cluster # 2483

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2483 cluster # 2483 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2483#0 length = 885 sequences # 1

consensus_2483#1 length = 655 sequences # 1

consensusID : consensus_2483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 885
fasta sequence

                              [CACGCTCAACCTGGACACGGTGCAGAAGCTGTACCGCAAGGGACTGATCTACCTGGACGTGCCGATCAGCAGCGATGATCGTATTAACATTCCGCCGTTGCGAAACTTCGTGATGAATCGGGTCGCGGGTGATTATTTTGAAAATTTGCTGTACAACGTGTTCGTAACGACGGACGAGCAGTGCACCATATCGGAGCTGTCACAGATTCTGCAAGTGCATATGGACACGGTGAAGCAGGCCACCTCGCTGTTCTGTCGGCTCGGGTTTGCCAAGATAAAGAATGCCTTTGCCGAGTTCAAGCTGGACGAAAGTACAAGTACCTGATCTCGGCGGCGCCCCTGTCCGGTTCGCTGTCGAGTCAGTTTACCATTCCATTTTTCGGTCAGTTTTACCAGAGCTCGGCCGATTCGCACATTTGGTCGAAGCTGTTCTACTACCATATGGGCGGTTACGGTCCACCGTCTTTGTTTCTGAAGAAGGGTACCGTGTTGAAATCCTTGCCACGAATGTTTCTCGGCTACGGCAAGCTTCTGATCACGATTGTCAACACCGACTCGTATGTGTTGAATTCGGAGAAGTTTTACACGCTGAACGAGCACCTCAAGAATGAGTGTCTGCTTATTCAGGGATATGGTATCAACGAACCGGCCAAGGTTCACTACGAGCCGTTTCCGTTCGACATAAACGACGAAGACAATCGTTGGGGACAGCATGCAGCTTGGAACGGACTGTCGCAGGTCGTGAATATGGAGAAAACGTTCGGTTATGTTACGTTCATCAACACAGGCGTTCCGGACCTGGGCTGCGACAATTATAATCCCTCCGTGGTACTTAAAAGACCGGGTGATAGGAAACAAAAGAATACAGCGAAAGAAGGAAGAGCC]

[+] EMBL BX606295             [CACGCTCAACCTGGACACGGTGCAGAAGCTGTACCGCAAGGGACTGATCTACCTGGACGTGCCGATCAGCAGCGATGATCGTATTAACATTCCGCCGTTGCGAAACTTCGTGATGAATCGGGTCGCGGGTGATTATTTTGAAAATTTGCTGTACAACGTGTTCGTAACGACGGACGAGCAGTGCACCATATCGGAGCTGTCACAGATTCTGCAAGTGCATATGGACACGGTGAAGCAGGCCACCTCGCTGTTCTGTCGGCTCGGGTTTGCCAAGATAAAGAATGCCTTTGCCGAGTTCAAGCTGGACGAAAGTACAAGTACCTGATCTCGGCGGCGCCCCTGTCCGGTTCGCTGTCGAGTCAGTTTACCATTCCATTTTTCGGTCAGTTTTACCAGAGCTCGGCCGATTCGCACATTTGGTCGAAGCTGTTCTACTACCATATGGGCGGTTACGGTCCACCGTCTTTGTTTCTGAAGAAGGGTACCGTGTTGAAATCCTTGCCACGAATGTTTCTCGGCTACGGCAAGCTTCTGATCACGATTGTCAACACCGACTCGTATGTGTTGAATTCGGAGAAGTTTTACACGCTGAACGAGCACCTCAAGAATGAGTGTCTGCTTATTCAGGGATATGGTATCAACGAACCGGCCAAGGTTCACTACGAGCCGTTTCCGTTCGACATAAACGACGAAGACAATCGTTGGGGACAGCATGCAGCTTGGAACGGACTGTCGCAGGTCGTGAATATGGAGAAAACGTTCGGTTATGTTACGTTCATCAACACAGGCGTTCCGGACCTGGGCTGCGACAATTATAATCCCTCCGTGGTACTTAAAAGACCGGGTGATAGGAAACAAAAGAATACAGCGAAAGAAGGAAGAGCC]




