These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence [GCAGATCCCCCGAGGTTAAATATGTACATCCAGCAGCAGGCCAACGCAACGGCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCTGACGTTAGCATCCAGAAACCTGAGCTGCCAAAGGTGACGGTGGCAATGGCTGCCACCAGCCGGTGGTGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTTGCACTTAACTTCATTCATACGTTCCATACTTGTGTGTCCCCCCATATATATTTGTTCGTCCATACAATCATTTCCATTTCATTTAAATGCGTCGACGGTTNTAGTTAACTTCATGACAGCAGGGTTTAGAGTTTGTCAACCTGCTGCAGCAGACTGCGTTCATCACAGTTGTCAGTGGACAGCAAGAAGCAGTGGCACACCGAGAAGTGCAATGCGTTTCAGAGGTTCAAGTTAGTNTGTGAGCGAATTTTACACGCAATTTCNCATAATGAAGCGAACGTNCTGTGCAGAACATGACATACATACACACCATATCGTTCTAAGATTTCCTAAGCTCTGACTTTTACGAGTGAAACCCCCGCAAATGGATCGGGAGATTGCTANGTCTGGGATAAATTATANAACATAGTACTANNNGTATACAGGGTACGAATTGACACANTATCAGGAAACGTATGAGAGACAGCCGCGAAAAAAACAAAACAACCAAACCAGGCNNTGTATGCGGACCGNACAAGCTCTATTCCCCATNATAANATGAGGGGTNAATTCATAAAGCATTGGACACTGGCCGTACGATATNCAACAACNGTCAGATGACTGNG] [+] EMBL AL930358 [GCAGATCCCCCGAGGTTAAATATGTACATCCAGCAGCAGGCCAACGCAACGGCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCTGACGTTAGCATCCAGAAACCTGAGCTGCCAAAGGTGACGGTGGCAATGGCTGCCACCAGCCGGTGGTGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTTGCACTTAACTTCATTCATACGTTCCATACTTGTGTGTCCCCCCATATATATTTGTTCGTCCATACAATCATTTCCATTTCATTTAAATGCGTCGACGGTTNTAGTTAACTTCATGACAGCAGGGTTTAGAGTTTGTCAACCTGCTGCAGCAGACTGCGTTCATCACAGTTGTCAGTGGACAGCAAGAAGCAGTGGCACACCGAGAAGTGCAATGCGTTTCAGAGGTTCAAGTTAGTNTGTGAGCGAATTTTACACGCAATTTCNCATAATGAAGCGAACGTNCTGTGCAGAACATGACATACATACACACCATATCGTTCTAAGATTTCCTAAGCTCTGACTTTTACGAGTGAAACCCCCGCAAATGGATCGGGAGATTGCTANGTCTGGGATAAATTATANAACATAGTACTANNNGTATACAGGGTACGAATTGACACANTATCAGGAAACGTATGAGAGACAGCCGCGAAAAAAACAAAACAACCAAACCAGGCNNTGTATGCGGACCGNACAAGCTCTATTCCCCATNATAANATGAGGGGTNAATTCATAAAGCATTGGACACTGGCCGTACGATATNCAACAACNGTCAGATGACTGNG] consensusID : consensus_2461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CCGCTCTACCAGTGCAGCGAAAATCGGTGAAACTAGCGACACCGAAAGTGCCGAAGTGAAGCAACCGATGACGAAAACCCAGCGCCTGAAGAACATTTTCGCCAAACGCTTGCAGCGTGGAGGTGGTGCCGGAACGAACGAACTGCCTGAAGAGATCGTCACCACCCCGGACGTAGCGGCCGTCGACGAGCAGGACACGAAGCCGTCCGATGGAGCGGGTAAACCGGCAAAGGACGATCAAACGCTGGTGTACGCCGAGCTGGAGCTAAAACCGGCCGCCGGGGAGATCTCGTTCGTCAACAAACCGCCAGCCGCCGTCAGCAACGAGTCGACCGAGTATGCCGAAATTATGTACATCCAGCAGCAGGCCAACGCAACGGCCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCGACGTTAGCATCCAGAAACCGAGCGCCAAAGGTGACGGTGGCAAGGCGCCACCAGCCGGGGGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTGCACTTAACTTCATTCATCGTTCCATACTGTGTGTCCCCCCATTTTTTGTTCGTCATACAA] [+] EMBL BM620343 [CCGCTCTACCAGTGCAGCGAAAATCGGTGAAACTAGCGACACCGAAAGTGCCGAAGTGAAGCAACCGATGACGAAAACCCAGCGCCTGAAGAACATTTTCGCCAAACGCTTGCAGCGTGGAGGTGGTGCCGGAACGAACGAACTGCCTGAAGAGATCGTCACCACCCCGGACGTAGCGGCCGTCGACGAGCAGGACACGAAGCCGTCCGATGGAGCGGGTAAACCGGCAAAGGACGATCAAACGCTGGTGTACGCCGAGCTGGAGCTAAAACCGGCCGCCGGGGAGATCTCGTTCGTCAACAAACCGCCAGCCGCCGTCAGCAACGAGTCGACCGAGTATGCCGAAATTATGTACATCCAGCAGCAGGCCAACGCAACGGCCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCGACGTTAGCATCCAGAAACCGAGCGCCAAAGGTGACGGTGGCAAGGCGCCACCAGCCGGGGGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTGCACTTAACTTCATTCATCGTTCCATACTGTGTGTCCCCCCATTTTTTGTTCGTCATACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2461#0 