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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence
[AACAATGGCGGCGGAAACGGGGGTGGCGGCGGCAGCGGCGGAAACGCGCACGACCATCTGGCCGATGGGCTGCACAGCATACCGTCACCGCCGATTACCGTGTCCGGGAGCGACATGTCCAGCCCGGGAGCGCCGACGGGATCATCGTCGCCCCAGATTACGCCCCGCCCGACGCCGGTCAAGAGCCCGTACGAGTGGATGAAGAAGCAGTCCTACCAGAGTCAACCCAATCCAGGGAAGACACGCACGAAAGACAAGTACCGGGTGGTGTACACCGACCAGCAGCGGCTCGAGCTGGAGAAGGAGTTCCACTACACGCGCTACATCACGATCCGCCGGAAGGCCGAGCTGGCCCAGAACCTGCAGCTGTCCGAGCGGCAGGTGAAGATCTGGTTCCAGAACCGTCGCGCCAAGGACCGCAAGCAGAAGAAGAAGGCCGAAACGGGCAGCGTGGGCGGTGGCATGGGTGGACTCGGCGGTGGCCAGTCGCTGGTGGCAGCGCACGCCCAGGGCCACAACCCGCATGGTGGGGCGGCCCAGTCGATGTCGGCCCTGCTGGCGGACACGAAGCCGAAGCTCGAACCGTCGCTACACCTCTCGCACCTGCACCAGATGAGCGCGATGAGCATGGGCATGGGCTCGATGGGGCTGCACCATCACCATCCCGGCCACCATGCGGCACTGCACGCGCACCTTGGCGTGCCGACCTCGCAGCACCATCAGCTGAACCAGGCGGCAGTGGCAGCGGCCGCCGCCTCACAGGTGCCTTCGACCTCGCTCAGCATAATGTGATGTGGTGGTGTGG]
[+] EMBL AF119382 [AACAATGGCGGCGGAAACGGGGGTGGCGGCGGCAGCGGCGGAAACGCGCACGACCATCTGGCCGATGGGCTGCACAGCATACCGTCACCGCCGATTACCGTGTCCGGGAGCGACATGTCCAGCCCGGGAGCGCCGACGGGATCATCGTCGCCCCAGATTACGCCCCGCCCGACGCCGGTCAAGAGCCCGTACGAGTGGATGAAGAAGCAGTCCTACCAGAGTCAACCCAATCCAGGGAAGACACGCACGAAAGACAAGTACCGGGTGGTGTACACCGACCAGCAGCGGCTCGAGCTGGAGAAGGAGTTCCACTACACGCGCTACATCACGATCCGCCGGAAGGCCGAGCTGGCCCAGAACCTGCAGCTGTCCGAGCGGCAGGTGAAGATCTGGTTCCAGAACCGTCGCGCCAAGGACCGCAAGCAGAAGAAGAAGGCCGAAACGGGCAGCGTGGGCGGTGGCATGGGTGGACTCGGCGGTGGCCAGTCGCTGGTGGCAGCGCACGCCCAGGGCCACAACCCGCATGGTGGGGCGGCCCAGTCGATGTCGGCCCTGCTGGCGGACACGAAGCCGAAGCTCGAACCGTCGCTACACCTCTCGCACCTGCACCAGATGAGCGCGATGAGCATGGGCATGGGCTCGATGGGGCTGCACCATCACCATCCCGGCCACCATGCGGCACTGCACGCGCACCTTGGCGTGCCGACCTCGCAGCACCATCAGCTGAACCAGGCGGCAGTGGCAGCGGCCGCCGCCTCACAGGTGCCTTCGACCTCGCTCAGCATAATGTGATGTGGTGGTGTGG]
consensusID : consensus_2481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence
[CAGAATTGCCCGAGGTTAATCCAGTGAAGACACGCACGAAAGACAAGTACGGGTTGTGTACACCGACCAGCAGCTGGCTCGAGCTGGAGAAGTGAGTTCCACTACACGCGCTACATCTACGATCCTGCCGGAAGTGCCGAGCTGGCCCAGAACCTGCAGCTGTCCTGAGCTGGCAGGTGAATGATCTTGGTTCCAGAACCTGTCTGCTGCCAATGGACCGCAATGCAGAAGAAGAAGGCCGAAACTGGGCAGCTGTGGTGCTGGTGTGCATGGNGTTGNGACTCTGTGCTGGTGGCCAGTACGCTGGTTGTGCAGCGCACTGCCCAGNGTACCACAANCCCGCATGGCTGGGNGCTGGACACAGTCGATTGTCGGCCTGCTGGCTGGACACGAAAGCCGAAAGCTACGAACCGTCGCTANCACCTCTACGGCACCTTGGCACCTAGATTGAGCCGCCGNATGAGCCATTGGGCCATTGGGGCTCGAATAGGGTCGCCTTGGCACCCAATCACCATATCCGGGCCACCATGCGGGCACTTTTGGCTNAANCGNCCCGCCAAACCCTTATTAGGAGGCTGGTTAGCACCCGGAACACCCTTACCGGACCCAAGNCAAACCCCAATACCAAAGNNCCGTTNTAGGCAGAACCCCAAGANNGCCCTGCAGNCCNAGACTCAGGGGACCACGANCNCGGCGGACACNGGTNCCNGCGGCACCTTACNACACAAAGGCGATTAGGCCCTTATNCGAA]
[+] EMBL AL930557 [CAGAATTGCCCGAGGTTAATCCAGTGAAGACACGCACGAAAGACAAGTACGGGTTGTGTACACCGACCAGCAGCTGGCTCGAGCTGGAGAAGTGAGTTCCACTACACGCGCTACATCTACGATCCTGCCGGAAGTGCCGAGCTGGCCCAGAACCTGCAGCTGTCCTGAGCTGGCAGGTGAATGATCTTGGTTCCAGAACCTGTCTGCTGCCAATGGACCGCAATGCAGAAGAAGAAGGCCGAAACTGGGCAGCTGTGGTGCTGGTGTGCATGGNGTTGNGACTCTGTGCTGGTGGCCAGTACGCTGGTTGTGCAGCGCACTGCCCAGNGTACCACAANCCCGCATGGCTGGGNGCTGGACACAGTCGATTGTCGGCCTGCTGGCTGGACACGAAAGCCGAAAGCTACGAACCGTCGCTANCACCTCTACGGCACCTTGGCACCTAGATTGAGCCGCCGNATGAGCCATTGGGCCATTGGGGCTCGAATAGGGTCGCCTTGGCACCCAATCACCATATCCGGGCCACCATGCGGGCACTTTTGGCTNAANCGNCCCGCCAAACCCTTATTAGGAGGCTGGTTAGCACCCGGAACACCCTTACCGGACCCAAGNCAAACCCCAATACCAAAGNNCCGTTNTAGGCAGAACCCCAAGANNGCCCTGCAGNCCNAGACTCAGGGGACCACGANCNCGGCGGACACNGGTNCCNGCGGCACCTTACNACACAAAGGCGATTAGGCCCTTATNCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2481#0 AACAATGGCGGCGGAAACGGGGGTGGCGGCGGCAGCGGCGGAAACGCGCACGACCATCTG 60
consensus_2481#1 ------------------------------------------------------------
consensus_2481#0 GCCGATGGGCTGCACAGCATACCGTCACCGCCGATTACCGTGTCCGGGAGCGACATGTCC 120
consensus_2481#1 ------------------------------------------------------------
consensus_2481#0 AGCCCGGGAGCGCCGACGGGATCATCGTCGCCCCAGATTACGCCCCGCCCGACGCCGGTC 180
consensus_2481#1 ------------------------------------------------------------
consensus_2481#0 AAGAGCCCGTACGAGTGGATGAAGAAGCAGTCCTACCAGAGTCAACCCAATCCAGGGAAG 240
consensus_2481#1 ---------------------------CAGAATTGCCCGAGG----TTAATCCAGTGAAG 29
*** * ** *** ******* ****
consensus_2481#0 ACACGCACGAAAGACAAGTACCGGGTGGTGTACACCGACCAGCAGC-GGCTCGAGCTGGA 299
consensus_2481#1 ACACGCACGAAAGACAAGTAC-GGGTTGTGTACACCGACCAGCAGCTGGCTCGAGCTGGA 88
********************* **** ******************* *************
consensus_2481#0 GAAG-GAGTTCCACTACACGCGCTACATC-ACGATCC-GCCGGAAG-GCCGAGCTGGCCC 355
consensus_2481#1 GAAGTGAGTTCCACTACACGCGCTACATCTACGATCCTGCCGGAAGTGCCGAGCTGGCCC 148
