These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAATGGCCATATCCGTCTTGCTTTGCTAATGTTATTTAACTAGAAGGGATAGTAAAGCATGGAAGGAGAAGTGATACTACCTGCCGCCTGTCGCTGCTGTCTGCTGGAAGACAAGGATATGGTCTATGTGTTCGACATTTTGGATGAATTTGAAATGAAAATCAGCGATCTAATCAGTCGAAATGGAGCAATAGAGATACAAGAACGTGACGCCTTTTCCAAGCACATCTGTGGCAACTGTCTAAACGATCTGGCAATAGCTGAGCGTTTTGTGTTGCGCTGCCGCAAAACCAACGATCTGCTGATGAATCTTATCACAAGCGATGCACAGGAAGATGCGGACGCGCTGGTGGTAAGGGATGACACACTTTCCGAGACGTACCCGGAGGATGATGTATCTTACGTGGTTGAGGCATCCGAAGGCCAAGCAGCTTTGTATGAAGAAATCACCTTGGCGGAAGTGCAGTCCATCGACAGTTCCGAACACTACGACGAGGAACCACCGAAAGTATTTGTGACGCAAAAAGCCGGTAGTTCACAAATAGCCGGTGATACGTTGTTACAGCTGCAACATCAATCAACCGTTCCTGTGGAGCAGTCTATGGAAGAGACGGTACAAGTGCAGCTGGATTATGAGCATGAAACGATG] [+] EMBL BM595995 [CCGCCCACGCGTCCGCCCACGCGTCCGAATGGCCATATCCGTCTTGCTTTGCTAATGTTATTTAACTAGAAGGGATAGTAAAGCATGGAAGGAGAAGTGATACTACCTGCCGCCTGTCGCTGCTGTCTGCTGGAAGACAAGGATATGGTCTATGTGTTCGACATTTTGGATGAATTTGAAATGAAAATCAGCGATCTAATCAGTCGAAATGGAGCAATAGAGATACAAGAACGTGACGCCTTTTCCAAGCACATCTGTGGCAACTGTCTAAACGATCTGGCAATAGCTGAGCGTTTTGTGTTGCGCTGCCGCAAAACCAACGATCTGCTGATGAATCTTATCACAAGCGATGCACAGGAAGATGCGGACGCGCTGGTGGTAAGGGATGACACACTTTCCGAGACGTACCCGGAGGATGATGTATCTTACGTGGTTGAGGCATCCGAAGGCCAAGCAGCTTTGTATGAAGAAATCACCTTGGCGGAAGTGCAGTCCATCGACAGTTCCGAACACTACGACGAGGAACCACCGAAAGTATTTGTGACGCAAAAAGCCGGTAGTTCACAAATAGCCGGTGATACGTTGTTACAGCTGCAACATCAATCAACCGTTCCTGTGGAGCAGTCTATGGAAGAGACGGTACAAGTGCAGCTGGATTATGAGCATGAAACGATG] consensusID : consensus_2457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CCGCGGACGCGTGGGCTGTCACAACAACCACATCACAAACCGCATCAAAGCATAAACAAACGCCGTGTCGACGCCGCGCCAGAACGTGTTTTTTTTTTTTTTTAACTAAAATAGTTAATTTGTGCTAATGGCCATATCCGTCTTGCTTTGCTAATGTTATTTAACTAGAAGGGATAGTAAAACATGGAAGGAGAAGTGATACTACCTGCCGCCTGTCGCTGCTGCCTGCTGGAAGACAAGGATATGGTCTATGTGTTCGACATTTTGGATGAATTTGAAATGAAAATCAGCGACCTAATCAGTCGAAATGGAGCAATAGAGATACAAGAACGTGACGCCTTTTCCAAGCACATCTGTGGCAACTGTCTAAACGATCTGGCAATAGCTGAGCGTTTTGTGTTGCGCTGCCGCAAAACCAACGATCTGCTGATGAATCTTATTACAAGCGATGCACAGGAAGATGCGGACGCGCTGGTGGGAAGGAATGACACACTTCCCGAGACGTACCCGGAGGATGATGTATCTTACGTGGTTGAGGCATCCCGAAAGCCAAGCAGCTTTGTATGAAAAAATCACCCTTGGCGGAAGAGCAATCCA] [+] EMBL BM610504 [CCGCGGACGCGTGGGCTGTCACAACAACCACATCACAAACCGCATCAAAGCATAAACAAACGCCGTGTCGACGCCGCGCCAGAACGTGTTTTTTTTTTTTTTTAACTAAAATAGTTAATTTGTGCTAATGGCCATATCCGTCTTGCTTTGCTAATGTTATTTAACTAGAAGGGATAGTAAAACATGGAAGGAGAAGTGATACTACCTGCCGCCTGTCGCTGCTGCCTGCTGGAAGACAAGGATATGGTCTATGTGTTCGACATTTTGGATGAATTTGAAATGAAAATCAGCGACCTAATCAGTCGAAATGGAGCAATAGAGATACAAGAACGTGACGCCTTTTCCAAGCACATCTGTGGCAACTGTCTAAACGATCTGGCAATAGCTGAGCGTTTTGTGTTGCGCTGCCGCAAAACCAACGATCTGCTGATGAATCTTATTACAAGCGATGCACAGGAAGATGCGGACGCGCTGGTGGGAAGGAATGACACACTTCCCGAGACGTACCCGGAGGATGATGTATCTTACGTGGTTGAGGCATCCCGAAAGCCAAGCAGCTTTGTATGAAAAAATCACCCTTGGCGGAAGAGCAATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2457#0 ------------------------------------------------------------ consensus_2457#1 CCGCGGACGCGTGGGCTGTCACAACAACCACATCACAAACCGCATCAAAGCATAAACAAA 60 consensus_2457#0 --------------------------------------CCGCCCAC-GCGTCCGCCCACG 21 consensus_2457#1 CGCCGTGTCGACGCCGCGCCAGAACGTGTTTTTTTTTTTTTTTAACTAAAATAGTTAATT 120 ** * * consensus_2457#0 CGTCCGAATGGCCATATCCGTCTTGCTTTGCTAATGTTATTTAACTAGAAGGGATAGTAA 81 consensus_2457#1 TGTGCTAATGGCCATATCCGTCTTGCTTTGCTAATGTTATTTAACTAGAAGGGATAGTAA 180 ** * ****************************************************** consensus_2457#0 AGCATGGAAGGAGAAGTGATACTACCTGCCGCCTGTCGCTGCTGTCTGCTGGAAGACAAG 141 consensus_2457#1 AACATGGAAGGAGAAGTGATACTACCTGCCGCCTGTCGCTGCTGCCTGCTGGAAGACAAG 240 * ****************************************** *************** consensus_2457#0 GATATGGTCTATGTGTTCGACATTTTGGATGAATTTGAAATGAAAATCAGCGATCTAATC 201 consensus_2457#1 GATATGGTCTATGTGTTCGACATTTTGGATGAATTTGAAATGAAAATCAGCGACCTAATC 300 ***************************************************** ****** consensus_2457#0 AGTCGAAATGGAGCAATAGAGATACAAGAACGTGACGCCTTTTCCAAGCACATCTGTGGC 261 consensus_2457#1 AGTCGAAATGGAGCAATAGAGATACAAGAACGTGACGCCTTTTCCAAGCACATCTGTGGC 360 ************************************************************ consensus_2457#0 AACTGTCTAAACGATCTGGCAATAGCTGAGCGTTTTGTGTTGCGCTGCCGCAAAACCAAC 321 consensus_2457#1 AACTGTCTAAACGATCTGGCAATAGCTGAGCGTTTTGTGTTGCGCTGCCGCAAAACCAAC 420 ************************************************************ consensus_2457#0 GATCTGCTGATGAATCTTATCACAAGCGATGCACAGGAAGATGCGGACGCGCTGGTGGTA 381 consensus_2457#1 GATCTGCTGATGAATCTTATTACAAGCGATGCACAGGAAGATGCGGACGCGCTGGTGGGA 480 ******************** ************************************* * consensus_2457#0 AGGGATGACACACTTTCCGAGACGTACCCGGAGGATGATGTATCTTACGTGGTTGAGGCA 441 consensus_2457#1 AGGAATGACACACTTCCCGAGACGTACCCGGAGGATGATGTATCTTACGTGGTTGAGGCA 540 *** *********** ******************************************** consensus_2457#0 TCC-GAAGGCCAAGCAGCTTTGTATGAAGAAATCACC-TTGGCGGAAGTGCAGTCCATCG 499 consensus_2457#1 TCCCGAAAGCCAAGCAGCTTTGTATGAAAAAATCACCCTTGGCGGAAGAGCAATCCA--- 597 *** *** ******************** ******** ********** *** **** consensus_2457#0 ACAGTTCCGAACACTACGACGAGGAACCACCGAAAGTATTTGTGACGCAAAAAGCCGGTA 559 consensus_2457#1 ------------------------------------------------------------ consensus_2457#0 GTTCACAAATAGCCGGTGATACGTTGTTACAGCTGCAACATCAATCAACCGTTCCTGTGG 619 consensus_2457#1 ------------------------------------------------------------ consensus_2457#0 AGCAGTCTATGGAAGAGACGGTACAAGTGCAGCTGGATTATGAGCATGAAACGATG 675 consensus_2457#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||