GCAGATCCCCCGAGGTTAAATATGTACATCCAGCAGCAGGCCAACGCAACGGCGGAAGCG 60 consensus_2461#1 ------------------------------------------------------CCGCTC 6 consensus_2461#0 AAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACA 120 consensus_2461#1 TACCAGTGCAGCGAAAA--TCGGTGAAACTAGCGACACCGAAAGTGCCGAAGTGAAG-CA 63 * ** ***** * ** * * ** ** ** * ** **** ** consensus_2461#0 ACCGTCCCGTGATCTGACGTTAGCATCCAGAAACCTGAGCTGCCAAAGGTGACGGTGGCA 180 consensus_2461#1 ACCG----ATGACGAAAACCCAGCGCCTGAAGAACATTTTCGCCAAA-----CGCTTGCA 114 **** *** * *** * * * * ****** ** * *** consensus_2461#0 ATGGCTGCCACCAGCCGGTGGTGCAAATAATCTGCTCGAA-ACCTCGCCGAATAAAGGGG 239 consensus_2461#1 GCG--TGGAGGTGGT-GCCGGAACGAACGAACTGCCTGAAGAGATCGTCACCACCCCGGA 171 * ** * * ** * ** * **** *** * *** * ** consensus_2461#0 GGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGA 299 consensus_2461#1 CGTAGCGGCCGTCGACGAGCAGGACACGAAGCCGTCC-----------GATGGAGCGGGT 220 * * ** * * ** ** * * * **** ** * * * * ** consensus_2461#0 GGAACAATAAGGCACGTTTTTGCACTTAACTTCATTCATACGTTCCATACTTGTGTGTCC 359 consensus_2461#1 AAACCGGCAAAGGACGATCAAACGCTGG--------TGTACG--CCGAGCTGGAGC---- 266 * * ** * *** * * ** **** ** ** * * consensus_2461#0 CCCCATATATATTTGTTCGTCCATACAATCATTTCCATTTCATTTAAATGCGTCGACGGT 419 consensus_2461#1 -------TAAAACCGGCCGCCGGGGAGATCTCGTTCGTC-------AACAAACCGCCAGC 312 ** * * ** * *** * * * ** ** * * consensus_2461#0 TNTAGTTAACTTCATGACAGCAGGGTTTA--GAGTTTGTCAACCTGCTGCAGCAGACTGC 477 consensus_2461#1 CGCCGTCAGCAACGAGTCGACCGAGTATGCCGAAATTATGTACATCCAGCAGCAGGC--- 369 ** * * * * * * * ** * ** ** * ** * * ******* * consensus_2461#0 GTTCATCACAGTTGTCAGTGGACAGCAAGAAGCAGTGGCACACCGAGAAGTGCAATGCGT 537 consensus_2461#1 ---CAACGCAACGGCCGG-AAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCA------AC 419 ** * ** * * * * * **** *** * ** ** consensus_2461#0 TTCAGAGGTTCAAGTTAGTNTGTGAGCGAATTTTACACGCAATTTCNCATAAT-GAAGCG 596 consensus_2461#1 CGCAGCAGC----GTCACCATTCGAGCGAAGACAAC------CGTCCCGTGATCGACGTT 469 *** * ** * * ******* ** ** * * ** ** * consensus_2461#0 AACGTNCTGTG-CAGAACATGACATACATACACACCATATCGTTCTAAGATTTCCTAAGC 655 consensus_2461#1 AGCATCCAGAAACCGAGCGCCAAAGGTGACGGTGGCAAGGCGCCACCAG-----CCGGGG 524 * * * * * * ** * * * ** ** ** * * consensus_2461#0 TCTGACTTTTACGAGTGAAACCCCCGCAAATGGATCGGGAGATTGCTANGTCTGGGATAA 715 consensus_2461#1 GCAAA-TAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAG--CCTACAAGA 581 * * * * * ****** * * *** * *** ** * * * * consensus_2461#0 ATTATANAACATAGTACTANNNGTATACAGGGTACGAATTGACACANTATCAGGAAACGT 775 consensus_2461#1 GGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATA---AGGCACGT 638 *** * ****** * * * ** * *** ** * **** consensus_2461#0 ATGAGAGACAGCCGCGAAAAAAACAAAACAACCAAACCAGGCNNTGTATGCGGACCGNAC 835 consensus_2461#1 TTTGCACTTAACTTC-----------ATTCATCGTTCCATACTGTGTGT-----CCCCCC 682 * * * * * * * * *** * *** * ** * consensus_2461#0 AAGCTCTATTCCCCATNATAANATGAGGGGTNAATTCATAAAGCATTGGACACTGGCCGT 895 consensus_2461#1 ATTTTTTGTTCGTCATACAA---------------------------------------- 702 * * * *** *** * consensus_2461#0 ACGATATNCAACAACNGTCAGATGACTGNG 925 consensus_2461#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||