTAT 579 ***** ***************************** ********************* consensus_2447#0 CACTAGAACCAGACAGAAAACAGCGGGAATATAGCGGGGCAACAAAGATGCAATAGATAC 702 consensus_2447#1 CACTAGAACCAGACAGAAAAC--------------------------------------- 600 ********************* consensus_2447#0 ACCCGTTTGTTTATCCATTAACTGTGTAATCCTTCGTGCT 742 consensus_2447#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||