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Anopheles gambiae
cluster # 2461 cluster # 2461       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2461#0 length = 925 sequences # 1  
consensus_2461#1 length = 702 sequences # 1  

consensusID : consensus_2461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 925
fasta sequence
                              [GCAGATCCCCCGAGGTTAAATATGTACATCCAGCAGCAGGCCAACGCAACGGCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCTGACGTTAGCATCCAGAAACCTGAGCTGCCAAAGGTGACGGTGGCAATGGCTGCCACCAGCCGGTGGTGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTTGCACTTAACTTCATTCATACGTTCCATACTTGTGTGTCCCCCCATATATATTTGTTCGTCCATACAATCATTTCCATTTCATTTAAATGCGTCGACGGTTNTAGTTAACTTCATGACAGCAGGGTTTAGAGTTTGTCAACCTGCTGCAGCAGACTGCGTTCATCACAGTTGTCAGTGGACAGCAAGAAGCAGTGGCACACCGAGAAGTGCAATGCGTTTCAGAGGTTCAAGTTAGTNTGTGAGCGAATTTTACACGCAATTTCNCATAATGAAGCGAACGTNCTGTGCAGAACATGACATACATACACACCATATCGTTCTAAGATTTCCTAAGCTCTGACTTTTACGAGTGAAACCCCCGCAAATGGATCGGGAGATTGCTANGTCTGGGATAAATTATANAACATAGTACTANNNGTATACAGGGTACGAATTGACACANTATCAGGAAACGTATGAGAGACAGCCGCGAAAAAAACAAAACAACCAAACCAGGCNNTGTATGCGGACCGNACAAGCTCTATTCCCCATNATAANATGAGGGGTNAATTCATAAAGCATTGGACACTGGCCGTACGATATNCAACAACNGTCAGATGACTGNG]

[+] EMBL AL930358             [GCAGATCCCCCGAGGTTAAATATGTACATCCAGCAGCAGGCCAACGCAACGGCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCTGACGTTAGCATCCAGAAACCTGAGCTGCCAAAGGTGACGGTGGCAATGGCTGCCACCAGCCGGTGGTGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTTGCACTTAACTTCATTCATACGTTCCATACTTGTGTGTCCCCCCATATATATTTGTTCGTCCATACAATCATTTCCATTTCATTTAAATGCGTCGACGGTTNTAGTTAACTTCATGACAGCAGGGTTTAGAGTTTGTCAACCTGCTGCAGCAGACTGCGTTCATCACAGTTGTCAGTGGACAGCAAGAAGCAGTGGCACACCGAGAAGTGCAATGCGTTTCAGAGGTTCAAGTTAGTNTGTGAGCGAATTTTACACGCAATTTCNCATAATGAAGCGAACGTNCTGTGCAGAACATGACATACATACACACCATATCGTTCTAAGATTTCCTAAGCTCTGACTTTTACGAGTGAAACCCCCGCAAATGGATCGGGAGATTGCTANGTCTGGGATAAATTATANAACATAGTACTANNNGTATACAGGGTACGAATTGACACANTATCAGGAAACGTATGAGAGACAGCCGCGAAAAAAACAAAACAACCAAACCAGGCNNTGTATGCGGACCGNACAAGCTCTATTCCCCATNATAANATGAGGGGTNAATTCATAAAGCATTGGACACTGGCCGTACGATATNCAACAACNGTCAGATGACTGNG]


>consensus_2461#0 GCAGATCCCCCGAGGTTAAATATGTACATCCAGCAGCAGGCCAACGCAACGGCGGAAGCG AAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACA ACCGTCCCGTGATCTGACGTTAGCATCCAGAAACCTGAGCTGCCAAAGGTGACGGTGGCA ATGGCTGCCACCAGCCGGTGGTGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGG GGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAG GAACAATAAGGCACGTTTTTGCACTTAACTTCATTCATACGTTCCATACTTGTGTGTCCC CCCATATATATTTGTTCGTCCATACAATCATTTCCATTTCATTTAAATGCGTCGACGGTT NTAGTTAACTTCATGACAGCAGGGTTTAGAGTTTGTCAACCTGCTGCAGCAGACTGCGTT CATCACAGTTGTCAGTGGACAGCAAGAAGCAGTGGCACACCGAGAAGTGCAATGCGTTTC AGAGGTTCAAGTTAGTNTGTGAGCGAATTTTACACGCAATTTCNCATAATGAAGCGAACG TNCTGTGCAGAACATGACATACATACACACCATATCGTTCTAAGATTTCCTAAGCTCTGA CTTTTACGAGTGAAACCCCCGCAAATGGATCGGGAGATTGCTANGTCTGGGATAAATTAT ANAACATAGTACTANNNGTATACAGGGTACGAATTGACACANTATCAGGAAACGTATGAG AGACAGCCGCGAAAAAAACAAAACAACCAAACCAGGCNNTGTATGCGGACCGNACAAGCT CTATTCCCCATNATAANATGAGGGGTNAATTCATAAAGCATTGGACACTGGCCGTACGAT ATNCAACAACNGTCAGATGACTGNG



