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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[ATNGCCCCGAGGTTNGGGTTTGAAGTGGTGCTACGATCAGAGATTTGNTGTGCGAGAAGTTGTGACTTTGTGCACATTGCCGGGTACGATCTGTGCGGCTCGTGGACCGGCTTTGCCGATGTGCACAGCCCGATGACGGATTGGCCGCACGATCAGTGGCATCTACAAGGGGCTGAACGTGCGGGCTGTGGCTGTTGAAGTCTGTTGTGCTCTGCTGAGCTGGATGCTGCCCCTGTGAACTGGGTCTGTGCTGGGGNGTACCTGTTCCTCGGTGGCTGTACTGTACACGCTGCGCAACATGTCATGCAGAACTGTGTCTCGGTGCGTGTGACTGACCTGGCCCTGTGTCCGAAGGGTCAGCATACGTATATGTGCTTGGCTATCTGGGGTACTTCGAGATCTTGCCAGAAGCTTGAATGTGCTTGAACTGTAACTGGCTGCACGGTTTTGGGACCGCGATCTGGGCAGTGTCCTGTACGCTGTACCGGGGCAACCAGTGGATCNGGTACCGAGAACGAAGGAGTCGCTGACGTGACGCAAAGGTCGACGATTGGGTCGACACGAAGCAAAAGGAGCTTNGNCCAGCAGCGNTCCTANTNGCCGTTCTTCCTGCTTCGAATTCTTGTGACCGACACTAATCTGGGGGCAAAGTTGGCNTGTTGNGCAGATAACCCGGTACCCCGCTATAATTGCGCGACCGCCTAGGCGGCGTATAGGGGAANGAAAAAANCACAACAAGCCGTAACATACAGGGTACTAGCGGNTCCAGAAGCCAGAGGCNCGAATGAATAAC]
[+] EMBL AL930296 [ATNGCCCCGAGGTTNGGGTTTGAAGTGGTGCTACGATCAGAGATTTGNTGTGCGAGAAGTTGTGACTTTGTGCACATTGCCGGGTACGATCTGTGCGGCTCGTGGACCGGCTTTGCCGATGTGCACAGCCCGATGACGGATTGGCCGCACGATCAGTGGCATCTACAAGGGGCTGAACGTGCGGGCTGTGGCTGTTGAAGTCTGTTGTGCTCTGCTGAGCTGGATGCTGCCCCTGTGAACTGGGTCTGTGCTGGGGNGTACCTGTTCCTCGGTGGCTGTACTGTACACGCTGCGCAACATGTCATGCAGAACTGTGTCTCGGTGCGTGTGACTGACCTGGCCCTGTGTCCGAAGGGTCAGCATACGTATATGTGCTTGGCTATCTGGGGTACTTCGAGATCTTGCCAGAAGCTTGAATGTGCTTGAACTGTAACTGGCTGCACGGTTTTGGGACCGCGATCTGGGCAGTGTCCTGTACGCTGTACCGGGGCAACCAGTGGATCNGGTACCGAGAACGAAGGAGTCGCTGACGTGACGCAAAGGTCGACGATTGGGTCGACACGAAGCAAAAGGAGCTTNGNCCAGCAGCGNTCCTANTNGCCGTTCTTCCTGCTTCGAATTCTTGTGACCGACACTAATCTGGGGGCAAAGTTGGCNTGTTGNGCAGATAACCCGGTACCCCGCTATAATTGCGCGACCGCCTAGGCGGCGTATAGGGGAANGAAAAAANCACAACAAGCCGTAACATACAGGGTACTAGCGGNTCCAGAAGCCAGAGGCNCGAATGAATAAC]
consensusID : consensus_2453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CGTGGACCGGCTTTGCCGATGTGCACAGCCCGATGACGGATCGGCCGCACGATCAGGGCATCTACAAGGGGCTGAACGTGCGGGCGGGCGTTGAGTCGTGGCTCGCGAGCGGATGCGCCCCGGAACGGGTCGTGCTGGGGGTACCGTTCCTCGGGCGTACGTACACGCTGCGCAACAGTCAGCAGAACGGTCTCGGTGCGGTGACGACCGGCCCTGGTCCGAAGGGTCAGCATACGTATAGTGCGGGCTATCTGGGGTACTTCGAGATCTGCCAGAAGCTGAAGGCTGAACGTAACTGGCGCACGGTTTGGGACGCGATCGGGCAGTGTCCGTACGCGTACCGGGGCAACCAGTGGATCGGGTACGAGAACGAGGAGTCGCTGAAGGAGAAGGTCGAGTTGGTGAAGAGCAAAGAGCTGGCCGGCGTCTATGCGTTCTCGCTCGATCTGGACGACTATCGGGGCAAGTGCGGTGGCGAACCGTACCCGCTTATGCGGACGCTGGCGGGCTTGCTGAAGAAAGAGCACCAAAGCGTAATCGGGTTCGCGTTCGAGCGGGGTGATGATAAGTGAAGCGGGAGAGAGTGAGAGCGAGGGATTACATTTAAGTTAGTAACGTTAACGAAAAGCAACAAGTAGGTGTTCCTAACAGCTGCACGGTATTTAAATAAATGCTTATT]
[+] EMBL BX613399 [CGTGGACCGGCTTTGCCGATGTGCACAGCCCGATGACGGATCGGCCGCACGATCAGGGCATCTACAAGGGGCTGAACGTGCGGGCGGGCGTTGAGTCGTGGCTCGCGAGCGGATGCGCCCCGGAACGGGTCGTGCTGGGGGTACCGTTCCTCGGGCGTACGTACACGCTGCGCAACAGTCAGCAGAACGGTCTCGGTGCGGTGACGACCGGCCCTGGTCCGAAGGGTCAGCATACGTATAGTGCGGGCTATCTGGGGTACTTCGAGATCTGCCAGAAGCTGAAGGCTGAACGTAACTGGCGCACGGTTTGGGACGCGATCGGGCAGTGTCCGTACGCGTACCGGGGCAACCAGTGGATCGGGTACGAGAACGAGGAGTCGCTGAAGGAGAAGGTCGAGTTGGTGAAGAGCAAAGAGCTGGCCGGCGTCTATGCGTTCTCGCTCGATCTGGACGACTATCGGGGCAAGTGCGGTGGCGAACCGTACCCGCTTATGCGGACGCTGGCGGGCTTGCTGAAGAAAGAGCACCAAAGCGTAATCGGGTTCGCGTTCGAGCGGGGTGATGATAAGTGAAGCGGGAGAGAGTGAGAGCGAGGGATTACATTTAAGTTAGTAACGTTAACGAAAAGCAACAAGTAGGTGTTCCTAACAGCTGCACGGTATTTAAATAAATGCTTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2453#0 ATNGCCCCGAGGTTNGGGTTTGAAGTGGTGCTACGATCAGAGATTTGNTGTGCGAGAAGT 60
consensus_2453#1 ------------------------------------------------------------
consensus_2453#0 TGTGACTTTGTGCACATTGCCGGGTACGATCTGTGCGGCTCGTGGACCGGCTTTGCCGAT 120
consensus_2453#1 ----------------------------------------CGTGGACCGGCTTTGCCGAT 20
********************
consensus_2453#0 GTGCACAGCCCGATGACGGATTGGCCGCACGATCAGTGGCATCTACAAGGGGCTGAACGT 180
consensus_2453#1 GTGCACAGCCCGATGACGGATCGGCCGCACGATCAG-GGCATCTACAAGGGGCTGAACGT 79
********************* ************** ***********************
consensus_2453#0 GCGGGCTGTGGCTGTTGAAGTCTGTTGTGCTCTGCTGAGCTGGATGCTGCCCCTGTGAAC 240
consensus_2453#1 GCGGGC---GGGCGTTGA-----GTCGTGGCTCGC-GAGC-GGATGC-GCCCC---GGAA 125
****** ** ***** ** *** ** **** ****** ***** * *
consensus_2453#0 TGGGTCTGTGCTGGGGNGTACCTGTTCCTCGGTGGCTGTACTGTACACGCTGCGCAACAT 300