>consensus_2483#0
CACGCTCAACCTGGACACGGTGCAGAAGCTGTACCGCAAGGGACTGATCTACCTGGACGT
GCCGATCAGCAGCGATGATCGTATTAACATTCCGCCGTTGCGAAACTTCGTGATGAATCG
GGTCGCGGGTGATTATTTTGAAAATTTGCTGTACAACGTGTTCGTAACGACGGACGAGCA
GTGCACCATATCGGAGCTGTCACAGATTCTGCAAGTGCATATGGACACGGTGAAGCAGGC
CACCTCGCTGTTCTGTCGGCTCGGGTTTGCCAAGATAAAGAATGCCTTTGCCGAGTTCAA
GCTGGACGAAAGTACAAGTACCTGATCTCGGCGGCGCCCCTGTCCGGTTCGCTGTCGAGT
CAGTTTACCATTCCATTTTTCGGTCAGTTTTACCAGAGCTCGGCCGATTCGCACATTTGG
TCGAAGCTGTTCTACTACCATATGGGCGGTTACGGTCCACCGTCTTTGTTTCTGAAGAAG
GGTACCGTGTTGAAATCCTTGCCACGAATGTTTCTCGGCTACGGCAAGCTTCTGATCACG
ATTGTCAACACCGACTCGTATGTGTTGAATTCGGAGAAGTTTTACACGCTGAACGAGCAC
CTCAAGAATGAGTGTCTGCTTATTCAGGGATATGGTATCAACGAACCGGCCAAGGTTCAC
TACGAGCCGTTTCCGTTCGACATAAACGACGAAGACAATCGTTGGGGACAGCATGCAGCT
TGGAACGGACTGTCGCAGGTCGTGAATATGGAGAAAACGTTCGGTTATGTTACGTTCATC
AACACAGGCGTTCCGGACCTGGGCTGCGACAATTATAATCCCTCCGTGGTACTTAAAAGA
CCGGGTGATAGGAAACAAAAGAATACAGCGAAAGAAGGAAGAGCC

consensusID : consensus_2483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGGATTGGCCACATACTGGAGAAGGACGTGGAGCACCTCAGCCTGGAGGAGATCAACACGATCGATCAGCTGATCGACTGTGGGCCCCAGACGGCCGGCACGCTCAACCTGGACACGGTGCAGAAGCTGTACCGCAAGGGACTGATCTACCTGGACGTGCCGATCAGCAGCGATGATCGTATTAACATTCCGCCGTTGCGAAACTTCGTGATGAATCGGGTCGCGGGTGATTATTTTGAAAATTTGCTGTACAACGTGTTCGTAACGACGGACGAGCAGTGCACCATATCGGAGCTGTCACAGATTCTGCAAGTGCATATGGACACGGTGAAGCAGGCCACCTCGCTGTTCTGTCGGCTCGGGTTTGCCAAGATAAAGAATGCCTTTGCCGAGTTCAAGCTGGACGAAAGCTGGCTCCAGCAGCAGGCGGACGGTGGGGAAGACGCCGCCGCCTACAACTACCACGCGCTGCTACTCTCGGAAGTGCCGCTGGAAGTGAAACCATCGCCGGACGGCAGCACACCGACCGTGCCCTTCTTCCCTCCGTCCGATCCGTCCAGCCCCGCTTCACCCGTGCCGCTCACACCGACCGATTCCGGGGCACCGTTTGCGAAGGAAAAAACGACCCCCGAATCAACGGGCAGCGGCTTCCGT]