consensusID : consensus_2461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence
                              [CCGCTCTACCAGTGCAGCGAAAATCGGTGAAACTAGCGACACCGAAAGTGCCGAAGTGAAGCAACCGATGACGAAAACCCAGCGCCTGAAGAACATTTTCGCCAAACGCTTGCAGCGTGGAGGTGGTGCCGGAACGAACGAACTGCCTGAAGAGATCGTCACCACCCCGGACGTAGCGGCCGTCGACGAGCAGGACACGAAGCCGTCCGATGGAGCGGGTAAACCGGCAAAGGACGATCAAACGCTGGTGTACGCCGAGCTGGAGCTAAAACCGGCCGCCGGGGAGATCTCGTTCGTCAACAAACCGCCAGCCGCCGTCAGCAACGAGTCGACCGAGTATGCCGAAATTATGTACATCCAGCAGCAGGCCAACGCAACGGCCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCGACGTTAGCATCCAGAAACCGAGCGCCAAAGGTGACGGTGGCAAGGCGCCACCAGCCGGGGGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTGCACTTAACTTCATTCATCGTTCCATACTGTGTGTCCCCCCATTTTTTGTTCGTCATACAA]

[+] EMBL BM620343             [CCGCTCTACCAGTGCAGCGAAAATCGGTGAAACTAGCGACACCGAAAGTGCCGAAGTGAAGCAACCGATGACGAAAACCCAGCGCCTGAAGAACATTTTCGCCAAACGCTTGCAGCGTGGAGGTGGTGCCGGAACGAACGAACTGCCTGAAGAGATCGTCACCACCCCGGACGTAGCGGCCGTCGACGAGCAGGACACGAAGCCGTCCGATGGAGCGGGTAAACCGGCAAAGGACGATCAAACGCTGGTGTACGCCGAGCTGGAGCTAAAACCGGCCGCCGGGGAGATCTCGTTCGTCAACAAACCGCCAGCCGCCGTCAGCAACGAGTCGACCGAGTATGCCGAAATTATGTACATCCAGCAGCAGGCCAACGCAACGGCCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCGACGTTAGCATCCAGAAACCGAGCGCCAAAGGTGACGGTGGCAAGGCGCCACCAGCCGGGGGCAAATAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTGCACTTAACTTCATTCATCGTTCCATACTGTGTGTCCCCCCATTTTTTGTTCGTCATACAA]


>consensus_2461#1 CCGCTCTACCAGTGCAGCGAAAATCGGTGAAACTAGCGACACCGAAAGTGCCGAAGTGAA GCAACCGATGACGAAAACCCAGCGCCTGAAGAACATTTTCGCCAAACGCTTGCAGCGTGG AGGTGGTGCCGGAACGAACGAACTGCCTGAAGAGATCGTCACCACCCCGGACGTAGCGGC CGTCGACGAGCAGGACACGAAGCCGTCCGATGGAGCGGGTAAACCGGCAAAGGACGATCA AACGCTGGTGTACGCCGAGCTGGAGCTAAAACCGGCCGCCGGGGAGATCTCGTTCGTCAA CAAACCGCCAGCCGCCGTCAGCAACGAGTCGACCGAGTATGCCGAAATTATGTACATCCA GCAGCAGGCCAACGCAACGGCCGGAAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCAACC GCAGCAGCGTCACCATTCGAGCGAAGACAACCGTCCCGTGATCGACGTTAGCATCCAGAA ACCGAGCGCCAAAGGTGACGGTGGCAAGGCGCCACCAGCCGGGGGCAAATAATCTGCTCG AAACCTCGCCGAATAAAGGGGGGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTC CTCCTCCGTGTCGAATGAGGAGGAACAATAAGGCACGTTTTGCACTTAACTTCATTCATC GTTCCATACTGTGTGTCCCCCCATTTTTTGTTCGTCATACAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2461#0      GCAGATCCCCCGAGGTTAAATATGTACATCCAGCAGCAGGCCAACGCAACGGCGGAAGCG 60
consensus_2461#1      ------------------------------------------------------CCGCTC 6
                                                                                  

consensus_2461#0      AAGCAACGCAGCAGCAGCCTCAGCAGCAACCGCAGCAGCGTCACCATTCGAGCGAAGACA 120
consensus_2461#1      TACCAGTGCAGCGAAAA--TCGGTGAAACTAGCGACACCGAAAGTGCCGAAGTGAAG-CA 63
                       * **  *****   *   ** *    *   **  ** **  *       ** **** **

