These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGAGACGGATGTGTGTCGAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGCAAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGCTAAGTGTTTAAACTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGAAAAGTGCAAAAGTGTAAGTGTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGGGCCGTGCTGCCAGTATTCTACTATGTGACGTTTGAGCGATCGATTAGCGTTTCCAGCAGTGTGATTTTTGTTTTCATTTTTGCTACCATCCTCAACCAAAAATAACAACTAGTTTCCCCCAACACGGGCATACATTTAACAGTGGAAAGTGTGAGAATTGTGTGCACCATTTGTCGTATGCAAATATATATATTTATATATATATA] [+] EMBL BM577470 [CCGAGACGGATGTGTGTCGAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGCAAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGCTAAGTGTTTAAACTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGAAAAGTGCAAAAGTGTAAGTGTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGGGCCGTGCTGCCAGTATTCTACTATGTGACGTTTGAGCGATCGATTAGCGTTTCCAGCAGTGTGATTTTTGTTTTCATTTTTGCTACCATCCTCAACCAAAAATAACAACTAGTTTCCCCCAACACGGGCATACATTTAACAGTGGAAAGTGTGAGAATTGTGTGCACCATTTGTCGTATGCAAATATATATATTTATATATATATA] consensusID : consensus_2484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [AGATCGCCCGAGGTTAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGCAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGGCTAAGGTGTTTAAACTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGGAAAGTGCAAAAGTGTAAGTGTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGGGCCGTGCTGTTAGTATTCTACTATGT] [+] EMBL AL930581 [AGATCGCCCGAGGTTAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGCAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGGCTAAGGTGTTTAAACTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGGAAAGTGCAAAAGTGTAAGTGTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGGGCCGTGCTGTTAGTATTCTACTATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2484#0 CCGAGACGGATGTGTGTCGAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACAC 60 consensus_2484#1 ---AGATCG-CCCGAGGTTAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACAC 56 *** * * * ***************************************** consensus_2484#0 CAGCAAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAA 120 consensus_2484#1 CAGCAAA-CTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAA 115 ******* **************************************************** consensus_2484#0 ATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTT 180 consensus_2484#1 ATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTT 175 ************************************************************ consensus_2484#0 TCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGA 240 consensus_2484#1 TCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGA 235 ************************************************************ consensus_2484#0 TTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGA 300 consensus_2484#1 TTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGA 295 ************************************************************ consensus_2484#0 TACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTG-CTAAG-TGTTTAAA 358 consensus_2484#1 TACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGGCTAAGGTGTTTAAA 355 ********************************************* ***** ******** consensus_2484#0 CTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGAAAAGTGCAAAAGTGTAAGT 418 consensus_2484#1 CTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGGAAAGTGCAAAAGTGTAAGT 415 **************************************** ******************* consensus_2484#0 GTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAA 478 consensus_2484#1 GTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAA 475 ************************************************************ consensus_2484#0 GAAGGGCCGTGCTGCCAGTATTCTACTATGTGACGTTTGAGCGATCGATTAGCGTTTCCA 538 consensus_2484#1 GAAGGGCCGTGCTGTTAGTATTCTACTATGT----------------------------- 506 ************** *************** consensus_2484#0 GCAGTGTGATTTTTGTTTTCATTTTTGCTACCATCCTCAACCAAAAATAACAACTAGTTT 598 consensus_2484#1 ------------------------------------------------------------ consensus_2484#0 CCCCCAACACGGGCATACATTTAACAGTGGAAAGTGTGAGAATTGTGTGCACCATTTGTC 658 consensus_2484#1 ------------------------------------------------------------ consensus_2484#0 GTATGCAAATATATATATTTATATATATATA 689 consensus_2484#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||