These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGCAGGGACAGTCGTGTGTTAACACAACACTCTCTCTCACACACTCAGGTCCACTCGTAGCAGACGTAGAACAGGAACCATGATGGCAAGATTTGGCTGGGAAAGAGAGTATAAAAAAACAGCATTGACCAGTTAGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTTGTATGTACCGACCAAGCAAGTAAAAAGTAGAAGAATGAGAGGAGCAAGAAATATGCGTTGCAAAAGGGGCACAAAAACGGTAGGACAACAGATAACCGCATGGATACGATTAGCATATAGGTGTCCTTCAACTCTTTCTATCCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCATTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAAGTAGAGTAGAATGATTGCAGATCGCAGGGTTGTCTTTATTTTTAGTTGATTGTAGAGCACGTGTAGAGATGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCTGCTCTCGAACGGCGGATGTATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTTTCCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTTTCGGCCCAGTCAACGAACGTCGTGTCCCGGTAGATTAGAGGAGT] [+] EMBL BM591706 [CCGCAGGGACAGTCGTGTGTTAACACAACACTCTCTCTCACACACTCAGGTCCACTCGTAGCAGACGTAGAACAGGAACCATGATGGCAAGATTTGGCTGGGAAAGAGAGTATAAAAAAACAGCATTGACCAGTTAGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTTGTATGTACCGACCAAGCAAGTAAAAAGTAGAAGAATGAGAGGAGCAAGAAATATGCGTTGCAAAAGGGGCACAAAAACGGTAGGACAACAGATAACCGCATGGATACGATTAGCATATAGGTGTCCTTCAACTCTTTCTATCCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCATTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAAGTAGAGTAGAATGATTGCAGATCGCAGGGTTGTCTTTATTTTTAGTTGATTGTAGAGCACGTGTAGAGATGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCTGCTCTCGAACGGCGGATGTATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTTTCCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTTTCGGCCCAGTCAACGAACGTCGTGTCCCGGTAGATTAGAGGAGT] consensusID : consensus_2468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [AGAATCGCCCGAGGTAAAGAGAGTGTAAAAACAGCAGTGACCAGTTTGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTGTATGTACCGACCAAGCAAGTAAAAAGTAAAAGGAGAGTAGAGGAGCAAGAAATATGCGTGCAATAGGGGCACAAAAACGGTAGGACAACGGACAACCGCATGGATACGATTAGCATATAGGTGTCCTTCAACTCTTTCTACCCTCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCATTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAACTAGAGTAGAATGATTGCAGATCGCAGGGTTGTCTTTATGTTTAGTTGATTGTAGAGCACGTGTAGAGATGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCTGCTCTCGAACGGCGGATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTTTTCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTATTCGGCCCAGTCAACGAACGTCGTTNTC] [+] EMBL AL930419 [AGAATCGCCCGAGGTAAAGAGAGTGTAAAAACAGCAGTGACCAGTTTGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTGTATGTACCGACCAAGCAAGTAAAAAGTAAAAGGAGAGTAGAGGAGCAAGAAATATGCGTGCAATAGGGGCACAAAAACGGTAGGACAACGGACAACCGCATGGATACGATTAGCATATAGGTGTCCTTCAACTCTTTCTACCCTCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCATTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAACTAGAGTAGAATGATTGCAGATCGCAGGGTTGTCTTTATGTTTAGTTGATTGTAGAGCACGTGTAGAGATGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCTGCTCTCGAACGGCGGATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTTTTCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTATTCGGCCCAGTCAACGAACGTCGTTNTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2468#0 CCGCAGGGACAGTCGTGTGTTAACACAACACTCTCTCTCACACACTCAGGTCCACTCGTA 60 consensus_2468#1 ------------------------------------------------------------ consensus_2468#0 GCAGACGTAGAACAGGAACCATGATGGCAAGATTTGGCTGGGAAAGAGAGTATAAAAAAA 120 consensus_2468#1 -----------------------------AGAATCGCCCGAGGTAAAGAGAGTGTAAAAA 31 *** * * * * * * **** * ***** consensus_2468#0 CAGCATTGACCAGTTAGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTTTGTATG 180 consensus_2468#1 CAGCAGTGACCAGTTTGCAGAGAAATTAGCGGAGATTTTCGGTTTTATAGCTTT-GTATG 90 ***** ********* ************************************** ***** consensus_2468#0 TACCGACCAAGCAAGTAAAAAGTAGAAGAATG--AGAGGAGCAAGAAATATGCGTTGCAA 238 consensus_2468#1 TACCGACCAAGCAAGTAAAAAGTAAAAGGAGAGTAGAGGAGCAAGAAATATGCGT-GCAA 149 ************************ *** * ********************* **** consensus_2468#0 AAGGGGCACAAAAACGGTAGGACAACAGATAACCGCATGGATACGATTAGCATATAGGTG 298 consensus_2468#1 TAGGGGCACAAAAACGGTAGGACAACGGACAACCGCATGGATACGATTAGCATATAGGTG 209 ************************* ** ****************************** consensus_2468#0 TCCTTCAACTCTTTCTATCCTCTCT--TTCTCTCTCTACCGTGGCCAAACGATCCCACCA 356 consensus_2468#1 TCCTTCAACTCTTTCTACCCTCTCTCTTTCTCTCTCTACCGTGGCCAAACGATCCCACCA 269 ***************** ******* ********************************* consensus_2468#0 TTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAAGTAGAGTAG 416 consensus_2468#1 TTCGCAGGCACAATCGTATCGCACCGGCCACCCTGCGTTCCACATGATCAACTAGAGTAG 329 *************************************************** ******** consensus_2468#0 AATGATTGCAGATCGCAGGGTTGTCTTTATTTTTAGTTGATTGTAGAGCACGTGTAGAGA 476 consensus_2468#1 AATGATTGCAGATCGCAGGGTTGTCTTTATGTTTAGTTGATTGTAGAGCACGTGTAGAGA 389 ****************************** ***************************** consensus_2468#0 TGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCT 536 consensus_2468#1 TGGATGGCGATTTCCCCCCAATTTGAATACGTTTCCCCATTATTATCGCATTGATCTCCT 449 ************************************************************ consensus_2468#0 GCTCTCGAACGGCGGATGTATGTATGTGAATGCATCGGTTCGGGATGATCTTGAATGTTT 596 consensus_2468#1 GCTCTCGAACGGCGGATGTATG----TGAATGCATCGGTTCGGGATGATCTTGAATGTTT 505 ********************** ********************************** consensus_2468#0 TCCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTT-TTCGGCCCAGTCAA 655 consensus_2468#1 TTCCCCTGAAATGCCCCTCACTTCTTTCCCCGCTCTGTTTCTGTTATTCGGCCCAGTCAA 565 * ******************************************* ************** consensus_2468#0 CGAACGTCGTGTCCCGGTAGATTAGAGGAGT 686 consensus_2468#1 CGAACGTCGTTNTC----------------- 579 ********** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||