[+] EMBL BM595634             [CCGGATTGGCCACATACTGGAGAAGGACGTGGAGCACCTCAGCCTGGAGGAGATCAACACGATCGATCAGCTGATCGACTGTGGGCCCCAGACGGCCGGCACGCTCAACCTGGACACGGTGCAGAAGCTGTACCGCAAGGGACTGATCTACCTGGACGTGCCGATCAGCAGCGATGATCGTATTAACATTCCGCCGTTGCGAAACTTCGTGATGAATCGGGTCGCGGGTGATTATTTTGAAAATTTGCTGTACAACGTGTTCGTAACGACGGACGAGCAGTGCACCATATCGGAGCTGTCACAGATTCTGCAAGTGCATATGGACACGGTGAAGCAGGCCACCTCGCTGTTCTGTCGGCTCGGGTTTGCCAAGATAAAGAATGCCTTTGCCGAGTTCAAGCTGGACGAAAGCTGGCTCCAGCAGCAGGCGGACGGTGGGGAAGACGCCGCCGCCTACAACTACCACGCGCTGCTACTCTCGGAAGTGCCGCTGGAAGTGAAACCATCGCCGGACGGCAGCACACCGACCGTGCCCTTCTTCCCTCCGTCCGATCCGTCCAGCCCCGCTTCACCCGTGCCGCTCACACCGACCGATTCCGGGGCACCGTTTGCGAAGGAAAAAACGACCCCCGAATCAACGGGCAGCGGCTTCCGT]




>consensus_2483#1
CCGGATTGGCCACATACTGGAGAAGGACGTGGAGCACCTCAGCCTGGAGGAGATCAACAC
GATCGATCAGCTGATCGACTGTGGGCCCCAGACGGCCGGCACGCTCAACCTGGACACGGT
GCAGAAGCTGTACCGCAAGGGACTGATCTACCTGGACGTGCCGATCAGCAGCGATGATCG
TATTAACATTCCGCCGTTGCGAAACTTCGTGATGAATCGGGTCGCGGGTGATTATTTTGA
AAATTTGCTGTACAACGTGTTCGTAACGACGGACGAGCAGTGCACCATATCGGAGCTGTC
ACAGATTCTGCAAGTGCATATGGACACGGTGAAGCAGGCCACCTCGCTGTTCTGTCGGCT
CGGGTTTGCCAAGATAAAGAATGCCTTTGCCGAGTTCAAGCTGGACGAAAGCTGGCTCCA
GCAGCAGGCGGACGGTGGGGAAGACGCCGCCGCCTACAACTACCACGCGCTGCTACTCTC
GGAAGTGCCGCTGGAAGTGAAACCATCGCCGGACGGCAGCACACCGACCGTGCCCTTCTT
CCCTCCGTCCGATCCGTCCAGCCCCGCTTCACCCGTGCCGCTCACACCGACCGATTCCGG
GGCACCGTTTGCGAAGGAAAAAACGACCCCCGAATCAACGGGCAGCGGCTTCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2483#0      ------------------------------------------------------------
consensus_2483#1      CCGGATTGGCCACATACTGGAGAAGGACGTGGAGCACCTCAGCCTGGAGGAGATCAACAC 60
                                                                                  

consensus_2483#0      ---------------------------------------CACGCTCAACCTGGACACGGT 21
consensus_2483#1      GATCGATCAGCTGATCGACTGTGGGCCCCAGACGGCCGGCACGCTCAACCTGGACACGGT 120
                                                             *********************

consensus_2483#0      GCAGAAGCTGTACCGCAAGGGACTGATCTACCTGGACGTGCCGATCAGCAGCGATGATCG 81
consensus_2483#1      GCAGAAGCTGTACCGCAAGGGACTGATCTACCTGGACGTGCCGATCAGCAGCGATGATCG 180
                      ************************************************************

consensus_2483#0      TATTAACATTCCGCCGTTGCGAAACTTCGTGATGAATCGGGTCGCGGGTGATTATTTTGA 141
consensus_2483#1      TATTAACATTCCGCCGTTGCGAAACTTCGTGATGAATCGGGTCGCGGGTGATTATTTTGA 240
                      ************************************************************

