These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGCCCACGCGTCCGGGGCGCCAAAATGGCCACAGCCACGGAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAGGATCGGTAACGATCCCCGCCTGCAGAACTTCCCCTTCGTGAAGGAGGTGGCGGTGCAGGAGGCGGATGAAAAGTCCAGAATCGAGCTGTTGCCGGTGCTGCAGACGTCCTGCGTCGGGGTAAACGTGTTTGTTGAAGAGTATGGTGGGATGTGATACGTGTGCGTGCTGAACTGAATTGTAATTTTTATGGTGTGGTCAATT] [+] EMBL BM623489 [CCGCCCACGCGTCCGGGGCGCCAAAATGGCCACAGCCACGGAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAGGATCGGTAACGATCCCCGCCTGCAGAACTTCCCCTTCGTGAAGGAGGTGGCGGTGCAGGAGGCGGATGAAAAGTCCAGAATCGAGCTGTTGCCGGTGCTGCAGACGTCCTGCGTCGGGGTAAACGTGTTTGTTGAAGAGTATGGTGGGATGTGATACGTGTGCGTGCTGAACTGAATTGTAATTTTTATGGTGTGGTCAATT] consensusID : consensus_2485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [CCGCCCACGCGTCCGAACACATCCTACATACCGAAACATCAACAAACGCAAACAAGGGCGCCAAAATGGCCACAGCCACGGTAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAG] [+] EMBL BM585056 [CCGCCCACGCGTCCGAACACATCCTACATACCGAAACATCAACAAACGCAAACAAGGGCGCCAAAATGGCCACAGCCACGGTAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2485#0 ---------------------------------------CCGCCCACGCGTCCG-GGGCG 20 consensus_2485#1 CCGCCCACGCGTCCGAACACATCCTACATACCGAAACATCAACAAACGCAAACAAGGGCG 60 * * **** * ***** consensus_2485#0 CCAAAATGGCCACAGCCACGG-AAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAG 79 consensus_2485#1 CCAAAATGGCCACAGCCACGGTAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAG 120 ********************* ************************************** consensus_2485#0 ATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATC 139 consensus_2485#1 ATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATC 180 ************************************************************ consensus_2485#0 CGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATC 199 consensus_2485#1 CGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATC 240 ************************************************************ consensus_2485#0 GCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAA 259 consensus_2485#1 GCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAA 300 ************************************************************ consensus_2485#0 GTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTAC 319 consensus_2485#1 GTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTAC 360 ************************************************************ consensus_2485#0 CAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAG 379 consensus_2485#1 CAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAG 420 ************************************************************ consensus_2485#0 TCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGG- 438 consensus_2485#1 TCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGG 480 *********************************************************** consensus_2485#0 ACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAGGATCGGTAACG 498 consensus_2485#1 ACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAG----------- 529 ************************************************* consensus_2485#0 ATCCCCGCCTGCAGAACTTCCCCTTCGTGAAGGAGGTGGCGGTGCAGGAGGCGGATGAAA 558 consensus_2485#1 ------------------------------------------------------------ consensus_2485#0 AGTCCAGAATCGAGCTGTTGCCGGTGCTGCAGACGTCCTGCGTCGGGGTAAACGTGTTTG 618 consensus_2485#1 ------------------------------------------------------------ consensus_2485#0 TTGAAGAGTATGGTGGGATGTGATACGTGTGCGTGCTGAACTGAATTGTAATTTTTATGG 678 consensus_2485#1 ------------------------------------------------------------ consensus_2485#0 TGTGGTCAATT 689 consensus_2485#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||