**** ************************ ******* ******** *************
consensus_2481#0 AGAACCTGCAGCTGTCC-GAGC-GGCAGGTGAA-GATCT-GGTTCCAGAACC-GTCG--C 408
consensus_2481#1 AGAACCTGCAGCTGTCCTGAGCTGGCAGGTGAATGATCTTGGTTCCAGAACCTGTCTGCT 208
***************** **** ********** ***** ************ ***
consensus_2481#0 GCCAA-GGACCGCAA-GCAGAAGAAGAAGGCCGAAAC-GGGCAGCGTGGGCGGTGGCATG 465
consensus_2481#1 GCCAATGGACCGCAATGCAGAAGAAGAAGGCCGAAACTGGGCAGCTGTGGTGCTGGTGTG 268
***** ********* ********************* ******* ** * *** **
consensus_2481#0 GGTGGACTCGG----------CGGTGGCCAGT-CGCTGGTGG--CAGCGCAC-GCCCAGG 511
consensus_2481#1 CATGGNGTTGNGACTCTGTGCTGGTGGCCAGTACGCTGGTTGTGCAGCGCACTGCCCAGN 328
*** * * ********** ******* * ******** ******
consensus_2481#0 G--CCACAACCC-GCATGGTGGGGCG----GCCCAGTCGATGTCGGCCCTGCTGGC-GGA 563
consensus_2481#1 GTACCACAANCCCGCATGGCTGGGNGCTGGACACAGTCGATTGTCGGCCTGCTGGCTGGA 388
* ****** ** ****** *** * * ******** * ********* ***
consensus_2481#0 CACGAA-GCCGAA-GCT-CGAACCGTCGCTAC-ACCTCTC--GCACCT--GCACC-AGAT 614
consensus_2481#1 CACGAAAGCCGAAAGCTACGAACCGTCGCTANCACCTCTACGGCACCTTGGCACCTAGAT 448
****** ****** *** ************* ****** ****** ***** ****
consensus_2481#0 GAGCGCGATGAGCATGGGCATGGGCTCGATGGGGCTGCACCATCACCATCCCGGCCACCA 674
consensus_2481#1 TGAGCCGCCGNATG-AGCCATTGGGCCATTGGGGCTCGAATAGGGTCGCCTTGGCACCCA 507
** * * *** ** * ******* * * * * *** ***
consensus_2481#0 TGCGGCACTGCACGCGCACCTTGGCG----TGCCGACCTCGCAGCACCATCAG--CTGAA 728
consensus_2481#1 ATCACCATATCCGGGCCACCATGCGGGCACTTTTGGCTNAANCGNCCCGCCAAACCCTTA 567
* ** * * **** ** * * * * * ** ** * *
consensus_2481#0 CCAGGCGGCAG--TGGCAGCGGCCGCCGCCTCACAGGTGCCTTCGACCTCGCTCAGCAT- 785
consensus_2481#1 TTAGGAGGCTGGTTAGCACCCGGAACACCCTTACCGG-ACCCAAGNCAAACCCCAATACC 626
*** *** * * *** * * * *** ** ** ** * * * ** *
consensus_2481#0 AATGTGATGTGGTGGTGTGG---------------------------------------- 805
consensus_2481#1 AAAGNNCCGTTNTAGGCAGAACCCCAAGANNGCCCTGCAGNCCNAGACTCAGGGGACCAC 686
** * ** * * *
consensus_2481#0 ------------------------------------------------------------
consensus_2481#1 GANCNCGGCGGACACNGGTNCCNGCGGCACCTTACNACACAAAGGCGATTAGGCCCTTAT 746
consensus_2481#0 -----
consensus_2481#1 NCGAA 751
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||