These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [CGCCCGAGGTTTAAGATAGTTCCTGGATTACTTTTCCGTTTAAAAGTTTAATCTTTACATTCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAACTGTGCCAAGGAGTGAGACAGGCGATTGCTTTCTTCGTTTTATAACTCTGTTTTTTTCTTGGGAAATTATGTATAGATAGTTTAGTAGCCGACGCCCTCTGGTGTTTTTGCTCACCAATGTATAGTGCTCCATTGAATTTGTTTGTACCAATAATACTCATCTCACACACACTCACATGCTCGGCTACTACACACATACGCACAAGGCAAGGATCGAGTTGGTGTGGCCGAAGTAGAGCGAGTTGTTGANCGATAGATTTANAAAAAAATCAATCAAAACAAAACAAAAAAGTANCAACGAAACACCTANGCTTNCAGTGCTCAACTGACACCCTGTACAGAAAACCGCATGTGGTGGAGTGTTTGTACAATAAAAGGAATCCGTATCATATATCCTGCACATCCTGCTCAAANGACCCCCNTCCCGGACCAAACACCTTGGGGACATGGACCAAACGGACTGGACACNTNGCGAAGCACCAGGAAAAAACGGGANAAAACACAANAANTCAAGACACCACAGGCCTGGAAGGCGCGAAAACAAACAACCACAAAACNCGCAACGGCCGAACCAAACAGGTCGAGNGACCCGANCCAACGAACGGGAAACANGGACANAGAGACCACNAG] [+] EMBL AL930295 [CGCCCGAGGTTTAAGATAGTTCCTGGATTACTTTTCCGTTTAAAAGTTTAATCTTTACATTCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAACTGTGCCAAGGAGTGAGACAGGCGATTGCTTTCTTCGTTTTATAACTCTGTTTTTTTCTTGGGAAATTATGTATAGATAGTTTAGTAGCCGACGCCCTCTGGTGTTTTTGCTCACCAATGTATAGTGCTCCATTGAATTTGTTTGTACCAATAATACTCATCTCACACACACTCACATGCTCGGCTACTACACACATACGCACAAGGCAAGGATCGAGTTGGTGTGGCCGAAGTAGAGCGAGTTGTTGANCGATAGATTTANAAAAAAATCAATCAAAACAAAACAAAAAAGTANCAACGAAACACCTANGCTTNCAGTGCTCAACTGACACCCTGTACAGAAAACCGCATGTGGTGGAGTGTTTGTACAATAAAAGGAATCCGTATCATATATCCTGCACATCCTGCTCAAANGACCCCCNTCCCGGACCAAACACCTTGGGGACATGGACCAAACGGACTGGACACNTNGCGAAGCACCAGGAAAAAACGGGANAAAACACAANAANTCAAGACACCACAGGCCTGGAAGGCGCGAAAACAAACAACCACAAAACNCGCAACGGCCGAACCAAACAGGTCGAGNGACCCGANCCAACGAACGGGAAACANGGACANAGAGACCACNAG] consensusID : consensus_2452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGTTTTATTTCTCACTGTTCTTTTCCAATTTCAAACACCATAAGCATCAGTTTTTGGGAGGGGGCAAATTGTGTGAAAAATTTGTGTACATTTGACATACGATTCTAAAGTATAAATAATCCCAAGCTCTATCTATATAACTCTGTTTGTTTTGCGGTGGGCAAACCATTGCTTGAGCTTGTACGTTTCTCTGTTATTCGATTATCTGAGCTATTTGTCTTAATTTGCCTCTAAAGTACATTGTAATCATTCTCCTATAATCATTTGTTGACTGCTTGCTAATCGAATAAAAGAGTAAGAAGCTGAAAGAGAGATTAGCACGACACAGAAGTAGAAAAAGTAGAAATATATTATACTATATAAAGAAATTAAAAAACAAATACACATTAGCTTCATCATAAGGGGAAGAGTATAAGAACAGCACAAGAAAAGTTCACCGTTATATATTTCGCATCACCTAAACTGGTAAAGATAGTTCCTGGATTATTTTTCCGTTTAAAAGTTTTAATCTTTATATTCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAACTGTGCCAAGGGAGTGAGACAGGCGATGGCTTTTTTTTTTCTTCG] [+] EMBL BM589055 [CCGTTTTATTTCTCACTGTTCTTTTCCAATTTCAAACACCATAAGCATCAGTTTTTGGGAGGGGGCAAATTGTGTGAAAAATTTGTGTACATTTGACATACGATTCTAAAGTATAAATAATCCCAAGCTCTATCTATATAACTCTGTTTGTTTTGCGGTGGGCAAACCATTGCTTGAGCTTGTACGTTTCTCTGTTATTCGATTATCTGAGCTATTTGTCTTAATTTGCCTCTAAAGTACATTGTAATCATTCTCCTATAATCATTTGTTGACTGCTTGCTAATCGAATAAAAGAGTAAGAAGCTGAAAGAGAGATTAGCACGACACAGAAGTAGAAAAAGTAGAAATATATTATACTATATAAAGAAATTAAAAAACAAATACACATTAGCTTCATCATAAGGGGAAGAGTATAAGAACAGCACAAGAAAAGTTCACCGTTATATATTTCGCATCACCTAAACTGGTAAAGATAGTTCCTGGATTATTTTTCCGTTTAAAAGTTTTAATCTTTATATTCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAACTGTGCCAAGGGAGTGAGACAGGCGATGGCTTTTTTTTTTCTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2452#0 