consensus_2461#0      ACCGTCCCGTGATCTGACGTTAGCATCCAGAAACCTGAGCTGCCAAAGGTGACGGTGGCA 180
consensus_2461#1      ACCG----ATGACGAAAACCCAGCGCCTGAAGAACATTTTCGCCAAA-----CGCTTGCA 114
                      ****     ***    *    ***  *   * * *      ******     ** * ***

consensus_2461#0      ATGGCTGCCACCAGCCGGTGGTGCAAATAATCTGCTCGAA-ACCTCGCCGAATAAAGGGG 239
consensus_2461#1      GCG--TGGAGGTGGT-GCCGGAACGAACGAACTGCCTGAAGAGATCGTCACCACCCCGGA 171
                        *  **      *  *  **  * **  * ****  *** *  *** *        ** 

consensus_2461#0      GGGAAAAGCAGCCTACAAGAGGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGA 299
consensus_2461#1      CGTAGCGGCCGTCGACGAGCAGGACACGAAGCCGTCC-----------GATGGAGCGGGT 220
                       * *   ** * * ** **  * * *  **** ** *           *  * *   ** 

consensus_2461#0      GGAACAATAAGGCACGTTTTTGCACTTAACTTCATTCATACGTTCCATACTTGTGTGTCC 359
consensus_2461#1      AAACCGGCAAAGGACGATCAAACGCTGG--------TGTACG--CCGAGCTGGAGC---- 266
                        * *   ** * *** *    * **            ****  **   ** * *     

consensus_2461#0      CCCCATATATATTTGTTCGTCCATACAATCATTTCCATTTCATTTAAATGCGTCGACGGT 419
consensus_2461#1      -------TAAAACCGGCCGCCGGGGAGATCTCGTTCGTC-------AACAAACCGCCAGC 312
                             ** *   *  ** *      ***   * * *        **     ** * * 

consensus_2461#0      TNTAGTTAACTTCATGACAGCAGGGTTTA--GAGTTTGTCAACCTGCTGCAGCAGACTGC 477
consensus_2461#1      CGCCGTCAGCAACGAGTCGACCGAGTATGCCGAAATTATGTACATCCAGCAGCAGGC--- 369
                          ** * *  *  * *  * * ** *   **  ** *  ** * * ******* *   

consensus_2461#0      GTTCATCACAGTTGTCAGTGGACAGCAAGAAGCAGTGGCACACCGAGAAGTGCAATGCGT 537
consensus_2461#1      ---CAACGCAACGGCCGG-AAGCGAAGCAACGCAGCAGCAGCCTCAGCAGCA------AC 419
                         ** * **   * * *    *      * ****  ***  *  ** **          

consensus_2461#0      TTCAGAGGTTCAAGTTAGTNTGTGAGCGAATTTTACACGCAATTTCNCATAAT-GAAGCG 596
consensus_2461#1      CGCAGCAGC----GTCACCATTCGAGCGAAGACAAC------CGTCCCGTGATCGACGTT 469
                        ***  *     ** *   *  *******    **        ** * * ** ** *  

consensus_2461#0      AACGTNCTGTG-CAGAACATGACATACATACACACCATATCGTTCTAAGATTTCCTAAGC 655
consensus_2461#1      AGCATCCAGAAACCGAGCGCCAAAGGTGACGGTGGCAAGGCGCCACCAG-----CCGGGG 524
                      * * * * *   * ** *   * *           **   **     **     *   * 

consensus_2461#0      TCTGACTTTTACGAGTGAAACCCCCGCAAATGGATCGGGAGATTGCTANGTCTGGGATAA 715
consensus_2461#1      GCAAA-TAATCTGCTCGAAACCTCGCCGAATAAAGGGGGGGAAAAGCAG--CCTACAAGA 581
                       *  * *  *  *   ****** *  * ***  *  *** **     *   *    *  *

consensus_2461#0      ATTATANAACATAGTACTANNNGTATACAGGGTACGAATTGACACANTATCAGGAAACGT 775
consensus_2461#1      GGCATAGCAAGCAGTACTCCTCCTCCGTGTCGAATGAGGAGGAACAATA---AGGCACGT 638
                         ***  *   ******     *       * * **   *  *** **    *  ****

consensus_2461#0      ATGAGAGACAGCCGCGAAAAAAACAAAACAACCAAACCAGGCNNTGTATGCGGACCGNAC 835
consensus_2461#1      TTTGCACTTAACTTC-----------ATTCATCGTTCCATACTGTGTGT-----CCCCCC 682
                       *   *   * *  *           *   * *   ***  *  *** *     **   *

consensus_2461#0      AAGCTCTATTCCCCATNATAANATGAGGGGTNAATTCATAAAGCATTGGACACTGGCCGT 895
consensus_2461#1      ATTTTTTGTTCGTCATACAA---------------------------------------- 702
                      *   * * ***  ***   *                                        

consensus_2461#0      ACGATATNCAACAACNGTCAGATGACTGNG 925
consensus_2461#1      ------------------------------
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)