consensus_2453#1 CGGGTC-GTGCTGGGGG-TACC-GTTCCTCGG---GCGTAC-GTACACGCTGCGCAACA- 177
***** ********* **** ********* **** *****************
consensus_2453#0 GTCATGCAGAACTGTGTCTCGGTGCGTGTGACTGACCTGGCCCTGTGTCCGAAGGGTCAG 360
consensus_2453#1 GTCA-GCAGAACGGT--CTCGGTGCG-GTGAC-GACC-GGCCCTG-GTCCGAAGGGTCAG 230
**** ******* ** ********* ***** **** ******* **************
consensus_2453#0 CATACGTATATGTGCTTGGCTATCTGGGGTACTTCGAGATCTTGCCAGAAGCTTGAATGT 420
consensus_2453#1 CATACGTATA-GTGCG-GGCTATCTGGGGTACTTCGAGATCT-GCCAGAAGCTGAA---- 283
********** **** ************************* ********** *
consensus_2453#0 GCTTGAACTGTAACTGGCTGCACGGTTTTGGGACCGCGATCTGGGCAGTGTCCTGTACGC 480
consensus_2453#1 GGCTGAAC-GTAACTGGC-GCACGGTTT--GGGACGCGATC-GGGCAGTGTCC-GTACGC 337
* ***** ********* ********* ** ******* *********** ******
consensus_2453#0 TGTACCGGGGCAACCAGTGGATCNGGTACCGAGAACGAAGGAGTCGCTGACGTGACGCAA 540
consensus_2453#1 -GTACCGGGGCAACCAGTGGATCGGGTAC-GAGAACGA-GGAGTCGCTGAAG----GAGA 390
********************** ***** ******** *********** * * *
consensus_2453#0 AGGTCGACGATTGGGTCGACACGAAGCAAAAGGAGCTTNGNCCAGCAGCGNTCCTANTNG 600
consensus_2453#1 AGGTCGAGTTGGTGAAGAGCAAAGAGCTGGCCGGCGTCTATGCGTTCTCGCTCGATCTGG 450
******* * ** *** * * * ** ** * *
consensus_2453#0 CCGTTCTTCCTGCTTCGAATTCTTGTGACCGACACTAATCTGGGGGCAAAGTTGGCNTGT 660
consensus_2453#1 ACGACTATCGGGGCAAGTGCGGTGGCGAACCGTACCCGCTTATGCG-GACGCTGGCGGGC 509
** ** * * * * ** * ** * * * * * **** *
consensus_2453#0 TGNGCAGATAACCCGGTACCCCGCTATAATTGCGCGACCGCCTAGGCGGCGT----ATAG 716
consensus_2453#1 T-TGCTGAAGAAAGAGCACCAAAGCGTAATCGGGTTCGCGTTCGAGCGGGGTGATGATAA 568
* ** ** * * *** **** * * ** **** ** ***
consensus_2453#0 GGGAAN---GAAAAAANCACAACAAGCCGTAACATACAGGGTACTAGCGGNTCC-AGAAG 772
consensus_2453#1 GTGAAGCGGGAGAGAGTGAGAGCGAGGGATTACATTTAAGTTAGTAACGTTAACGAAAAG 628
* *** ** * * * * * ** * **** * * ** ** ** * * ***
consensus_2453#0 CCAGAGGCNCGAATGAATAAC------------------------------ 793
consensus_2453#1 CAACAAGTAGGTGTTCCTAACAGCTGCACGGTATTTAAATAAATGCTTATT 679
* * * * * * ****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||