CGCCCGAGGTTTAAGATAGTTCCTGGATTACTTTTCCGTTTAAAAGTTTAATCTTTACAT 60 consensus_2452#1 -----------------------------------CCGTTTTATTTCTCACTGTTCTTTT 25 ****** * * * * ** * consensus_2452#0 TCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTT 120 consensus_2452#1 CCAATTTCAAACACCATAAGCATCAGTTTTTGGGAGGGGGCAAATTGTGTGAAAAATTTG 85 * *** * * ** * * * * * * ** ** **** consensus_2452#0 TAC-CATATAGCGTAAAGTGAACTGTGCCAAGGAGTGAGACAGGCGATTGCTTTCTTCGT 179 consensus_2452#1 TGTACATTTGACATA-------CGATTCTAAAGTAT-AAATAATCCCAAGCTCTATC--- 134 * *** * * ** * * * ** * * * * * * *** * * consensus_2452#0 TTTATAACTCTGTTTTTTTCTTGGGAAATTATGTATAGATAGTTTAGTAGCCGACGCCCT 239 consensus_2452#1 TATATAACTCTGTTTGTTTTGCGG-----------TGGGCAAACCATTGCTTGA-GCTTG 182 * ************* *** ** * * * * * ** ** consensus_2452#0 CTGGTGTTTTTGCTCACCAATGTATAGTGCTCCATTGAATTTGTTTGTACCAATAATACT 299 consensus_2452#1 TACGTTTCTCTGTTATTCGATTATCTGAGCTAT-TTGTCTTAATTTGCCTCTAAAGTAC- 240 ** * * ** * * ** * *** *** ** **** * * * *** consensus_2452#0 CATCTCACACACACTCACATGCTCGGCTACTACACACATACGCACAAGGCAAGGATCGAG 359 consensus_2452#1 -ATTGTAATCATTCTCCTATAATCATTTGTTGACTGCTTGCTAATCGAATAAAA---GAG 296 ** * ** *** ** ** * * * * * * ** *** consensus_2452#0 TTGGTGTGGCCGAAGTAGAGCGAGTTGTTGANCGATAGATTTANAAAAAAATCAATCAAA 419 consensus_2452#1 TAAGA--AGCTGAAAGAGAG---ATTAGCACGACACAGAAGTAGAAAAAGTAGAAATATA 351 * * ** *** **** ** * *** ** ***** ** * * consensus_2452#0 ACAAAACAAA-AAAGTANCAACGAAACACCTANGCTTNCAGTGC-TCAACTGACACCCTG 477 consensus_2452#1 TTATACTATATAAAGAAATTAAAAAACAAATACACATTAGCTTCATCATAAGGGGAAGAG 411 * * * * **** * * ***** ** * * * * *** * * consensus_2452#0 TACAGAAAACCGCATGTGGTGGAGTGTTTGTACAATAAAAGGAATCCGTATCATATATCC 537 consensus_2452#1 TATA-AGAACAGCACAAGAAAAGTTCACCGTTATATAT------TTCGCATCACCTAAAC 464 ** * * *** *** * * ** *** * ** **** ** * consensus_2452#0 TGCACATCCTGCTCAAANGACCCCCNTCCCGGACCAAACACCTTGGGGACATGGACCAAA 597 consensus_2452#1 TGGTAAAGATAGTTCCTGGATTATTTTTCCGTTTAAAAGTTTTAATCTTTATATTCGGTT 524 ** * * * ** * *** *** * ** * consensus_2452#0 CG-GACTGGACACNTNGCGAAGCACCAGGAAAAAACGGGANAAAACACAANAANTCAAGA 656 consensus_2452#1 TATGAAAGTTTATGTTATGTAACATTGTGGAAGAA--ATTTTAAACAAACCATTTT---- 578 ** * * * * * ** * ** ** ***** * * * consensus_2452#0 CACCACA-GGCCTGGAAGGCGCGAAAACAAACAACCACAAAACNCGCAACGGCCGAACCA 715 consensus_2452#1 TACCATATAGCGTAAAGTGAACTGTGCCAAGGGA--GTGAGACAGGCGATGGCTTTTTTT 636 **** * ** * * * * *** * * ** ** * *** consensus_2452#0 AACAGGTCGAGNGACCCGANCCAACGAACGGGAAACANGGACANAGAGACCACNAG 771 consensus_2452#1 TTTCT-TCG----------------------------------------------- 644 *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||