consensus_2483#0      AAATTTGCTGTACAACGTGTTCGTAACGACGGACGAGCAGTGCACCATATCGGAGCTGTC 201
consensus_2483#1      AAATTTGCTGTACAACGTGTTCGTAACGACGGACGAGCAGTGCACCATATCGGAGCTGTC 300
                      ************************************************************

consensus_2483#0      ACAGATTCTGCAAGTGCATATGGACACGGTGAAGCAGGCCACCTCGCTGTTCTGTCGGCT 261
consensus_2483#1      ACAGATTCTGCAAGTGCATATGGACACGGTGAAGCAGGCCACCTCGCTGTTCTGTCGGCT 360
                      ************************************************************

consensus_2483#0      CGGGTTTGCCAAGATAAAGAATGCCTTTGCCGAGTTCAAGCTGGACGAAAGTACAAGTAC 321
consensus_2483#1      CGGGTTTGCCAAGATAAAGAATGCCTTTGCCGAGTTCAAGCTGGACGAAAG--------- 411
                      ***************************************************         

consensus_2483#0      CTGATCTCGGCGGCGCCCCTGTCCGGTTCGCTGTCGAGTCAGTTTACCATTCCATTTTTC 381
consensus_2483#1      CTGGCTCCAGCAGCAGGCG-GACGGTGGGGAAGACGCCGCCGCCTACAACTACCACGCGC 470
                      ***    * ** **   *  * * *    *  * **   * *  *** * * *      *

consensus_2483#0      GGTCAGTTTTACCAGAGCTCGGCCGATTCGCACATTTGGTCGAAGCTGTTCTACTACCAT 441
consensus_2483#1      TGCTACTCTCGGAAGTGC-CGCTGGAAGTGAAACCATCGCCGGA-------CGGCAGCAC 522
                       *  * * *    ** ** **   **   * *    * * ** *           * ** 

consensus_2483#0      ATGGGCGGTTACGGTCCACCGTCTTTGTTTCTGAAGAAGGGTACCGTGTTGAAATCCTTG 501
consensus_2483#1      ACCGACCGT----GCCCTTCTTCCCTCCGTCCGATCCGTCCAGCCCCGCTTCA-CCCGTG 577
                      *  * * **    * **  * **  *   ** **         **  * *  *  ** **

consensus_2483#0      CCACGAATGTTTCTCGGCTACGGCAAGCTTCTGATCACGATTGTCAACACCGACTCGTAT 561
consensus_2483#1      CCGCTCACACCGACCGATTCCGG---GGCACCGTTTGCGAAGGAAAAAAC-GACCCCCGA 633
                      ** *  *       **  * ***   *   * * *  ***  *  ** ** *** *    

consensus_2483#0      GTGTTGAATTCGGAGAAGTTTTACACGCTGAACGAGCACCTCAAGAATGAGTGTCTGCTT 621
consensus_2483#1      A---TCAACGGGCAGCGGCTTC-CGT---------------------------------- 655
                          * **   * **  * **  *                                    

consensus_2483#0      ATTCAGGGATATGGTATCAACGAACCGGCCAAGGTTCACTACGAGCCGTTTCCGTTCGAC 681
consensus_2483#1      ------------------------------------------------------------
                                                                                  

consensus_2483#0      ATAAACGACGAAGACAATCGTTGGGGACAGCATGCAGCTTGGAACGGACTGTCGCAGGTC 741
consensus_2483#1      ------------------------------------------------------------
                                                                                  

consensus_2483#0      GTGAATATGGAGAAAACGTTCGGTTATGTTACGTTCATCAACACAGGCGTTCCGGACCTG 801
consensus_2483#1      ------------------------------------------------------------
                                                                                  

consensus_2483#0      GGCTGCGACAATTATAATCCCTCCGTGGTACTTAAAAGACCGGGTGATAGGAAACAAAAG 861
consensus_2483#1      ------------------------------------------------------------
                                                                                  

consensus_2483#0      AATACAGCGAAAGAAGGAAGAGCC 885
consensus_2483#1      ------------------------